Rorug02G0640200

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
75251926 .. 75252786
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0640200.1

Sequence Viewer

Length: 765 bp
ATGGTGCCCTGCGTGGCCTCTTTTGATTGGCTATTTGGACCACTCATCAGTCCTATCGCTGTACTGAAAATAAAAAGCGTTTGTGATTCTTTGGATGCTAACGGATATGTTTCTATTTCCGATTTCGTTCATACAGATGAAGGCGAAATAAAAATCGTCAGGCAGGCTCGTGTCTACCTTTCTTACATGACCAAGACATACAGCGGTGGTGCTAACGGCGGCGCTGACGGGCTTACTGGCAGCTCAGTAGTAGCATGTGGCGTCTTTGTTGAGGACCACACATGGGCAGCATGGCAGTTTTGTACTCTTAACCTACCTTTTATCCCGGACAAGTTTCAACAGGCGAGTCTGACACCGCCCACAACAGATATAGATGCAAAGTTTGCCTTGGGGTATGGCTTCGGAGGTGAGTTGGCCGCCACAGTTTTTGATCCCTCTCCCACAGGCAGGCATCGAGTGAGAGTTTGGCAGCTTCACGAGAACCTCTGGCAAGTTGTGGTGAACATAAGGCTCACGTCGGACCCGTCCCTGGCAATCACATATCCTTATGTGCCGTTGTGCTTTCTCACGGGTAGATTCAATAATCAAGGGCTAAATATACTATTTTTATTCGATGGTGATACTTTGATTAAGATCAGACTTGTAGAAGAGGATGACTTGCTTGCTACAAAACTTGATGTGCTACATCCAGGGCCGTGCCTAGGCCAAGGCAATCAAGGCGACAGCCTTAGGCCTCAGGCTACGGGAGACCTCGCATTTTTCTAA

Protein Analysis

254

Amino Acids

27.75

Weight (kDa)

4.88

Isoelectric Point (pI)

29.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 174
AciI CCGC 4 cut(s) 204, 219, 356, 417
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 63, 304
AfiI CCNNNNNNNGG 4 cut(s) 283, 447, 529, 701
AgsI TTSAA 2 cut(s) 338, 580
AjiI CACGTC 1 cut(s) 516
AjnI CCWGG 2 cut(s) 528, 688
AluBI AGCT 2 cut(s) 243, 472
AluI AGCT 2 cut(s) 243, 472
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 1 cut(s) 425
AoxI GGCC 5 cut(s) 15, 414, 692, 703, 731
ApeKI GCWGC 3 cut(s) 240, 287, 469
AspA2I CCTAGG 1 cut(s) 700
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 4 cut(s) 38, 274, 520, 692
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 419, 511, 629
AvaII GGWCC 3 cut(s) 38, 274, 520
AvrII CCTAGG 1 cut(s) 700
AxyI CCTNAGG 2 cut(s) 728, 735
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 2 cut(s) 168, 476
BbvI GCAGC 3 cut(s) 252, 299, 481
BccI CCATC 1 cut(s) 608
BceAI ACGGC 3 cut(s) 232, 538, 679
BciT130I CCWGG 2 cut(s) 530, 690
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 1 cut(s) 701
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 5 cut(s) 220, 241, 288, 417, 470
BlnI CCTAGG 1 cut(s) 700
BlsI GCNGC 5 cut(s) 221, 242, 289, 418, 471
Bme1390I CCNGG 3 cut(s) 326, 530, 690
Bme18I GGWCC 3 cut(s) 38, 274, 520
BmgBI CACGTC 1 cut(s) 516
BmgT120I GGNCC 4 cut(s) 38, 274, 520, 692
BmiI GGNNCC 2 cut(s) 6, 522
BmrFI CCNGG 3 cut(s) 326, 530, 690
BmsI GCATC 3 cut(s) 85, 364, 460
BpuMI CCSGG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 5 cut(s) 387, 528, 689, 700, 706
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 447, 529, 701
Bse1I ACTGG 1 cut(s) 241
Bse21I CCTNAGG 2 cut(s) 728, 735
Bse8I GATNNNNATC 1 cut(s) 632
BseBI CCWGG 2 cut(s) 530, 690
BseDI CCNNGG 5 cut(s) 387, 528, 689, 700, 706
BseGI GGATG 3 cut(s) 100, 658, 685
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 4 cut(s) 283, 447, 529, 701
BseMII CTCAG 2 cut(s) 258, 749
BseNI ACTGG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 3 cut(s) 252, 299, 481
BshFI GGCC 5 cut(s) 17, 416, 694, 705, 733
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 4 cut(s) 283, 447, 529, 701
BsmAI GTCTC 1 cut(s) 741
BsmFI GGGAC 1 cut(s) 511
BsnI GGCC 5 cut(s) 17, 416, 694, 705, 733
Bso31I GGTCTC 1 cut(s) 741
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 430, 633
BspACI CCGC 4 cut(s) 204, 219, 356, 417
BspANI GGCC 5 cut(s) 17, 416, 694, 705, 733
BspCNI CTCAG 2 cut(s) 257, 748
BspLI GGNNCC 2 cut(s) 6, 522
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 741
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 5 cut(s) 387, 528, 689, 700, 706
BssMI GATC 2 cut(s) 430, 633
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 2 cut(s) 168, 476
BssT1I CCWWGG 3 cut(s) 387, 700, 706
Bst2BI CACGAG 2 cut(s) 168, 476
Bst2UI CCWGG 2 cut(s) 530, 690
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 3 cut(s) 165, 449, 663
BstDEI CTNAG 3 cut(s) 244, 728, 735
BstF5I GGATG 3 cut(s) 100, 658, 685
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 2 cut(s) 433, 636
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 2 cut(s) 430, 633
BstMWI GCNNNNNNNGC 2 cut(s) 383, 717
BstNI CCWGG 2 cut(s) 530, 690
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 3 cut(s) 324, 528, 688
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 252, 299, 481
Bsu36I CCTNAGG 2 cut(s) 728, 735
BsuRI GGCC 5 cut(s) 17, 416, 694, 705, 733
BtrI CACGTC 1 cut(s) 516
BtsCI GGATG 3 cut(s) 100, 658, 685
Cac8I GCNNGC 3 cut(s) 165, 449, 663
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 4 cut(s) 38, 274, 520, 692
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 62, 303
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 4 cut(s) 187, 255, 282, 291
CviQI GTAC 2 cut(s) 62, 303
DdeI CTNAG 3 cut(s) 244, 728, 735
DpnI GATC 2 cut(s) 432, 635
DpnII GATC 2 cut(s) 430, 633
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 3 cut(s) 387, 700, 706
Eco147I AGGCCT 1 cut(s) 733
Eco31I GGTCTC 1 cut(s) 741
Eco47I GGWCC 3 cut(s) 38, 274, 520
Eco81I CCTNAGG 2 cut(s) 728, 735
EcoRII CCWGG 2 cut(s) 528, 688
EcoT14I CCWWGG 3 cut(s) 387, 700, 706
ErhI CCWWGG 3 cut(s) 387, 700, 706
FaeI CATG 4 cut(s) 190, 258, 285, 294
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 511
FatI CATG 4 cut(s) 186, 254, 281, 290
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 5 cut(s) 220, 241, 288, 417, 470
FokI GGATG 3 cut(s) 107, 665, 672
Fsp4HI GCNGC 5 cut(s) 220, 241, 288, 417, 470
FspBI CTAG 1 cut(s) 701
GlaI GCGC 1 cut(s) 223
GluI GCNGC 5 cut(s) 220, 241, 288, 417, 470
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 5 cut(s) 17, 416, 694, 705, 733
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 4 cut(s) 190, 258, 285, 294
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 3 cut(s) 86, 346, 576
HpaII CCGG 1 cut(s) 326
HphI GGTGA 3 cut(s) 419, 511, 629
Hpy166II GTNNAC 2 cut(s) 175, 502
Hpy188I TCNGA 5 cut(s) 121, 351, 404, 520, 638
Hpy188III TCNNGA 1 cut(s) 476
Hpy8I GTNNAC 2 cut(s) 175, 502
Hpy99I CGWCG 1 cut(s) 520
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 717
HpyF3I CTNAG 3 cut(s) 244, 728, 735
HpySE526I ACGT 1 cut(s) 515
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 4 cut(s) 190, 258, 285, 294
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 430, 633
Lsp1109I GCAGC 3 cut(s) 252, 299, 481
LweI GCATC 3 cut(s) 85, 364, 460
MaeI CTAG 1 cut(s) 701
MaeII ACGT 1 cut(s) 515
MalI GATC 2 cut(s) 432, 635
MboI GATC 2 cut(s) 430, 633
MboII GAAGA 1 cut(s) 659
MhlI GDGCHC 1 cut(s) 9
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 8 cut(s) 28, 265, 398, 445, 494, 643, 744, 761
MseI TTAA 2 cut(s) 309, 630
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 3 cut(s) 326, 530, 690
MvaI CCWGG 2 cut(s) 530, 690
MwoI GCNNNNNNNGC 2 cut(s) 383, 717
NciI CCSGG 1 cut(s) 326
NdeII GATC 2 cut(s) 430, 633
NlaIII CATG 4 cut(s) 190, 258, 285, 294
NlaIV GGNNCC 2 cut(s) 6, 522
NspI RCATGY 1 cut(s) 258
PceI AGGCCT 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PfeI GAWTC 2 cut(s) 86, 576
PfoI TCCNGGA 1 cut(s) 324
PkrI GCNGC 5 cut(s) 221, 242, 289, 418, 471
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 528, 688
PspGI CCWGG 2 cut(s) 528, 688
PspN4I GGNNCC 2 cut(s) 6, 522
PspPI GGNCC 4 cut(s) 38, 274, 520, 692
RsaI GTAC 2 cut(s) 63, 304
RsaNI GTAC 2 cut(s) 62, 303
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 2 cut(s) 309, 630
SatI GCNGC 5 cut(s) 220, 241, 288, 417, 470
Sau3AI GATC 2 cut(s) 430, 633
Sau96I GGNCC 4 cut(s) 38, 274, 520, 692
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 3 cut(s) 326, 530, 690
SduI GDGCHC 1 cut(s) 9
SetI ASST 9 cut(s) 180, 245, 315, 319, 409, 474, 486, 518, 753
SfaNI GCATC 3 cut(s) 85, 364, 460
SinI GGWCC 3 cut(s) 38, 274, 520
SmiMI CAYNNNNRTG 1 cut(s) 135
SseBI AGGCCT 1 cut(s) 733
SsiI CCGC 4 cut(s) 204, 219, 356, 417
SspMI CTAG 1 cut(s) 701
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 3 cut(s) 324, 528, 688
StyI CCWWGG 3 cut(s) 387, 700, 706
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 518
TaqI TCGA 2 cut(s) 454, 612
TatI WGTACW 2 cut(s) 61, 302
TauI GCSGC 2 cut(s) 222, 419
TfiI GAWTC 2 cut(s) 86, 576
Tru1I TTAA 2 cut(s) 309, 630
Tru9I TTAA 2 cut(s) 309, 630
TseI GCWGC 3 cut(s) 240, 287, 469
TspDTI ATGAA 2 cut(s) 119, 153
TspGWI ACGGA 1 cut(s) 117
VpaK11BI GGWCC 3 cut(s) 38, 274, 520
XceI RCATGY 1 cut(s) 258
XmaJI CCTAGG 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.