Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

49667995 .. 49673260

Gene Structure 5266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGATTCTAGATCAAGGGATAGAGTAGTACTTAAGTTGAATGCTAGGCTTGGATTCGAATACGATGATGAGAGACAGAAATACTCAAAGCAATGGATCGCATATAGCATGATCAAGGATGCAGAGGATAAGGGTCTAATTACGCCAGGGAAGACTGTTCTTATTGAGCCTACAAGTGGCAACACTGGCATTGGATTGGCATTCATTGCCGCAACCAAGGGCTACAAGCTTAAGCTAAGCATGCCATCTATAGTGAGTCTTGAAAGAAGAATTGTGCTCCGAGCTTTTGGAGCTGAGGTCTTCATCACAGATCCTGCTAAGGGATTTAAGGGAGTTCTTGCTAAGGCAGATGAGCTGCTAAGCAACACACCTAATAGCTTTATGCTTCAACAGTTTGAAAACCCTGCCAATCCAGAGGTTCATTATGAAACCACTGGCCCAGAGATATGGAGAGACTCGGGAGGGAAAGTTGATGTTTTGGTTTCAGGGATAGGGACTGGGGGTACTGTAACTGGTGCAGGGAGTTTCCTCAAAGAGCAAAATCCAGATATCAAGGTGTATGGTGTAGAACCAGCTGAAAGTGCAATATTGAATGGCGGCAAACCTGGGATGCACCTGATCCAAGGAATTGGTGCTGGTTTCATACCTCAAGTTCTGGATGTTAGCTTGCTGGATGAAGTTATTCAAGTATCCAGTGAGGAAGCAATTGAAACTGCTAAGCTGCTTGCACTAAAAGAAGGTCTTTTGGTAGGAATTTCATCTGGTGCTGCTGCAGCAGCAGCAATAAAGTTGGCAAAGAAGCAAGAAAATGCTGGAAAACTGATAGTTGTTGTGTTCGCCAGTTCTGGAGAGCGCTACCTGTCTTCGCCACTCTTCGATACCATTCGGCATGAGGCAGAAAATATGAAGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

305

Amino Acids

32.74

Weight (kDa)

5.63

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	33 - 279	7e-61	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	210, 597
AclWI	GGATC	3 cut(s)	104, 305, 613
AcsI	RAATTY	1 cut(s)	753
AfaI	GTAC	2 cut(s)	30, 505
AfeI	AGCGCT	1 cut(s)	854
AfiI	CCNNNNNNNGG	2 cut(s)	176, 320
AflII	CTTAAG	2 cut(s)	32, 230
AgsI	TTSAA	8 cut(s)	40, 263, 389, 398, 592, 686, 710, 914
AjnI	CCWGG	2 cut(s)	145, 604
AluBI	AGCT	9 cut(s)	229, 235, 284, 293, 355, 378, 575, 666, 721
AluI	AGCT	9 cut(s)	229, 235, 284, 293, 355, 378, 575, 666, 721
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	2 cut(s)	67, 447
AlwI	GGATC	3 cut(s)	104, 305, 613
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	457
Aor51HI	AGCGCT	1 cut(s)	854
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	7 cut(s)	355, 721, 767, 770, 773, 776, 779
ApoI	RAATTY	1 cut(s)	753
Asp700I	GAANNNNTTC	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	855
AspS9I	GGNCC	1 cut(s)	437
AsuII	TTCGAA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	457
BbsI	GAAGAC	3 cut(s)	158, 292, 855
Bbv12I	GWGCWC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	7 cut(s)	342, 708, 754, 757, 785, 788, 791
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	147, 606
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	67, 447
BfaI	CTAG	2 cut(s)	9, 45
BfmI	CTRYAG	2 cut(s)	249, 771
BfoI	RGCGCY	1 cut(s)	856
BfrI	CTTAAG	2 cut(s)	32, 230
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	9 cut(s)	210, 356, 598, 722, 768, 771, 774, 777, 780
BlpI	GCTNAGC	3 cut(s)	236, 359, 717
BlsI	GCNGC	9 cut(s)	211, 357, 599, 723, 769, 772, 775, 778, 781
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	147, 606
BmeT110I	CYCGRG	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	437
BmrFI	CCNGG	2 cut(s)	147, 606
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	2 cut(s)	109, 600
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	3 cut(s)	158, 292, 855
BpmI	CTGGAG	1 cut(s)	867
Bpu10I	CCTNAGC	3 cut(s)	294, 318, 342
Bpu1102I	GCTNAGC	3 cut(s)	236, 359, 717
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	633
BsaJI	CCNNGG	4 cut(s)	146, 216, 605, 622
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 320
Bse1I	ACTGG	6 cut(s)	190, 439, 502, 517, 693, 840
Bse3DI	GCAATG	2 cut(s)	98, 204
BseBI	CCWGG	2 cut(s)	147, 606
BseDI	CCNNGG	4 cut(s)	146, 216, 605, 622
BseGI	GGATG	4 cut(s)	124, 615, 664, 679
BseLI	CCNNNNNNNGG	2 cut(s)	176, 320
BseMI	GCAATG	2 cut(s)	98, 204
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	6 cut(s)	190, 439, 502, 517, 693, 840
BseXI	GCAGC	7 cut(s)	342, 708, 754, 757, 785, 788, 791
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	2 cut(s)	176, 320
BsmAI	GTCTC	2 cut(s)	67, 447
BsmFI	GGGAC	1 cut(s)	508
BsmI	GAATGC	2 cut(s)	46, 200
BsnI	GGCC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	11, 96, 111, 310, 618
Bsp1720I	GCTNAGC	3 cut(s)	236, 359, 717
BspACI	CCGC	2 cut(s)	210, 597
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	3 cut(s)	104, 305, 613
BspT104I	TTCGAA	1 cut(s)	57
BspTI	CTTAAG	2 cut(s)	32, 230
BsrDI	GCAATG	2 cut(s)	98, 204
BsrI	ACTGG	6 cut(s)	190, 439, 502, 517, 693, 840
BssECI	CCNNGG	4 cut(s)	146, 216, 605, 622
BssMI	GATC	5 cut(s)	11, 96, 111, 310, 618
BssT1I	CCWWGG	2 cut(s)	216, 622
Bst2UI	CCWGG	2 cut(s)	147, 606
Bst4CI	ACNGT	3 cut(s)	157, 393, 508
Bst6I	CTCTTC	1 cut(s)	878
BstAFI	CTTAAG	2 cut(s)	32, 230
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	242, 668, 726
BstDEI	CTNAG	6 cut(s)	236, 294, 318, 342, 359, 717
BstF5I	GGATG	4 cut(s)	124, 615, 664, 679
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	855
BstKTI	GATC	5 cut(s)	14, 99, 114, 313, 621
BstMAI	GTCTC	2 cut(s)	67, 447
BstMBI	GATC	5 cut(s)	11, 96, 111, 310, 618
BstMWI	GCNNNNNNNGC	8 cut(s)	186, 206, 241, 290, 581, 773, 776, 779
BstNI	CCWGG	2 cut(s)	147, 606
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	145, 604
BstSFI	CTRYAG	2 cut(s)	249, 771
BstV1I	GCAGC	7 cut(s)	342, 708, 754, 757, 785, 788, 791
BstV2I	GAAGAC	3 cut(s)	158, 292, 855
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	2 cut(s)	447, 629
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	124, 615, 664, 679
BtsIMutI	CAGTG	3 cut(s)	183, 432, 700
Cac8I	GCNNGC	3 cut(s)	242, 668, 726
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	855
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	29, 504
CviAII	CATG	3 cut(s)	109, 241, 890
CviQI	GTAC	2 cut(s)	29, 504
DdeI	CTNAG	6 cut(s)	236, 294, 318, 342, 359, 717
DpnI	GATC	5 cut(s)	13, 98, 113, 312, 620
DpnII	GATC	5 cut(s)	11, 96, 111, 310, 618
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Eco130I	CCWWGG	2 cut(s)	216, 622
Eco32I	GATATC	1 cut(s)	550
Eco47III	AGCGCT	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	145, 604
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	216, 622
ErhI	CCWWGG	2 cut(s)	216, 622
FaeI	CATG	3 cut(s)	112, 244, 893
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	3 cut(s)	108, 240, 889
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	9 cut(s)	210, 356, 598, 722, 768, 771, 774, 777, 780
FokI	GGATG	4 cut(s)	131, 622, 671, 686
Fsp4HI	GCNGC	9 cut(s)	210, 356, 598, 722, 768, 771, 774, 777, 780
FspBI	CTAG	2 cut(s)	9, 45
GlaI	GCGC	1 cut(s)	854
GluI	GCNGC	9 cut(s)	210, 356, 598, 722, 768, 771, 774, 777, 780
GsuI	CTGGAG	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	856
HaeIII	GGCC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	855
Hin1II	CATG	3 cut(s)	112, 244, 893
Hin6I	GCGC	1 cut(s)	853
HinP1I	GCGC	1 cut(s)	853
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	4 cut(s)	5, 54, 256, 455
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	7 cut(s)	9, 260, 413, 459, 545, 656, 846
HpyAV	CCTTC	1 cut(s)	731
HpyCH4III	ACNGT	3 cut(s)	157, 393, 508
HpyCH4V	TGCA	6 cut(s)	122, 518, 584, 613, 728, 773
HpyF10VI	GCNNNNNNNGC	8 cut(s)	186, 206, 241, 290, 581, 773, 776, 779
HpyF3I	CTNAG	6 cut(s)	236, 294, 318, 342, 359, 717
Hsp92II	CATG	3 cut(s)	112, 244, 893
HspAI	GCGC	1 cut(s)	853
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	5 cut(s)	11, 96, 111, 310, 618
LmnI	GCTCC	2 cut(s)	282, 290
Lsp1109I	GCAGC	7 cut(s)	342, 708, 754, 757, 785, 788, 791
LweI	GCATC	2 cut(s)	109, 600
MaeI	CTAG	2 cut(s)	9, 45
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	5 cut(s)	13, 98, 113, 312, 620
MboI	GATC	5 cut(s)	11, 96, 111, 310, 618
MboII	GAAGA	5 cut(s)	163, 279, 292, 855, 865
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	5 cut(s)	138, 270, 627, 705, 753
MlyI	GAGTC	2 cut(s)	265, 449
MnlI	CCTC	8 cut(s)	118, 289, 409, 455, 539, 657, 691, 886
MroXI	GAANNNNTTC	1 cut(s)	681
MseI	TTAA	3 cut(s)	33, 231, 327
MspA1I	CMGCKG	1 cut(s)	575
MspCI	CTTAAG	2 cut(s)	32, 230
MspR9I	CCNGG	2 cut(s)	147, 606
MunI	CAATTG	1 cut(s)	705
Mva1269I	GAATGC	2 cut(s)	46, 200
MvaI	CCWGG	2 cut(s)	147, 606
MwoI	GCNNNNNNNGC	8 cut(s)	186, 206, 241, 290, 581, 773, 776, 779
NdeII	GATC	5 cut(s)	11, 96, 111, 310, 618
NlaIII	CATG	3 cut(s)	112, 244, 893
NspI	RCATGY	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	244
PctI	GAATGC	2 cut(s)	46, 200
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	5, 54
PkrI	GCNGC	9 cut(s)	211, 357, 599, 723, 769, 772, 775, 778, 781
PleI	GAGTC	2 cut(s)	264, 449
PpsI	GAGTC	2 cut(s)	264, 449
Psp6I	CCWGG	2 cut(s)	145, 604
PspGI	CCWGG	2 cut(s)	145, 604
PspPI	GGNCC	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	30, 505
RsaNI	GTAC	2 cut(s)	29, 504
SaqAI	TTAA	3 cut(s)	33, 231, 327
SatI	GCNGC	9 cut(s)	210, 356, 598, 722, 768, 771, 774, 777, 780
Sau3AI	GATC	5 cut(s)	11, 96, 111, 310, 618
Sau96I	GGNCC	1 cut(s)	437
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	2 cut(s)	265, 449
ScrFI	CCNGG	2 cut(s)	147, 606
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	2 cut(s)	109, 600
SfcI	CTRYAG	2 cut(s)	249, 771
SfuI	TTCGAA	1 cut(s)	57
SmlI	CTYRAG	3 cut(s)	32, 230, 648
SmoI	CTYRAG	3 cut(s)	32, 230, 648
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	5 cut(s)	138, 270, 627, 705, 753
SsiI	CCGC	2 cut(s)	210, 597
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	2 cut(s)	9, 45
StyD4I	CCNGG	2 cut(s)	145, 604
StyI	CCWWGG	2 cut(s)	216, 622
TaaI	ACNGT	3 cut(s)	157, 393, 508
TaqI	TCGA	2 cut(s)	57, 876
TasI	AATT	5 cut(s)	138, 270, 627, 705, 753
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	2 cut(s)	212, 600
TfiI	GAWTC	2 cut(s)	5, 54
Tru1I	TTAA	3 cut(s)	33, 231, 327
Tru9I	TTAA	3 cut(s)	33, 231, 327
TscAI	CASTG	3 cut(s)	190, 439, 700
TseI	GCWGC	7 cut(s)	355, 721, 767, 770, 773, 776, 779
TspDTI	ATGAA	7 cut(s)	193, 292, 410, 441, 631, 690, 747
TspRI	CASTG	3 cut(s)	190, 439, 700
Vha464I	CTTAAG	2 cut(s)	32, 230
XapI	RAATTY	1 cut(s)	753
XbaI	TCTAGA	1 cut(s)	8
XceI	RCATGY	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	2 cut(s)	9, 45
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.