pycom04g19410

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
21145687 .. 21148925
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g19410.8

Sequence Viewer

Length: 1077 bp
ATGGTAGTGCAAGGAGCCATTTTCCAGAAAATTACAATACAATTTTCTTTCTTTCTTCCATATCTCTGCCTGCAAAAGATAAGCTTGCTGCAACAGAAGATAAATATGGAAGTCAAATTTGCAATCAAGAACGATGTCACCGAACTGATTGGAAACACCCCGTTGGTATATCTCAACAATGTCGTGGATGGTTGCGTAGCACGAATTGCTGCCAAGCTAGAGTCAATGGAGCCCTGCTCAAGTGTAAAAGACAGGATTGCATATAGTATGATCAAGGACGCGGAGGATAAGGGTCTAATTACGCCAGGGAAGACTGTTCTCATTGAGGCCACGAGTGGCAACACTGGCATTGGATTGGCATTCATTGCAGCAAGCAGGGGCTACAAGGTTAAGCTGACCATGCCATCTTCAATGAGTATTGAGAGAAGAATTGTGCTCCTAGCTTTCGGGGCTGAGGTGTACCTCACAGATCCTGCCAAGGGTATTAAGGGAGTTTTTGATAAAGCTGAGGAGTTATTGAGTAACACGCCTAATGGTTATATACTTGGCCAATTTGAAAATCCTGCCAATCCGAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACACAGGAGGGAAGGTTGATGCCCTGGTTTCAGGAATAGGGACTGGGGGTACAGTTGCCGGTGCAGGGACATTCCTTAAAGAGCAGAATCCAGAGATTAAGGTGTACGGTGTAGAACCAGCTGAAAGCCCAGTCCTGAACGGTGGCCAAGCTGGGAAGCATCTGATCCAAGGAATCGGTGCTGGTATCATACCTGTAGTTCTGGACGTTAGCTTGCTCGATGAAGTTATTCAAGTAACGAGTGAGGAAGCAATTGACACCGCGAAGCAGCTTGCCCTGAAAGAAGGTCTTCTGGTGGGGATTTCATCTGGTGCTGCGGCCGCTGCTGCAATAAAGTTGGCGAAGAGGCCTGAATATGCTGGAAAACTCATTGTTACTGTGTTCCCCAGTTTTGGAGAGCGTTATCTGTCTTCTGCACTCTTTGATTCCGTTAGGCATGAGGCGGAAAACTTGAGTATTTGCTGA

Protein Analysis

359

Amino Acids

38.13

Weight (kDa)

5.62

Isoelectric Point (pI)

24.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 281, 875
AciI CCGC 5 cut(s) 281, 873, 929, 933, 1055
AclWI GGATC 2 cut(s) 464, 772
AcoI YGGCCR 3 cut(s) 547, 757, 930
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 3 cut(s) 461, 664, 719
AfiI CCNNNNNNNGG 3 cut(s) 479, 678, 1004
AgsI TTSAA 3 cut(s) 411, 557, 845
AjnI CCWGG 2 cut(s) 304, 636
AluBI AGCT 9 cut(s) 84, 217, 394, 443, 506, 734, 764, 825, 883
AluI AGCT 9 cut(s) 84, 217, 394, 443, 506, 734, 764, 825, 883
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 2 cut(s) 464, 772
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 6 cut(s) 327, 547, 595, 757, 930, 959
ApeKI GCWGC 7 cut(s) 88, 209, 368, 880, 926, 935, 938
ApoI RAATTY 1 cut(s) 116
Asp700I GAANNNNTTC 2 cut(s) 840, 900
AspS9I GGNCC 1 cut(s) 596
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 1 cut(s) 130
BalI TGGCCA 2 cut(s) 549, 759
BanII GRGCYC 1 cut(s) 234
BauI CACGAG 1 cut(s) 331
BbsI GAAGAC 3 cut(s) 317, 893, 1014
Bbv12I GWGCWC 1 cut(s) 438
BbvCI CCTCAGC 2 cut(s) 453, 507
BbvI GCAGC 7 cut(s) 75, 196, 380, 892, 913, 922, 925
BccI CCATC 2 cut(s) 182, 412
BciT130I CCWGG 2 cut(s) 306, 638
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 1 cut(s) 606
BfaI CTAG 2 cut(s) 218, 440
BfmI CTRYAG 1 cut(s) 807
BisI GCNGC 9 cut(s) 89, 210, 369, 881, 927, 930, 933, 936, 939
BlsI GCNGC 9 cut(s) 90, 211, 370, 882, 928, 931, 934, 937, 940
Bme1390I CCNGG 3 cut(s) 306, 599, 638
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 2 cut(s) 16, 231
BmrFI CCNGG 3 cut(s) 306, 599, 638
BmrI ACTGGG 3 cut(s) 666, 737, 993
BmsI GCATC 2 cut(s) 622, 781
BmuI ACTGGG 3 cut(s) 666, 737, 993
BpiI GAAGAC 3 cut(s) 317, 893, 1014
BplI GAGNNNNNCTC 2 cut(s) 221, 253
Bpu10I CCTNAGC 2 cut(s) 453, 507
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 599
BsaJI CCNNGG 4 cut(s) 305, 477, 636, 781
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 3 cut(s) 479, 678, 1004
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 5 cut(s) 349, 598, 661, 743, 999
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 306, 638
BseDI CCNNGG 4 cut(s) 305, 477, 636, 781
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 3 cut(s) 479, 678, 1004
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 444, 498
BseNI ACTGG 5 cut(s) 349, 598, 661, 743, 999
BseRI GAGGAG 1 cut(s) 524
BseX3I CGGCCG 1 cut(s) 930
BseXI GCAGC 7 cut(s) 75, 196, 380, 892, 913, 922, 925
BseYI CCCAGC 1 cut(s) 764
BsgI GTGCAG 2 cut(s) 696, 1011
Bsh1236I CGCG 2 cut(s) 281, 875
Bsh1285I CGRYCG 1 cut(s) 933
BshFI GGCC 6 cut(s) 329, 549, 597, 759, 932, 961
BsiEI CGRYCG 1 cut(s) 933
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 599, 672
BslFI GGGAC 2 cut(s) 667, 694
BslI CCNNNNNNNGG 3 cut(s) 479, 678, 1004
BsmAI GTCTC 1 cut(s) 606
BsmFI GGGAC 2 cut(s) 667, 694
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 6 cut(s) 329, 549, 597, 759, 932, 961
Bsp1286I GDGCHC 2 cut(s) 234, 438
Bsp143I GATC 3 cut(s) 270, 469, 777
BspACI CCGC 5 cut(s) 281, 873, 929, 933, 1055
BspANI GGCC 6 cut(s) 329, 549, 597, 759, 932, 961
BspCNI CTCAG 2 cut(s) 445, 499
BspFNI CGCG 2 cut(s) 281, 875
BspLI GGNNCC 2 cut(s) 16, 231
BspPI GGATC 2 cut(s) 464, 772
BsrDI GCAATG 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 5 cut(s) 349, 598, 661, 743, 999
BssAI RCCGGY 1 cut(s) 671
BssECI CCNNGG 4 cut(s) 305, 477, 636, 781
BssMI GATC 3 cut(s) 270, 469, 777
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 2 cut(s) 477, 781
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 306, 638
Bst4CI ACNGT 5 cut(s) 316, 667, 722, 755, 991
Bst6I CTCTTC 1 cut(s) 950
BstAPI GCANNNNNTGC 2 cut(s) 206, 365
BstC8I GCNNGC 5 cut(s) 71, 86, 373, 827, 885
BstDEI CTNAG 2 cut(s) 453, 507
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 2 cut(s) 281, 875
BstKTI GATC 3 cut(s) 273, 472, 780
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 3 cut(s) 270, 469, 777
BstMCI CGRYCG 1 cut(s) 933
BstMWI GCNNNNNNNGC 8 cut(s) 206, 345, 365, 400, 449, 932, 935, 938
BstNI CCWGG 2 cut(s) 306, 638
BstSCI CCNGG 3 cut(s) 304, 597, 636
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 2 cut(s) 281, 875
BstV1I GCAGC 7 cut(s) 75, 196, 380, 892, 913, 922, 925
BstV2I GAAGAC 3 cut(s) 317, 893, 1014
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BstZI CGGCCG 1 cut(s) 930
BsuRI GGCC 6 cut(s) 329, 549, 597, 759, 932, 961
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 342, 591
Cac8I GCNNGC 5 cut(s) 71, 86, 373, 827, 885
CaiI CAGNNNCTG 1 cut(s) 473
CciNI GCGGCCGC 1 cut(s) 930
Cfr10I RCCGGY 1 cut(s) 671
Cfr13I GGNCC 1 cut(s) 596
CseI GACGC 1 cut(s) 287
Csp6I GTAC 3 cut(s) 460, 663, 718
CviAII CATG 2 cut(s) 400, 1049
CviQI GTAC 3 cut(s) 460, 663, 718
DdeI CTNAG 2 cut(s) 453, 507
DpnI GATC 3 cut(s) 272, 471, 779
DpnII GATC 3 cut(s) 270, 469, 777
EaeI YGGCCR 3 cut(s) 547, 757, 930
EagI CGGCCG 1 cut(s) 930
Eam1104I CTCTTC 1 cut(s) 950
EarI CTCTTC 1 cut(s) 950
EciI GGCGGA 1 cut(s) 1070
EclXI CGGCCG 1 cut(s) 930
Eco130I CCWWGG 2 cut(s) 477, 781
Eco147I AGGCCT 1 cut(s) 961
Eco24I GRGCYC 1 cut(s) 234
Eco52I CGGCCG 1 cut(s) 930
EcoRII CCWGG 2 cut(s) 304, 636
EcoT14I CCWWGG 2 cut(s) 477, 781
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 2 cut(s) 477, 781
FaeI CATG 2 cut(s) 403, 1052
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 885, 917
FaqI GGGAC 2 cut(s) 667, 694
FatI CATG 2 cut(s) 399, 1048
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 9 cut(s) 89, 210, 369, 881, 927, 930, 933, 936, 939
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 9 cut(s) 89, 210, 369, 881, 927, 930, 933, 936, 939
FspBI CTAG 2 cut(s) 218, 440
GluI GCNGC 9 cut(s) 89, 210, 369, 881, 927, 930, 933, 936, 939
GsaI CCCAGC 1 cut(s) 768
HaeIII GGCC 6 cut(s) 329, 549, 597, 759, 932, 961
HapII CCGG 2 cut(s) 599, 672
HgaI GACGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 403, 1052
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 5 cut(s) 221, 577, 700, 786, 1037
HpaII CCGG 2 cut(s) 599, 672
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 460, 718
Hpy188I TCNGA 2 cut(s) 573, 777
Hpy188III TCNNGA 6 cut(s) 25, 127, 645, 704, 748, 815
Hpy8I GTNNAC 2 cut(s) 460, 718
HpyAV CCTTC 2 cut(s) 619, 890
HpyCH4III ACNGT 5 cut(s) 316, 667, 722, 755, 991
HpyCH4IV ACGT 1 cut(s) 819
HpyCH4V TGCA 9 cut(s) 10, 73, 91, 122, 260, 368, 677, 941, 1028
HpyF10VI GCNNNNNNNGC 8 cut(s) 206, 345, 365, 400, 449, 932, 935, 938
HpyF3I CTNAG 2 cut(s) 453, 507
HpySE526I ACGT 1 cut(s) 819
Hsp92II CATG 2 cut(s) 403, 1052
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 3 cut(s) 270, 469, 777
LmnI GCTCC 3 cut(s) 14, 229, 441
Lsp1109I GCAGC 7 cut(s) 75, 196, 380, 892, 913, 922, 925
LweI GCATC 2 cut(s) 622, 781
MaeI CTAG 2 cut(s) 218, 440
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 4 cut(s) 136, 521, 847, 985
MalI GATC 3 cut(s) 272, 471, 779
MboI GATC 3 cut(s) 270, 469, 777
MboII GAAGA 9 cut(s) 47, 109, 322, 399, 438, 586, 893, 967, 1014
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 234, 438
MlsI TGGCCA 2 cut(s) 549, 759
MluCI AATT 8 cut(s) 30, 41, 116, 204, 297, 429, 551, 864
MluNI TGGCCA 2 cut(s) 549, 759
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 9 cut(s) 277, 319, 448, 473, 502, 614, 850, 951, 1045
Mox20I TGGCCA 2 cut(s) 549, 759
MroXI GAANNNNTTC 2 cut(s) 840, 900
MscI TGGCCA 2 cut(s) 549, 759
MseI TTAA 4 cut(s) 390, 486, 690, 711
Msp20I TGGCCA 2 cut(s) 549, 759
MspA1I CMGCKG 2 cut(s) 734, 935
MspI CCGG 2 cut(s) 599, 672
MspR9I CCNGG 3 cut(s) 306, 599, 638
MunI CAATTG 1 cut(s) 864
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 2 cut(s) 306, 638
MvnI CGCG 2 cut(s) 281, 875
MwoI GCNNNNNNNGC 8 cut(s) 206, 345, 365, 400, 449, 932, 935, 938
NciI CCSGG 1 cut(s) 599
NdeII GATC 3 cut(s) 270, 469, 777
NlaIII CATG 2 cut(s) 403, 1052
NlaIV GGNNCC 2 cut(s) 16, 231
NmuCI GTSAC 1 cut(s) 136
NotI GCGGCCGC 1 cut(s) 930
PceI AGGCCT 1 cut(s) 961
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 2 cut(s) 840, 900
PfeI GAWTC 4 cut(s) 577, 700, 786, 1037
PkrI GCNGC 9 cut(s) 90, 211, 370, 882, 928, 931, 934, 937, 940
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 304, 636
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 2 cut(s) 304, 636
PspN4I GGNNCC 2 cut(s) 16, 231
PspPI GGNCC 1 cut(s) 596
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 1 cut(s) 469
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 3 cut(s) 461, 664, 719
RsaNI GTAC 3 cut(s) 460, 663, 718
SaqAI TTAA 4 cut(s) 390, 486, 690, 711
SatI GCNGC 9 cut(s) 89, 210, 369, 881, 927, 930, 933, 936, 939
Sau3AI GATC 3 cut(s) 270, 469, 777
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 306, 599, 638
SduI GDGCHC 2 cut(s) 234, 438
SfaNI GCATC 2 cut(s) 622, 781
SfcI CTRYAG 1 cut(s) 807
SmlI CTYRAG 2 cut(s) 238, 1063
SmoI CTYRAG 2 cut(s) 238, 1063
Sse9I AATT 8 cut(s) 30, 41, 116, 204, 297, 429, 551, 864
SseBI AGGCCT 1 cut(s) 961
SsiI CCGC 5 cut(s) 281, 873, 929, 933, 1055
SspMI CTAG 2 cut(s) 218, 440
StuI AGGCCT 1 cut(s) 961
StyD4I CCNGG 3 cut(s) 304, 597, 636
StyI CCWWGG 2 cut(s) 477, 781
TaaI ACNGT 5 cut(s) 316, 667, 722, 755, 991
TaiI ACGT 1 cut(s) 822
TaqI TCGA 1 cut(s) 831
TasI AATT 8 cut(s) 30, 41, 116, 204, 297, 429, 551, 864
TauI GCSGC 2 cut(s) 932, 935
TfiI GAWTC 4 cut(s) 577, 700, 786, 1037
Tru1I TTAA 4 cut(s) 390, 486, 690, 711
Tru9I TTAA 4 cut(s) 390, 486, 690, 711
TscAI CASTG 2 cut(s) 349, 598
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 7 cut(s) 88, 209, 368, 880, 926, 935, 938
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 352, 569, 600, 849, 906
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 2 cut(s) 349, 598
XapI RAATTY 1 cut(s) 116
XmnI GAANNNNTTC 2 cut(s) 840, 900
XspI CTAG 2 cut(s) 218, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.