MD04G1218300.v1.1

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
30080255 .. 30083687
3433 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1218300.v1.1.491

Sequence Viewer

Length: 972 bp
ATGGAAGTCAAATTTGCAATCAAGAACGATGTCACCGAACTGATTGGAAATACCCCGTTGGTATATCTCAACAATGTCGTGGATGGTTGCGTAGCACGAATTGCTGCCAAGCTAGAGTCAATGGAGCCCTGCTCAAGTGTAAAAGACAGGATTGCATCTAGTATGATCAAGGACGCCGAGGATAAAGGTCTAATTACGCCAGGGAAGACTGTTCTCATTGAGGGCACGAGTGGCAACACCGGCATTGGATTGGCATTCATTGCAGCAAGCAGGGGCTACAAGGTTAAACTAACCATGCCATCTTCAATGAGTATTGAGAGAAGAATTGTGATGCTAGCTTTCGGTGCTGAGGTGTACCTTACAGATCCTGCCAAGGGCATTAAGGGAGTCTTTGATAAAGCTGAGGAGTTATTGAGTAACACGCCTAACGGTTACATACTAGGCCAATTTGAAAATCCTGCCAATCCGAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACACAGGAGGGAAGGTTGATGCCCTGGTTTCGGGAATAGGGACTGGGGGTACAGTTGCCGGTGCAGGGACATTCCTTAAAGAGCAGAATCCAGAGATTAAGGTGTACGGTGTAGAACCAGCTGAAAGCCCAGTCTTGAACGGTGGCCAAGCTGGGAAGCATCTGATCCAAGGAATTGGTGCTGGTATCCTACCTGTAGTTCTGGACATTAGGTTGCTTGATGAAGTTATTGAAGTAACAAGTGAGGAAGCAATTGACACCGCGAAGCAGCTTGCCCTGAAAGAAGGTCTTCTGGTGGGGATTTCATCTGGTGCTGCGGCCGCTGCTGCAATAAAGTTGGCTAAGAGGCCGGAATATGCTGGAAAACTCATTGTTGCTGTGTTCCCCAGTTTTGGAGAGCGTTATCTGTCTTCTGCACTTTTTGATTCCATTAGGCATGAGGCGGAAAACTTGAGTATTTGCTGA

Protein Analysis

324

Amino Acids

34.05

Weight (kDa)

5.24

Isoelectric Point (pI)

27.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 11 - 298 6.6e-76 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 770
AciI CCGC 4 cut(s) 768, 824, 828, 950
AclWI GGATC 2 cut(s) 359, 667
AcoI YGGCCR 2 cut(s) 652, 825
AcsI RAATTY 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 3 cut(s) 356, 559, 614
AfiI CCNNNNNNNGG 4 cut(s) 374, 538, 573, 899
AgsI TTSAA 4 cut(s) 306, 452, 646, 740
AjnI CCWGG 2 cut(s) 199, 531
AluBI AGCT 6 cut(s) 112, 338, 401, 629, 659, 778
AluI AGCT 6 cut(s) 112, 338, 401, 629, 659, 778
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 2 cut(s) 359, 667
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 5 cut(s) 442, 490, 652, 825, 854
ApeKI GCWGC 6 cut(s) 104, 263, 775, 821, 830, 833
ApoI RAATTY 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 795
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 654
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 1 cut(s) 226
BbsI GAAGAC 3 cut(s) 212, 788, 909
BbvCI CCTCAGC 2 cut(s) 348, 402
BbvI GCAGC 6 cut(s) 91, 275, 787, 808, 817, 820
BccI CCATC 2 cut(s) 77, 307
BciT130I CCWGG 2 cut(s) 201, 533
BciVI GTATCC 1 cut(s) 704
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 4 cut(s) 113, 159, 335, 440
BfmI CTRYAG 1 cut(s) 702
BfuI GTATCC 1 cut(s) 704
BisI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
BlsI GCNGC 8 cut(s) 106, 265, 777, 823, 826, 829, 832, 835
Bme1390I CCNGG 3 cut(s) 201, 494, 533
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 3 cut(s) 201, 494, 533
BmrI ACTGGG 3 cut(s) 561, 632, 888
BmsI GCATC 4 cut(s) 164, 321, 517, 676
BmtI GCTAGC 1 cut(s) 338
BmuI ACTGGG 3 cut(s) 561, 632, 888
BpiI GAAGAC 3 cut(s) 212, 788, 909
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu10I CCTNAGC 2 cut(s) 348, 402
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 5 cut(s) 177, 200, 372, 531, 676
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 4 cut(s) 374, 538, 573, 899
Bse118I RCCGGY 2 cut(s) 239, 566
Bse1I ACTGG 4 cut(s) 493, 556, 638, 894
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 2 cut(s) 201, 533
BseDI CCNNGG 5 cut(s) 177, 200, 372, 531, 676
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 4 cut(s) 374, 538, 573, 899
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 339, 393
BseNI ACTGG 4 cut(s) 493, 556, 638, 894
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 227
BseX3I CGGCCG 1 cut(s) 825
BseXI GCAGC 6 cut(s) 91, 275, 787, 808, 817, 820
BseYI CCCAGC 1 cut(s) 659
BsgI GTGCAG 2 cut(s) 591, 906
Bsh1236I CGCG 1 cut(s) 770
Bsh1285I CGRYCG 1 cut(s) 828
BshFI GGCC 5 cut(s) 444, 492, 654, 827, 856
BsiEI CGRYCG 1 cut(s) 828
BsiSI CCGG 4 cut(s) 240, 494, 567, 857
BslFI GGGAC 2 cut(s) 562, 589
BslI CCNNNNNNNGG 4 cut(s) 374, 538, 573, 899
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 2 cut(s) 562, 589
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 5 cut(s) 444, 492, 654, 827, 856
Bsp1286I GDGCHC 2 cut(s) 129, 227
Bsp143I GATC 3 cut(s) 165, 364, 672
BspACI CCGC 4 cut(s) 768, 824, 828, 950
BspANI GGCC 5 cut(s) 444, 492, 654, 827, 856
BspCNI CTCAG 2 cut(s) 340, 394
BspFNI CGCG 1 cut(s) 770
BspLI GGNNCC 1 cut(s) 126
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 2 cut(s) 359, 667
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 239, 566
BsrI ACTGG 4 cut(s) 493, 556, 638, 894
BssAI RCCGGY 2 cut(s) 239, 566
BssECI CCNNGG 5 cut(s) 177, 200, 372, 531, 676
BssMI GATC 3 cut(s) 165, 364, 672
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 2 cut(s) 372, 676
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 201, 533
Bst4CI ACNGT 5 cut(s) 211, 431, 562, 617, 650
BstACI GRCGYC 1 cut(s) 174
BstAPI GCANNNNNTGC 2 cut(s) 101, 260
BstC8I GCNNGC 3 cut(s) 268, 336, 780
BstDEI CTNAG 3 cut(s) 348, 402, 849
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 770
BstKTI GATC 3 cut(s) 168, 367, 675
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 165, 364, 672
BstMCI CGRYCG 1 cut(s) 828
BstMWI GCNNNNNNNGC 8 cut(s) 101, 231, 240, 260, 344, 827, 830, 833
BstNI CCWGG 2 cut(s) 201, 533
BstSCI CCNGG 3 cut(s) 199, 492, 531
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 1 cut(s) 770
BstV1I GCAGC 6 cut(s) 91, 275, 787, 808, 817, 820
BstV2I GAAGAC 3 cut(s) 212, 788, 909
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 825
BsuI GTATCC 1 cut(s) 704
BsuRI GGCC 5 cut(s) 444, 492, 654, 827, 856
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 3 cut(s) 268, 336, 780
CaiI CAGNNNCTG 1 cut(s) 368
CciNI GCGGCCGC 1 cut(s) 825
Cfr10I RCCGGY 2 cut(s) 239, 566
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 355, 558, 613
CviAII CATG 2 cut(s) 295, 944
CviQI GTAC 3 cut(s) 355, 558, 613
DdeI CTNAG 3 cut(s) 348, 402, 849
DpnI GATC 3 cut(s) 167, 366, 674
DpnII GATC 3 cut(s) 165, 364, 672
EaeI YGGCCR 2 cut(s) 652, 825
EagI CGGCCG 1 cut(s) 825
EciI GGCGGA 1 cut(s) 965
EclXI CGGCCG 1 cut(s) 825
Eco130I CCWWGG 2 cut(s) 372, 676
Eco24I GRGCYC 1 cut(s) 129
Eco52I CGGCCG 1 cut(s) 825
EcoRII CCWGG 2 cut(s) 199, 531
EcoT14I CCWWGG 2 cut(s) 372, 676
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 2 cut(s) 372, 676
FaeI CATG 2 cut(s) 298, 947
FaiI YATR 8 cut(s) 64, 164, 296, 437, 480, 502, 864, 945
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 780, 812
FaqI GGGAC 2 cut(s) 562, 589
FatI CATG 2 cut(s) 294, 943
FbaI TGATCA 1 cut(s) 165
Fnu4HI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
FspBI CTAG 4 cut(s) 113, 159, 335, 440
GluI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
GsaI CCCAGC 1 cut(s) 663
HaeIII GGCC 5 cut(s) 444, 492, 654, 827, 856
HapII CCGG 4 cut(s) 240, 494, 567, 857
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 298, 947
HinfI GANTC 5 cut(s) 116, 387, 472, 595, 932
HpaII CCGG 4 cut(s) 240, 494, 567, 857
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 355, 613
Hpy188I TCNGA 2 cut(s) 468, 672
Hpy188III TCNNGA 5 cut(s) 22, 540, 599, 643, 710
Hpy8I GTNNAC 2 cut(s) 355, 613
HpyAV CCTTC 2 cut(s) 514, 785
HpyCH4III ACNGT 5 cut(s) 211, 431, 562, 617, 650
HpyCH4V TGCA 6 cut(s) 17, 155, 263, 572, 836, 923
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 231, 240, 260, 344, 827, 830, 833
HpyF3I CTNAG 3 cut(s) 348, 402, 849
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 298, 947
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 3 cut(s) 165, 364, 672
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 6 cut(s) 91, 275, 787, 808, 817, 820
LweI GCATC 4 cut(s) 164, 321, 517, 676
MaeI CTAG 4 cut(s) 113, 159, 335, 440
MaeIII GTNAC 4 cut(s) 31, 416, 431, 742
MalI GATC 3 cut(s) 167, 366, 674
MboI GATC 3 cut(s) 165, 364, 672
MboII GAAGA 6 cut(s) 217, 294, 333, 481, 788, 909
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 129, 227
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 7 cut(s) 11, 99, 192, 324, 446, 681, 759
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 2 cut(s) 125, 396
MnlI CCTC 8 cut(s) 172, 214, 343, 397, 509, 745, 846, 940
Mox20I TGGCCA 1 cut(s) 654
MroXI GAANNNNTTC 1 cut(s) 795
MscI TGGCCA 1 cut(s) 654
MseI TTAA 4 cut(s) 285, 381, 585, 606
Msp20I TGGCCA 1 cut(s) 654
MspA1I CMGCKG 2 cut(s) 629, 830
MspI CCGG 4 cut(s) 240, 494, 567, 857
MspR9I CCNGG 3 cut(s) 201, 494, 533
MunI CAATTG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 2 cut(s) 201, 533
MvnI CGCG 1 cut(s) 770
MwoI GCNNNNNNNGC 8 cut(s) 101, 231, 240, 260, 344, 827, 830, 833
NciI CCSGG 1 cut(s) 494
NdeII GATC 3 cut(s) 165, 364, 672
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 2 cut(s) 298, 947
NlaIV GGNNCC 1 cut(s) 126
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 31
NotI GCGGCCGC 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 3 cut(s) 472, 595, 932
PkrI GCNGC 8 cut(s) 106, 265, 777, 823, 826, 829, 832, 835
PleI GAGTC 2 cut(s) 124, 395
PpsI GAGTC 2 cut(s) 124, 395
Psp6I CCWGG 2 cut(s) 199, 531
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 2 cut(s) 199, 531
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 3 cut(s) 356, 559, 614
RsaNI GTAC 3 cut(s) 355, 558, 613
SaqAI TTAA 4 cut(s) 285, 381, 585, 606
SatI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
Sau3AI GATC 3 cut(s) 165, 364, 672
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 2 cut(s) 125, 396
ScrFI CCNGG 3 cut(s) 201, 494, 533
SduI GDGCHC 2 cut(s) 129, 227
SfaNI GCATC 4 cut(s) 164, 321, 517, 676
SfcI CTRYAG 1 cut(s) 702
SmlI CTYRAG 2 cut(s) 133, 958
SmoI CTYRAG 2 cut(s) 133, 958
Sse9I AATT 7 cut(s) 11, 99, 192, 324, 446, 681, 759
SsiI CCGC 4 cut(s) 768, 824, 828, 950
SspMI CTAG 4 cut(s) 113, 159, 335, 440
StyD4I CCNGG 3 cut(s) 199, 492, 531
StyI CCWWGG 2 cut(s) 372, 676
TaaI ACNGT 5 cut(s) 211, 431, 562, 617, 650
TasI AATT 7 cut(s) 11, 99, 192, 324, 446, 681, 759
TauI GCSGC 2 cut(s) 827, 830
TfiI GAWTC 3 cut(s) 472, 595, 932
Tru1I TTAA 4 cut(s) 285, 381, 585, 606
Tru9I TTAA 4 cut(s) 285, 381, 585, 606
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 6 cut(s) 104, 263, 775, 821, 830, 833
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 5 cut(s) 247, 464, 495, 744, 801
TspRI CASTG 1 cut(s) 493
XapI RAATTY 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 4 cut(s) 113, 159, 335, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.