MD12G1235500.v1.1

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
31008194 .. 31010521
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1235500.v1.1.491

Sequence Viewer

Length: 972 bp
ATGGAGGGCAACTGTGCAATCAGGAAAGATGTCACCGAATTAATCGGCAATACCCCGATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTAGCTCGAATTGCTGCCAAGCTAGAGACAATGGAACCCTGCTCTAGTGTGAAAGACAGAATTGCGTATAGCATGATCAAGGACGCAGAGGATAAAGGCCTGATTACGCCAGGGGAGACTGTCCTCGTTGAGCCCACGAGTGGAAACACCGGCATTGGATTAGCGTTCCTTGCAGCTAGCAAGGGTTACAAGCTCAAGCTAAGCATGCCATCCATAGTGAGTCTCGAAAGAAGAATCGTGCTCCGAGCTTTTGGAGCTGAGGTGTACATAACAGATCCTGCCAAGGGTATTAAGGGAGTTTTTGATAAGGCCGGGGAGTTGCTGAGTAACACACCTAATAGTCATATGCTTTGCCAATTTGAAAATCCTGCAAATCCAAAGATTCACTATGAAACCACTGGCCCGGAGATATGGAGAGACTCGGGAGGGAAAGTTGATGCTCTAGTTGCAGGGATAGGGACTGGAGGGACAGTAACTGGTGCAGGGAAGTTCCTAAAAGAGAAAAATTCCGACATCAAGGTTTACGGTGTAGAGCCAGCCGAAAGTGCTGTGTTGAATGGTGGCACACCAGGGATGCATCTGATCCAAGGAATTGGTGCCGGTTTCATACCTAAAGTTCTGGATGTTAGCCTTCTCGACGAAGTTATTCAAGTATCCAGCGAGGAAGCTATCAAAACTTCTAAGCTACTTGCCCTAAAAGAAGGTCTTCTGGTGGGGATTTCATCTGGTGCTGCAGCAGCTGCTGGTATAAAGTTGGCAAAGAGGCAAGAAAATGCTGGGAAACTCATTGTTGTTGTGTTCCCCAGCTTCGGAGAGCGTTATCTGTCTACTGCGCTCTTCGATTCCATTAGGCTTGACGCAGAAAACATGAAATTCGACTGA

Protein Analysis

324

Amino Acids

34.15

Weight (kDa)

5.81

Isoelectric Point (pI)

14.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 11 - 298 3e-70 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 686
AccI GTMKAC 1 cut(s) 917
AclWI GGATC 2 cut(s) 359, 667
AcsI RAATTY 2 cut(s) 595, 962
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 230, 374, 899
AgsI TTSAA 3 cut(s) 452, 646, 740
AjnI CCWGG 2 cut(s) 199, 658
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 4 cut(s) 110, 200, 317, 501
AlwI GGATC 2 cut(s) 359, 667
AlwNI CAGNNNCTG 4 cut(s) 368, 566, 830, 833
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 3 cut(s) 187, 399, 490
ApeKI GCWGC 6 cut(s) 104, 263, 821, 824, 827, 830
ApoI RAATTY 2 cut(s) 595, 962
AseI ATTAAT 1 cut(s) 41
Asp700I GAANNNNTTC 2 cut(s) 735, 795
AspLEI GCGC 1 cut(s) 925
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 2 cut(s) 403, 494
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 511
BanI GGYRCC 1 cut(s) 686
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 6 cut(s) 91, 275, 808, 817, 836, 839
BccI CCATC 3 cut(s) 52, 77, 307
BciT130I CCWGG 2 cut(s) 201, 660
BciVI GTATCC 1 cut(s) 754
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 2 cut(s) 403, 494
BcoDI GTCTC 4 cut(s) 110, 200, 317, 501
BfaI CTAG 4 cut(s) 113, 135, 267, 533
BfmI CTRYAG 1 cut(s) 822
BfuI GTATCC 1 cut(s) 754
BisI GCNGC 6 cut(s) 105, 264, 822, 825, 828, 831
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 6 cut(s) 106, 265, 823, 826, 829, 832
Bme1390I CCNGG 4 cut(s) 201, 403, 494, 660
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 2 cut(s) 126, 688
BmrFI CCNGG 4 cut(s) 201, 403, 494, 660
BmsI GCATC 3 cut(s) 517, 654, 676
BmtI GCTAGC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 788
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 2 cut(s) 403, 494
BsaJI CCNNGG 5 cut(s) 200, 372, 402, 659, 676
BsaXI ACNNNNNCTCC 6 cut(s) 336, 366, 507, 537, 546, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 374, 899
Bse118I RCCGGY 2 cut(s) 239, 689
Bse1I ACTGG 3 cut(s) 493, 556, 571
BseBI CCWGG 2 cut(s) 201, 660
BseDI CCNNGG 5 cut(s) 200, 372, 402, 659, 676
BseGI GGATG 4 cut(s) 88, 299, 669, 718
BseLI CCNNNNNNNGG 3 cut(s) 230, 374, 899
BseMII CTCAG 2 cut(s) 339, 404
BseNI ACTGG 3 cut(s) 493, 556, 571
BseXI GCAGC 6 cut(s) 91, 275, 808, 817, 836, 839
BseYI CCCAGC 2 cut(s) 866, 893
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 3 cut(s) 189, 401, 492
BshNI GGYRCC 1 cut(s) 686
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 4 cut(s) 240, 402, 494, 690
BslFI GGGAC 2 cut(s) 562, 571
BslI CCNNNNNNNGG 3 cut(s) 230, 374, 899
BsmAI GTCTC 4 cut(s) 110, 200, 317, 501
BsmFI GGGAC 2 cut(s) 562, 571
BsnI GGCC 3 cut(s) 189, 401, 492
BsoBI CYCGRG 1 cut(s) 511
Bsp1286I GDGCHC 2 cut(s) 225, 333
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 3 cut(s) 165, 364, 672
Bsp1720I GCTNAGC 1 cut(s) 290
BspANI GGCC 3 cut(s) 189, 401, 492
BspCNI CTCAG 2 cut(s) 340, 405
BspLI GGNNCC 2 cut(s) 126, 688
BspMAI CTGCAG 1 cut(s) 826
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 2 cut(s) 359, 667
BspQI GCTCTTC 1 cut(s) 932
BspT107I GGYRCC 1 cut(s) 686
BsrFI RCCGGY 2 cut(s) 239, 689
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 3 cut(s) 493, 556, 571
BssAI RCCGGY 2 cut(s) 239, 689
BssECI CCNNGG 5 cut(s) 200, 372, 402, 659, 676
BssMI GATC 3 cut(s) 165, 364, 672
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 2 cut(s) 372, 676
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 201, 660
Bst4CI ACNGT 4 cut(s) 14, 211, 562, 617
Bst6I CTCTTC 1 cut(s) 932
BstAPI GCANNNNNTGC 1 cut(s) 830
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 268, 296, 627
BstDEI CTNAG 4 cut(s) 290, 348, 413, 771
BstF5I GGATG 4 cut(s) 88, 299, 669, 718
BstHHI GCGC 1 cut(s) 925
BstKTI GATC 3 cut(s) 168, 367, 675
BstMAI GTCTC 4 cut(s) 110, 200, 317, 501
BstMBI GATC 3 cut(s) 165, 364, 672
BstMWI GCNNNNNNNGC 8 cut(s) 101, 260, 295, 344, 536, 635, 827, 830
BstNI CCWGG 2 cut(s) 201, 660
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 4 cut(s) 199, 401, 492, 658
BstSFI CTRYAG 1 cut(s) 822
BstV1I GCAGC 6 cut(s) 91, 275, 808, 817, 836, 839
BstV2I GAAGAC 1 cut(s) 788
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 754
BsuRI GGCC 3 cut(s) 189, 401, 492
BtsCI GGATG 4 cut(s) 88, 299, 669, 718
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 3 cut(s) 268, 296, 627
CaiI CAGNNNCTG 4 cut(s) 368, 566, 830, 833
CfoI GCGC 1 cut(s) 925
Cfr10I RCCGGY 2 cut(s) 239, 689
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 2 cut(s) 182, 956
Csp6I GTAC 1 cut(s) 355
CviAII CATG 3 cut(s) 163, 295, 958
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 4 cut(s) 290, 348, 413, 771
DpnI GATC 3 cut(s) 167, 366, 674
DpnII GATC 3 cut(s) 165, 364, 672
Eam1104I CTCTTC 1 cut(s) 932
EarI CTCTTC 1 cut(s) 932
Eco130I CCWWGG 2 cut(s) 372, 676
Eco147I AGGCCT 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 199, 658
EcoT14I CCWWGG 2 cut(s) 372, 676
EcoT22I ATGCAT 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 372, 676
FaeI CATG 3 cut(s) 166, 298, 961
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 2 cut(s) 562, 571
FatI CATG 3 cut(s) 162, 294, 957
FauNDI CATATG 1 cut(s) 435
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 1 cut(s) 917
Fnu4HI GCNGC 6 cut(s) 105, 264, 822, 825, 828, 831
FokI GGATG 4 cut(s) 95, 286, 676, 725
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 6 cut(s) 105, 264, 822, 825, 828, 831
FspBI CTAG 4 cut(s) 113, 135, 267, 533
GlaI GCGC 1 cut(s) 924
GluI GCNGC 6 cut(s) 105, 264, 822, 825, 828, 831
GsaI CCCAGC 2 cut(s) 870, 897
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 3 cut(s) 189, 401, 492
HapII CCGG 4 cut(s) 240, 402, 494, 690
HgaI GACGC 2 cut(s) 182, 956
HhaI GCGC 1 cut(s) 925
Hin1II CATG 3 cut(s) 166, 298, 961
Hin6I GCGC 1 cut(s) 923
HinP1I GCGC 1 cut(s) 923
HinfI GANTC 5 cut(s) 310, 324, 472, 509, 932
HpaII CCGG 4 cut(s) 240, 402, 494, 690
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 355, 613, 918
Hpy188I TCNGA 4 cut(s) 335, 601, 672, 902
Hpy188III TCNNGA 5 cut(s) 22, 314, 513, 710, 725
Hpy8I GTNNAC 3 cut(s) 355, 613, 918
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 2 cut(s) 731, 785
HpyCH4III ACNGT 4 cut(s) 14, 211, 562, 617
HpyCH4V TGCA 7 cut(s) 17, 263, 461, 539, 572, 667, 824
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 260, 295, 344, 536, 635, 827, 830
HpyF3I CTNAG 4 cut(s) 290, 348, 413, 771
Hsp92II CATG 3 cut(s) 166, 298, 961
HspAI GCGC 1 cut(s) 923
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 3 cut(s) 165, 364, 672
LguI GCTCTTC 1 cut(s) 932
LmnI GCTCC 2 cut(s) 336, 344
Lsp1109I GCAGC 6 cut(s) 91, 275, 808, 817, 836, 839
LweI GCATC 3 cut(s) 517, 654, 676
MaeI CTAG 4 cut(s) 113, 135, 267, 533
MaeIII GTNAC 4 cut(s) 31, 275, 416, 562
MalI GATC 3 cut(s) 167, 366, 674
MboI GATC 3 cut(s) 165, 364, 672
MboII GAAGA 3 cut(s) 333, 788, 919
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 225, 333
MluCI AATT 7 cut(s) 38, 99, 150, 446, 595, 681, 962
MlyI GAGTC 2 cut(s) 319, 503
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 7 cut(s) 172, 224, 343, 509, 548, 745, 846
Mph1103I ATGCAT 1 cut(s) 669
MroXI GAANNNNTTC 2 cut(s) 735, 795
MseI TTAA 2 cut(s) 41, 381
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 4 cut(s) 240, 402, 494, 690
MspR9I CCNGG 4 cut(s) 201, 403, 494, 660
MvaI CCWGG 2 cut(s) 201, 660
MwoI GCNNNNNNNGC 8 cut(s) 101, 260, 295, 344, 536, 635, 827, 830
NciI CCSGG 2 cut(s) 403, 494
NdeI CATATG 1 cut(s) 435
NdeII GATC 3 cut(s) 165, 364, 672
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 3 cut(s) 166, 298, 961
NlaIV GGNNCC 2 cut(s) 126, 688
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 1 cut(s) 298
PaeI GCATGC 1 cut(s) 298
PceI AGGCCT 1 cut(s) 189
PciSI GCTCTTC 1 cut(s) 932
PdmI GAANNNNTTC 2 cut(s) 735, 795
PfeI GAWTC 3 cut(s) 324, 472, 932
PkrI GCNGC 6 cut(s) 106, 265, 823, 826, 829, 832
PleI GAGTC 2 cut(s) 318, 503
PpsI GAGTC 2 cut(s) 318, 503
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 199, 658
PspFI CCCAGC 2 cut(s) 866, 893
PspGI CCWGG 2 cut(s) 199, 658
PspN4I GGNNCC 2 cut(s) 126, 688
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 826
PstNI CAGNNNCTG 4 cut(s) 368, 566, 830, 833
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 932
SaqAI TTAA 2 cut(s) 41, 381
SatI GCNGC 6 cut(s) 105, 264, 822, 825, 828, 831
Sau3AI GATC 3 cut(s) 165, 364, 672
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 2 cut(s) 319, 503
ScrFI CCNGG 4 cut(s) 201, 403, 494, 660
SduI GDGCHC 2 cut(s) 225, 333
SfaNI GCATC 3 cut(s) 517, 654, 676
SfcI CTRYAG 1 cut(s) 822
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 1 cut(s) 298
Sse9I AATT 7 cut(s) 38, 99, 150, 446, 595, 681, 962
SseBI AGGCCT 1 cut(s) 189
SspMI CTAG 4 cut(s) 113, 135, 267, 533
StuI AGGCCT 1 cut(s) 189
StyD4I CCNGG 4 cut(s) 199, 401, 492, 658
StyI CCWWGG 2 cut(s) 372, 676
TaaI ACNGT 4 cut(s) 14, 211, 562, 617
TaqI TCGA 5 cut(s) 97, 315, 726, 930, 966
TasI AATT 7 cut(s) 38, 99, 150, 446, 595, 681, 962
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 3 cut(s) 324, 472, 932
Tru1I TTAA 2 cut(s) 41, 381
Tru9I TTAA 2 cut(s) 41, 381
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 6 cut(s) 104, 263, 821, 824, 827, 830
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 495, 685, 801
TspRI CASTG 1 cut(s) 493
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 2 cut(s) 595, 962
XceI RCATGY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 917
XmnI GAANNNNTTC 2 cut(s) 735, 795
XspI CTAG 4 cut(s) 113, 135, 267, 533
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.