Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

2821444 .. 2823511

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAGGGCCAATGTGCAATCAAGAAAGATGTCACCGAATTAATTGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGATGATGGGACCCTGCTCTAGTGTTAAAGACAGGATTGGACATAGTATGATCAAAGATGCGGAGGACAAAGGTCTAATAACTCCTGGAAAGACTGTTCTCGTTGAGCCCACAAGTGGTAACACTGGCATTGGATTAGCATTCATAGCAGCTAGCAAGGGTTACAAGCTGAAGCTAGTCATGCCATCAACATATAGTCTTGAAAGAAGAATTATGCTCCTAGCTTTTGGAGCTGAGGTATACCTCACAGATAAGAACAAAGGTATGAAGGGAACACTTGATAAGGCCGAGGAGTTGCTACGTGACACGCCTGATAGTCATATGCTTCAGCAACTTGAAAATCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCAGAGATCTGGAGAGACTCAGCAGGGAAAGTTGATATCTTGGTTTCAGGGATAGGAACCGGTGGCACAGTAACCGGTATAGGGAAATTTCTTAAAGAGCAAAATCCAGAGATCAAGGTTTGCGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATGGAGGTCCACCTGGAAGGCATCTGATCCAAGGAATCGGTGCTGGCTTCATACCTCAAGTTCTCGATGTTAGCCTGCTAGACGAAGTTATTCCAGTATCCAGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTGAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTTGTTGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

322

Amino Acids

34.38

Weight (kDa)

5.55

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 298	4.9e-71	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	907
AccI	GTMKAC	3 cut(s)	63, 354, 917
AciI	CCGC	3 cut(s)	176, 615, 907
AclWI	GGATC	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	2 cut(s)	305, 425
AfiI	CCNNNNNNNGG	3 cut(s)	230, 573, 899
AgeI	ACCGGT	2 cut(s)	551, 566
AgsI	TTSAA	4 cut(s)	317, 452, 646, 787
AjnI	CCWGG	2 cut(s)	199, 658
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	8 cut(s)	95, 112, 266, 283, 289, 338, 347, 775
AluI	AGCT	8 cut(s)	95, 112, 266, 283, 289, 338, 347, 775
Alw26I	GTCTC	2 cut(s)	501, 758
AlwI	GGATC	1 cut(s)	667
AoxI	GGCC	4 cut(s)	7, 399, 490, 854
ApeKI	GCWGC	5 cut(s)	104, 263, 821, 830, 833
ApoI	RAATTY	1 cut(s)	578
AseI	ATTAAT	1 cut(s)	41
AsiGI	ACCGGT	2 cut(s)	551, 566
Asp700I	GAANNNNTTC	1 cut(s)	735
AspS9I	GGNCC	4 cut(s)	7, 125, 491, 653
AsuHPI	GGTGA	1 cut(s)	25
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	125, 653
BanII	GRGCYC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	5 cut(s)	91, 275, 808, 842, 845
BccI	CCATC	2 cut(s)	115, 307
BciT130I	CCWGG	2 cut(s)	201, 660
BciVI	GTATCC	1 cut(s)	754
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	501, 758
BfaI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725
BfuI	GTATCC	1 cut(s)	754
BglII	AGATCT	1 cut(s)	498
BisI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	5 cut(s)	106, 265, 823, 832, 835
Bme1390I	CCNGG	2 cut(s)	201, 660
Bme18I	GGWCC	2 cut(s)	125, 653
BmgT120I	GGNCC	4 cut(s)	7, 125, 491, 653
BmiI	GGNNCC	3 cut(s)	126, 127, 550
BmrFI	CCNGG	2 cut(s)	201, 660
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	2 cut(s)	163, 676
BmtI	GCTAGC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	888
BoxI	GACNNNNGTC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	523
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	811
BsaJI	CCNNGG	2 cut(s)	402, 676
BsaWI	WCCGGW	2 cut(s)	551, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 573, 899
Bse118I	RCCGGY	2 cut(s)	551, 566
Bse1I	ACTGG	6 cut(s)	244, 493, 626, 740, 747, 894
Bse8I	GATNNNNATC	1 cut(s)	811
BseBI	CCWGG	2 cut(s)	201, 660
BseDI	CCNNGG	2 cut(s)	402, 676
BseJI	GATNNNNATC	1 cut(s)	811
BseLI	CCNNNNNNNGG	3 cut(s)	230, 573, 899
BseMII	CTCAG	2 cut(s)	339, 525
BseNI	ACTGG	6 cut(s)	244, 493, 626, 740, 747, 894
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	5 cut(s)	91, 275, 808, 842, 845
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	4 cut(s)	9, 401, 492, 856
BshTI	ACCGGT	2 cut(s)	551, 566
BsiSI	CCGG	3 cut(s)	552, 567, 867
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	3 cut(s)	230, 573, 899
BsmAI	GTCTC	2 cut(s)	501, 758
BsmFI	GGGAC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	4 cut(s)	9, 401, 492, 856
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	165, 498, 603, 672
Bsp1720I	GCTNAGC	1 cut(s)	771
BspACI	CCGC	3 cut(s)	176, 615, 907
BspANI	GGCC	4 cut(s)	9, 401, 492, 856
BspCNI	CTCAG	2 cut(s)	340, 524
BspLI	GGNNCC	3 cut(s)	126, 127, 550
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	667
BsrBI	CCGCTC	1 cut(s)	907
BsrFI	RCCGGY	2 cut(s)	551, 566
BsrI	ACTGG	6 cut(s)	244, 493, 626, 740, 747, 894
BssAI	RCCGGY	2 cut(s)	551, 566
BssECI	CCNNGG	2 cut(s)	402, 676
BssMI	GATC	4 cut(s)	165, 498, 603, 672
BssNAI	GTATAC	2 cut(s)	64, 355
BssT1I	CCWWGG	1 cut(s)	676
Bst1107I	GTATAC	2 cut(s)	64, 355
Bst2UI	CCWGG	2 cut(s)	201, 660
Bst4CI	ACNGT	2 cut(s)	211, 562
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	268, 691, 722
BstDEI	CTNAG	3 cut(s)	348, 511, 771
BstKTI	GATC	4 cut(s)	168, 501, 606, 675
BstMAI	GTCTC	2 cut(s)	501, 758
BstMBI	GATC	4 cut(s)	165, 498, 603, 672
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 260, 295, 344, 827, 830
BstNI	CCWGG	2 cut(s)	201, 660
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	199, 658
BstV1I	GCAGC	5 cut(s)	91, 275, 808, 842, 845
BstX2I	RGATCY	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	498
BstZ17I	GTATAC	2 cut(s)	64, 355
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	4 cut(s)	9, 401, 492, 856
BtsIMutI	CAGTG	3 cut(s)	237, 486, 754
Cac8I	GCNNGC	3 cut(s)	268, 691, 722
Cfr10I	RCCGGY	2 cut(s)	551, 566
Cfr13I	GGNCC	4 cut(s)	7, 125, 491, 653
CspAI	ACCGGT	2 cut(s)	551, 566
CviAII	CATG	3 cut(s)	295, 944, 958
DdeI	CTNAG	3 cut(s)	348, 511, 771
DpnI	GATC	4 cut(s)	167, 500, 605, 674
DpnII	GATC	4 cut(s)	165, 498, 603, 672
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	125, 653
Eco57I	CTGAAG	2 cut(s)	305, 425
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	199, 658
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	3 cut(s)	298, 947, 961
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	3 cut(s)	294, 943, 957
FauNDI	CATATG	1 cut(s)	435
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	3 cut(s)	63, 354, 917
Fnu4HI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
FspBI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725
GluI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
GsuI	CTGGAG	1 cut(s)	523
HaeIII	GGCC	4 cut(s)	9, 401, 492, 856
HapII	CCGG	3 cut(s)	552, 567, 867
Hin1II	CATG	3 cut(s)	298, 947, 961
HinfI	GANTC	5 cut(s)	472, 509, 681, 755, 807
HpaII	CCGG	3 cut(s)	552, 567, 867
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	4 cut(s)	64, 355, 656, 918
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	6 cut(s)	22, 314, 502, 599, 643, 710
Hpy8I	GTNNAC	4 cut(s)	64, 355, 656, 918
HpyAV	CCTTC	4 cut(s)	77, 376, 657, 785
HpyCH4III	ACNGT	2 cut(s)	211, 562
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	3 cut(s)	17, 638, 824
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 260, 295, 344, 827, 830
HpyF3I	CTNAG	3 cut(s)	348, 511, 771
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	3 cut(s)	298, 947, 961
KflI	GGGWCCC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	165, 498, 603, 672
LmnI	GCTCC	2 cut(s)	336, 344
Lsp1109I	GCAGC	5 cut(s)	91, 275, 808, 842, 845
LweI	GCATC	2 cut(s)	163, 676
MaeI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	5 cut(s)	31, 233, 275, 416, 562
MalI	GATC	4 cut(s)	167, 500, 605, 674
MbiI	CCGCTC	1 cut(s)	907
MboI	GATC	4 cut(s)	165, 498, 603, 672
MboII	GAAGA	1 cut(s)	333
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	4 cut(s)	38, 42, 324, 578
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	8 cut(s)	172, 343, 368, 397, 644, 711, 745, 940
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	3 cut(s)	41, 141, 585
MspI	CCGG	3 cut(s)	552, 567, 867
MspR9I	CCNGG	2 cut(s)	201, 660
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	201, 660
MwoI	GCNNNNNNNGC	6 cut(s)	101, 260, 295, 344, 827, 830
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	4 cut(s)	165, 498, 603, 672
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	298, 947, 961
NlaIV	GGNNCC	3 cut(s)	126, 127, 550
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	2 cut(s)	31, 416
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	4 cut(s)	472, 681, 755, 807
PfoI	TCCNGGA	1 cut(s)	199
PinAI	ACCGGT	2 cut(s)	551, 566
PkrI	GCNGC	5 cut(s)	106, 265, 823, 832, 835
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	416
PpuMI	RGGWCCY	1 cut(s)	125
PshAI	GACNNNNGTC	1 cut(s)	186
PshBI	ATTAAT	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	199, 658
PspGI	CCWGG	2 cut(s)	199, 658
PspN4I	GGNNCC	3 cut(s)	126, 127, 550
PspPI	GGNCC	4 cut(s)	7, 125, 491, 653
PspPPI	RGGWCCY	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	41, 141, 585
SatI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
Sau3AI	GATC	4 cut(s)	165, 498, 603, 672
Sau96I	GGNCC	4 cut(s)	7, 125, 491, 653
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	201, 660
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	163, 676
SinI	GGWCC	2 cut(s)	125, 653
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
Sse9I	AATT	4 cut(s)	38, 42, 324, 578
SsiI	CCGC	3 cut(s)	176, 615, 907
SspMI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725
StyD4I	CCNGG	2 cut(s)	199, 658
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	211, 562
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	1 cut(s)	711
TasI	AATT	4 cut(s)	38, 42, 324, 578
TfiI	GAWTC	4 cut(s)	472, 681, 755, 807
Tru1I	TTAA	3 cut(s)	41, 141, 585
Tru9I	TTAA	3 cut(s)	41, 141, 585
TscAI	CASTG	3 cut(s)	244, 493, 754
TseFI	GTSAC	2 cut(s)	31, 416
TseI	GCWGC	5 cut(s)	104, 263, 821, 830, 833
Tsp45I	GTSAC	2 cut(s)	31, 416
TspDTI	ATGAA	5 cut(s)	247, 395, 464, 495, 685
TspRI	CASTG	3 cut(s)	244, 493, 754
VpaK11BI	GGWCC	2 cut(s)	125, 653
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	578
XmiI	GTMKAC	3 cut(s)	63, 354, 917
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.