MD04G1218200.v1.1

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
30062259 .. 30064924
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1218200.v1.1.491

Sequence Viewer

Length: 819 bp
ATGGAGCCCTGCTCAAGTGACGCCGAGGATAAAGGTCTAATTACGCCAGGGAAGACTGTTCTCATTGAGGCCACGGGTGGCAACACCGGCATTGGATTGGCATTCATTGCAGCAAGCAGGGGCTACAAGGTTAAGGTAACCATGCCATCTTCAATGAGTATTGAGAGAAGAATTGTGCTCCTAGCTTTCGGGGCTGAGGTGTACCTCACAGATCCTGCCAAGGGTACTAAGGGAGTCTTTGATAAAGCCGAGGAATTATTGAGTGACACGCCTAATGGTTATATACTTGGCCAATTTGAAAATCCTGCCAATCCGAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACACAGGAGGGAAGGTTGATGCCCTGGTTTCGGGAATAGGTACTGGGGGTACAGTTGCCGGTGCAGGGACATTCCTTAAAGAGCAGAATCCAGAGATTAAGGTGTACGGTGTAGAACCAGCCGAAAGCCCAGTCTTGAACGGTGGCCAAGCTGGGAAGCATCTGATCCAAGGAATTGGTGCTGGTATCCTACCTGTAGTTCTGGACATTAGCTTGCTTGACGAAGTTATTGAAGTAACAAGTGAGGAAGCAATTGATACCGCGAAGCAGCTTGCCCTGAAAGAAGGTCTTCTGGTGGGGATTTCATCTGGTGCCGCGGCCGCTGCTGCAATAAAGTTGGCTAAGAGGCCGGAAAATGCAGGAAAACTCATTGTTGCTGTGTTCCCCAGTTTTGGAGAGCGTTATCTGTCTTCTGCACTCTTTGATTCCGTTAGGCATGAGGCGGAAAACTTGAGAATTTACTGA

Protein Analysis

273

Amino Acids

28.42

Weight (kDa)

4.99

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 16 - 247 7.7e-60 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 665
AccII CGCG 2 cut(s) 617, 671
AciI CCGC 5 cut(s) 615, 669, 671, 675, 797
AclWI GGATC 2 cut(s) 206, 514
AcoI YGGCCR 3 cut(s) 289, 499, 672
AcsI RAATTY 1 cut(s) 810
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 5 cut(s) 203, 226, 397, 406, 461
AfiI CCNNNNNNNGG 4 cut(s) 221, 385, 420, 746
AgsI TTSAA 4 cut(s) 153, 299, 493, 587
AjnI CCWGG 2 cut(s) 46, 378
AluBI AGCT 4 cut(s) 185, 506, 567, 625
AluI AGCT 4 cut(s) 185, 506, 567, 625
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 206, 514
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 6 cut(s) 69, 289, 337, 499, 672, 701
ApeKI GCWGC 4 cut(s) 110, 622, 677, 680
ApoI RAATTY 1 cut(s) 810
ArsI GACNNNNNNTTYG 2 cut(s) 471, 503
Asp700I GAANNNNTTC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 341
BalI TGGCCA 2 cut(s) 291, 501
BanI GGYRCC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 3 cut(s) 59, 635, 756
Bbv12I GWGCWC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 122, 634, 664, 667
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 2 cut(s) 48, 380
BciVI GTATCC 1 cut(s) 551
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 549
BfuI GTATCC 1 cut(s) 551
BisI GCNGC 7 cut(s) 111, 623, 669, 672, 675, 678, 681
BlsI GCNGC 7 cut(s) 112, 624, 670, 673, 676, 679, 682
Bme1390I CCNGG 3 cut(s) 48, 341, 380
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 6, 667
BmrFI CCNGG 3 cut(s) 48, 341, 380
BmrI ACTGGG 3 cut(s) 408, 479, 735
BmsI GCATC 2 cut(s) 364, 523
BmuI ACTGGG 3 cut(s) 408, 479, 735
BpiI GAAGAC 3 cut(s) 59, 635, 756
BplI GAGNNNNNCTC 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 8 cut(s) 24, 47, 72, 219, 249, 378, 523, 669
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 385, 420, 746
Bse118I RCCGGY 2 cut(s) 86, 413
Bse1I ACTGG 4 cut(s) 340, 403, 485, 741
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 2 cut(s) 48, 380
BseDI CCNNGG 8 cut(s) 24, 47, 72, 219, 249, 378, 523, 669
BseLI CCNNNNNNNGG 4 cut(s) 221, 385, 420, 746
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 4 cut(s) 340, 403, 485, 741
BseX3I CGGCCG 1 cut(s) 672
BseXI GCAGC 4 cut(s) 122, 634, 664, 667
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 2 cut(s) 438, 753
Bsh1236I CGCG 2 cut(s) 617, 671
Bsh1285I CGRYCG 1 cut(s) 675
BshFI GGCC 6 cut(s) 71, 291, 339, 501, 674, 703
BshNI GGYRCC 1 cut(s) 665
BsiEI CGRYCG 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 4 cut(s) 87, 341, 414, 704
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 4 cut(s) 221, 385, 420, 746
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 6 cut(s) 71, 291, 339, 501, 674, 703
Bsp1286I GDGCHC 2 cut(s) 9, 180
Bsp143I GATC 2 cut(s) 211, 519
BspACI CCGC 5 cut(s) 615, 669, 671, 675, 797
BspANI GGCC 6 cut(s) 71, 291, 339, 501, 674, 703
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 2 cut(s) 617, 671
BspLI GGNNCC 2 cut(s) 6, 667
BspPI GGATC 2 cut(s) 206, 514
BspT107I GGYRCC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 2 cut(s) 86, 413
BsrI ACTGG 4 cut(s) 340, 403, 485, 741
BssAI RCCGGY 2 cut(s) 86, 413
BssECI CCNNGG 8 cut(s) 24, 47, 72, 219, 249, 378, 523, 669
BssMI GATC 2 cut(s) 211, 519
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 219, 523
Bst2UI CCWGG 2 cut(s) 48, 380
Bst4CI ACNGT 4 cut(s) 58, 409, 464, 497
BstACI GRCGYC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 115, 569, 627
BstDEI CTNAG 3 cut(s) 195, 228, 696
BstDSI CCRYGG 2 cut(s) 72, 669
BstEII GGTNACC 1 cut(s) 136
BstFNI CGCG 2 cut(s) 617, 671
BstKTI GATC 2 cut(s) 214, 522
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 211, 519
BstMCI CGRYCG 1 cut(s) 675
BstMWI GCNNNNNNNGC 6 cut(s) 87, 107, 191, 674, 677, 680
BstNI CCWGG 2 cut(s) 48, 380
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 3 cut(s) 46, 339, 378
BstSFI CTRYAG 1 cut(s) 549
BstUI CGCG 2 cut(s) 617, 671
BstV1I GCAGC 4 cut(s) 122, 634, 664, 667
BstV2I GAAGAC 3 cut(s) 59, 635, 756
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 551
BsuRI GGCC 6 cut(s) 71, 291, 339, 501, 674, 703
BtgI CCRYGG 2 cut(s) 72, 669
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 3 cut(s) 115, 569, 627
CaiI CAGNNNCTG 1 cut(s) 215
CciNI GCGGCCGC 1 cut(s) 672
Cfr10I RCCGGY 2 cut(s) 86, 413
Cfr13I GGNCC 1 cut(s) 338
Cfr42I CCGCGG 1 cut(s) 672
CseI GACGC 1 cut(s) 29
Csp6I GTAC 5 cut(s) 202, 225, 396, 405, 460
CviAII CATG 2 cut(s) 142, 791
CviQI GTAC 5 cut(s) 202, 225, 396, 405, 460
DdeI CTNAG 3 cut(s) 195, 228, 696
DpnI GATC 2 cut(s) 213, 521
DpnII GATC 2 cut(s) 211, 519
EaeI YGGCCR 3 cut(s) 289, 499, 672
EagI CGGCCG 1 cut(s) 672
EciI GGCGGA 1 cut(s) 812
EclXI CGGCCG 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 219, 523
Eco24I GRGCYC 1 cut(s) 9
Eco52I CGGCCG 1 cut(s) 672
Eco91I GGTNACC 1 cut(s) 136
EcoO65I GGTNACC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 46, 378
EcoT14I CCWWGG 2 cut(s) 219, 523
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 219, 523
FaeI CATG 2 cut(s) 145, 794
FaiI YATR 6 cut(s) 143, 282, 284, 327, 349, 792
FalI AAGNNNNNCTT 4 cut(s) 221, 253, 627, 659
FaqI GGGAC 1 cut(s) 436
FatI CATG 2 cut(s) 141, 790
Fnu4HI GCNGC 7 cut(s) 111, 623, 669, 672, 675, 678, 681
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 7 cut(s) 111, 623, 669, 672, 675, 678, 681
FspBI CTAG 1 cut(s) 182
GluI GCNGC 7 cut(s) 111, 623, 669, 672, 675, 678, 681
GsaI CCCAGC 1 cut(s) 510
HaeIII GGCC 6 cut(s) 71, 291, 339, 501, 674, 703
HapII CCGG 4 cut(s) 87, 341, 414, 704
HgaI GACGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 145, 794
HinfI GANTC 4 cut(s) 234, 319, 442, 779
HpaII CCGG 4 cut(s) 87, 341, 414, 704
Hpy166II GTNNAC 2 cut(s) 202, 460
Hpy188I TCNGA 2 cut(s) 315, 519
Hpy188III TCNNGA 4 cut(s) 387, 446, 490, 557
Hpy8I GTNNAC 2 cut(s) 202, 460
HpyAV CCTTC 2 cut(s) 361, 632
HpyCH4III ACNGT 4 cut(s) 58, 409, 464, 497
HpyCH4V TGCA 5 cut(s) 110, 419, 683, 713, 770
HpyF10VI GCNNNNNNNGC 6 cut(s) 87, 107, 191, 674, 677, 680
HpyF3I CTNAG 3 cut(s) 195, 228, 696
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 145, 794
KspI CCGCGG 1 cut(s) 672
Kzo9I GATC 2 cut(s) 211, 519
LmnI GCTCC 2 cut(s) 4, 183
Lsp1109I GCAGC 4 cut(s) 122, 634, 664, 667
LweI GCATC 2 cut(s) 364, 523
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 4 cut(s) 17, 136, 263, 589
MalI GATC 2 cut(s) 213, 521
MboI GATC 2 cut(s) 211, 519
MboII GAAGA 6 cut(s) 64, 141, 180, 328, 635, 756
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 2 cut(s) 9, 180
MlsI TGGCCA 2 cut(s) 291, 501
MluCI AATT 7 cut(s) 39, 171, 254, 293, 528, 606, 810
MluNI TGGCCA 2 cut(s) 291, 501
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 9 cut(s) 19, 61, 190, 215, 244, 356, 592, 693, 787
Mox20I TGGCCA 2 cut(s) 291, 501
MroXI GAANNNNTTC 1 cut(s) 642
MscI TGGCCA 2 cut(s) 291, 501
MseI TTAA 3 cut(s) 132, 432, 453
Msp20I TGGCCA 2 cut(s) 291, 501
MspA1I CMGCKG 2 cut(s) 671, 677
MspI CCGG 4 cut(s) 87, 341, 414, 704
MspR9I CCNGG 3 cut(s) 48, 341, 380
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 2 cut(s) 48, 380
MvnI CGCG 2 cut(s) 617, 671
MwoI GCNNNNNNNGC 6 cut(s) 87, 107, 191, 674, 677, 680
NciI CCSGG 1 cut(s) 341
NdeII GATC 2 cut(s) 211, 519
NlaIII CATG 2 cut(s) 145, 794
NlaIV GGNNCC 2 cut(s) 6, 667
NmeAIII GCCGAG 2 cut(s) 49, 274
NmuCI GTSAC 2 cut(s) 17, 263
NotI GCGGCCGC 1 cut(s) 672
PctI GAATGC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 3 cut(s) 319, 442, 779
PkrI GCNGC 7 cut(s) 112, 624, 670, 673, 676, 679, 682
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 46, 378
PspEI GGTNACC 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 46, 378
PspN4I GGNNCC 2 cut(s) 6, 667
PspPI GGNCC 1 cut(s) 338
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 5 cut(s) 203, 226, 397, 406, 461
RsaNI GTAC 5 cut(s) 202, 225, 396, 405, 460
SacII CCGCGG 1 cut(s) 672
SaqAI TTAA 3 cut(s) 132, 432, 453
SatI GCNGC 7 cut(s) 111, 623, 669, 672, 675, 678, 681
Sau3AI GATC 2 cut(s) 211, 519
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 3 cut(s) 48, 341, 380
SduI GDGCHC 2 cut(s) 9, 180
SfaNI GCATC 2 cut(s) 364, 523
SfcI CTRYAG 1 cut(s) 549
Sfr303I CCGCGG 1 cut(s) 672
SgrBI CCGCGG 1 cut(s) 672
SmlI CTYRAG 2 cut(s) 13, 805
SmoI CTYRAG 2 cut(s) 13, 805
Sse9I AATT 7 cut(s) 39, 171, 254, 293, 528, 606, 810
SsiI CCGC 5 cut(s) 615, 669, 671, 675, 797
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 46, 339, 378
StyI CCWWGG 2 cut(s) 219, 523
TaaI ACNGT 4 cut(s) 58, 409, 464, 497
TasI AATT 7 cut(s) 39, 171, 254, 293, 528, 606, 810
TauI GCSGC 3 cut(s) 671, 674, 677
TfiI GAWTC 3 cut(s) 319, 442, 779
Tru1I TTAA 3 cut(s) 132, 432, 453
Tru9I TTAA 3 cut(s) 132, 432, 453
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 17, 263
TseI GCWGC 4 cut(s) 110, 622, 677, 680
Tsp45I GTSAC 2 cut(s) 17, 263
TspDTI ATGAA 4 cut(s) 94, 311, 342, 648
TspGWI ACGGA 1 cut(s) 772
TspRI CASTG 1 cut(s) 340
XapI RAATTY 1 cut(s) 810
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.