Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

3475465 .. 3477128

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCCCTCAACATATAGTCTTGAAAGAAGAATTGTGCTCCTAGCCTTTGGAGCTGAGGTATACCTCACTGATTCGGCCAAAGGTATTAAGGGAGTTCTTGATAAGGCCGAAGAGTTGCTTCGTGACACGCCTGATAGTCATATGCTTCAGCAACTTGAAAATCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCAGAGATCTGGAGAGACTCAGCAAGGAAAGTTGATATCTTGGTTTCAGGGATAGGAACCGGTGGCACAGTAACCGGTATAGGGAAATTTCTTAAAGAGCAAAATCCAGAGATCAAGGTTTGCGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATGGAGGTCCACCTGGAAGGCATCTGATCCAAGGAATCGGTGTTGGCTTCATACCTCAAGTTCTCGATGTTAGCCTGCTAGACGAAGTTATTCCAGTATCCAGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTGAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

224

Amino Acids

24.05

Weight (kDa)

5.11

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	1 - 200	7e-43	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	613
AccI	GTMKAC	2 cut(s)	60, 623
AciI	CCGC	2 cut(s)	321, 613
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	279, 605
AgeI	ACCGGT	2 cut(s)	257, 272
AgsI	TTSAA	4 cut(s)	23, 158, 352, 493
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	53, 481
AluI	AGCT	2 cut(s)	53, 481
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	207, 464
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	4 cut(s)	75, 105, 196, 560
ApeKI	GCWGC	3 cut(s)	527, 536, 539
ApoI	RAATTY	1 cut(s)	284
AsiGI	ACCGGT	2 cut(s)	257, 272
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	197, 359
AvaII	GGWCC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	514, 548, 551
BciT130I	CCWGG	1 cut(s)	366
BciVI	GTATCC	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	207, 464
BfaI	CTAG	2 cut(s)	41, 431
BfuI	GTATCC	1 cut(s)	460
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	3 cut(s)	528, 537, 540
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	3 cut(s)	529, 538, 541
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	197, 359
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	2 cut(s)	257, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 605
Bse118I	RCCGGY	2 cut(s)	257, 272
Bse1I	ACTGG	5 cut(s)	199, 332, 446, 453, 600
Bse8I	GATNNNNATC	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	517
BseLI	CCNNNNNNNGG	2 cut(s)	279, 605
BseMII	CTCAG	2 cut(s)	45, 231
BseNI	ACTGG	5 cut(s)	199, 332, 446, 453, 600
BseXI	GCAGC	3 cut(s)	514, 548, 551
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	4 cut(s)	77, 107, 198, 562
BshTI	ACCGGT	2 cut(s)	257, 272
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	3 cut(s)	258, 273, 573
BslI	CCNNNNNNNGG	2 cut(s)	279, 605
BsmAI	GTCTC	2 cut(s)	207, 464
BsnI	GGCC	4 cut(s)	77, 107, 198, 562
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	204, 309, 378
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	2 cut(s)	321, 613
BspANI	GGCC	4 cut(s)	77, 107, 198, 562
BspCNI	CTCAG	2 cut(s)	46, 230
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	613
BsrFI	RCCGGY	2 cut(s)	257, 272
BsrI	ACTGG	5 cut(s)	199, 332, 446, 453, 600
BssAI	RCCGGY	2 cut(s)	257, 272
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	204, 309, 378
BssNAI	GTATAC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	382
Bst1107I	GTATAC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	54, 217, 477
BstKTI	GATC	3 cut(s)	207, 312, 381
BstMAI	GTCTC	2 cut(s)	207, 464
BstMBI	GATC	3 cut(s)	204, 309, 378
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 533, 536
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	514, 548, 551
BstX2I	RGATCY	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	204
BstZ17I	GTATAC	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	4 cut(s)	77, 107, 198, 562
BtsIMutI	CAGTG	3 cut(s)	66, 192, 460
Cac8I	GCNNGC	1 cut(s)	428
Cfr10I	RCCGGY	2 cut(s)	257, 272
Cfr13I	GGNCC	2 cut(s)	197, 359
CspAI	ACCGGT	2 cut(s)	257, 272
CviAII	CATG	2 cut(s)	650, 664
CviJI	RGCY	9 cut(s)	44, 53, 77, 107, 198, 399, 426, 481, 562
CviKI_1	RGCY	9 cut(s)	44, 53, 77, 107, 198, 399, 426, 481, 562
DdeI	CTNAG	3 cut(s)	54, 217, 477
DpnI	GATC	3 cut(s)	206, 311, 380
DpnII	GATC	3 cut(s)	204, 309, 378
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	653, 667
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 486, 518
FatI	CATG	2 cut(s)	649, 663
FauNDI	CATATG	1 cut(s)	141
FblI	GTMKAC	2 cut(s)	60, 623
Fnu4HI	GCNGC	3 cut(s)	528, 537, 540
Fsp4HI	GCNGC	3 cut(s)	528, 537, 540
FspBI	CTAG	2 cut(s)	41, 431
GluI	GCNGC	3 cut(s)	528, 537, 540
GsuI	CTGGAG	1 cut(s)	229
HaeIII	GGCC	4 cut(s)	77, 107, 198, 562
HapII	CCGG	3 cut(s)	258, 273, 573
Hin1II	CATG	2 cut(s)	653, 667
HinfI	GANTC	6 cut(s)	71, 178, 215, 387, 461, 513
HpaII	CCGG	3 cut(s)	258, 273, 573
Hpy166II	GTNNAC	3 cut(s)	61, 362, 624
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	7 cut(s)	20, 98, 122, 208, 305, 349, 416
Hpy8I	GTNNAC	3 cut(s)	61, 362, 624
HpyAV	CCTTC	2 cut(s)	363, 491
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	344, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 533, 536
HpyF3I	CTNAG	3 cut(s)	54, 217, 477
Hsp92II	CATG	2 cut(s)	653, 667
Kzo9I	GATC	3 cut(s)	204, 309, 378
LmnI	GCTCC	2 cut(s)	42, 50
Lsp1109I	GCAGC	3 cut(s)	514, 548, 551
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	2 cut(s)	41, 431
MaeIII	GTNAC	2 cut(s)	122, 268
MalI	GATC	3 cut(s)	206, 311, 380
MbiI	CCGCTC	1 cut(s)	613
MboI	GATC	3 cut(s)	204, 309, 378
MboII	GAAGA	2 cut(s)	39, 122
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	2 cut(s)	30, 284
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	16, 49, 74, 350, 417, 451, 646
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	2 cut(s)	87, 291
MspI	CCGG	3 cut(s)	258, 273, 573
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	50, 533, 536
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	3 cut(s)	204, 309, 378
NlaIII	CATG	2 cut(s)	653, 667
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	5 cut(s)	71, 178, 387, 461, 513
PinAI	ACCGGT	2 cut(s)	257, 272
PkrI	GCNGC	3 cut(s)	529, 538, 541
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	197, 359
PsuI	RGATCY	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	87, 291
SatI	GCNGC	3 cut(s)	528, 537, 540
Sau3AI	GATC	3 cut(s)	204, 309, 378
Sau96I	GGNCC	2 cut(s)	197, 359
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	2 cut(s)	30, 284
SsiI	CCGC	2 cut(s)	321, 613
SspMI	CTAG	2 cut(s)	41, 431
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	417
TasI	AATT	2 cut(s)	30, 284
TfiI	GAWTC	5 cut(s)	71, 178, 387, 461, 513
Tru1I	TTAA	2 cut(s)	87, 291
Tru9I	TTAA	2 cut(s)	87, 291
TscAI	CASTG	3 cut(s)	73, 199, 460
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	3 cut(s)	527, 536, 539
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	3 cut(s)	170, 201, 391
TspRI	CASTG	3 cut(s)	73, 199, 460
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	284
XmiI	GTMKAC	2 cut(s)	60, 623
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	2 cut(s)	41, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.