AT3G04940

cysteine synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
1365090 .. 1367844
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04940.2

Sequence Viewer

Length: 975 bp
ATGGAGGAGGACCGGTGTTCGATCAAGGATGATGCAACTCAATTGATAGGTAACACCCCAATGGTATATCTGAACAACATTGTGGATGGTTGTGTAGCTCGTATTGCAGCTAAGCTTGAAATGATGGAGCCTTGCTCTAGTGTCAAGGAGCGAATTGCTTATGGTATGATTAAAGATGCAGAAGACAAGGGATTGATTACTCCTGGGAAGAGCACACTGATTGAGGCTACCTCTGGTAACACCGGGATTGGTTTAGCCTTCATCGGTGCAGCTAAAGGTTACAAAGTGGTCCTCACAATGCCCTCATCAATGAGCCTTGAGAGAAAAATCATTCTTTTAGCATTAGGTGCGGAGGTTCACCTCACAGATCCTAGTAAAGGCGTTCAAGGAATAATCGACAAAGCTGAAGAGATATGTAGCAAAAATCCAGATAGTATCATGCTAGAACAGTTCAAAAATCCTTCAAACCCGCAAACTCATTATCGAACCACGGGTCCAGAGATATGGAGAGACTCTGCAGGGGAAGTAGACATATTGGTTGCCGGTGTTGGAACTGGTGGAACGCTTTCCGGATCAGGAAGATTCCTCAAGGAGAAGAATAAAGACTTTAAGGTTTATGGTGTGGAACCTACAGAAAGTGCGGTAATAAGTGGAGGCAAACCGGGTACACATTTGATCCAAGGTATTGGGGCTGGACTCATCCCAGACAATTTGGATTTCAACGTTCTTGATGAAGTCATCCAAGTGACAAGTGTGGAAGCAATTGAAACAGCCAAACTTCTTGCCCTGAAAGAAGGATTACTGGTGGGAATATCTTCTGGAGCTGCTGCAGCCGCTGCGATAAAGGTGGCAAAGCGGCCAGAAAACGCCGGCAAACTCATAGTTGTGATTTTCCCTAGCGGTGGGGAACGTTACCTATCGACCTCATTGTTCGAATCAGTCAGACATGAAGCAGAGAATTTGCCAATTCAATGA

Protein Analysis

324

Amino Acids

34.29

Weight (kDa)

5.23

Isoelectric Point (pI)

20.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 13 - 299 1.4e-69 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 569
AciI CCGC 6 cut(s) 350, 470, 641, 834, 856, 900
AclI AACGTT 2 cut(s) 723, 910
AclWI GGATC 3 cut(s) 362, 580, 670
AcoI YGGCCR 1 cut(s) 857
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 667
AfiI CCNNNNNNNGG 2 cut(s) 377, 902
AgeI ACCGGT 1 cut(s) 12
AgsI TTSAA 7 cut(s) 119, 386, 454, 465, 721, 767, 971
AjnI CCWGG 1 cut(s) 202
AloI GAACNNNNNNTCC 2 cut(s) 478, 510
AluBI AGCT 6 cut(s) 98, 110, 115, 272, 404, 824
AluI AGCT 6 cut(s) 98, 110, 115, 272, 404, 824
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 504
AlwI GGATC 3 cut(s) 362, 580, 670
AlwNI CAGNNNCTG 1 cut(s) 836
Aor13HI TCCGGA 1 cut(s) 569
AoxI GGCC 1 cut(s) 857
ApeKI GCWGC 6 cut(s) 107, 269, 824, 827, 830, 836
ApoI RAATTY 1 cut(s) 958
ArsI GACNNNNNNTTYG 2 cut(s) 478, 510
AsiGI ACCGGT 1 cut(s) 12
Asp700I GAANNNNTTC 2 cut(s) 565, 814
AspS9I GGNCC 3 cut(s) 10, 289, 494
AsuC2I CCSGG 2 cut(s) 244, 663
AsuHPI GGTGA 1 cut(s) 350
AsuII TTCGAA 1 cut(s) 933
AvaII GGWCC 3 cut(s) 10, 289, 494
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 6 cut(s) 119, 281, 811, 814, 823, 842
BccI CCATC 2 cut(s) 80, 118
BciT130I CCWGG 1 cut(s) 204
BcnI CCSGG 2 cut(s) 244, 663
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 4 cut(s) 138, 372, 443, 897
BfmI CTRYAG 3 cut(s) 516, 630, 828
BisI GCNGC 8 cut(s) 108, 270, 825, 828, 831, 834, 837, 857
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 8 cut(s) 109, 271, 826, 829, 832, 835, 838, 858
Bme1390I CCNGG 3 cut(s) 204, 244, 663
Bme18I GGWCC 3 cut(s) 10, 289, 494
BmgT120I GGNCC 3 cut(s) 10, 289, 494
BmiI GGNNCC 3 cut(s) 129, 495, 627
BmrFI CCNGG 3 cut(s) 204, 244, 663
BmsI GCATC 2 cut(s) 22, 166
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 4 cut(s) 119, 151, 215, 247
BpmI CTGGAG 1 cut(s) 840
Bpu1102I GCTNAGC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 933
BpuEI CTTGAG 2 cut(s) 338, 572
BpuMI CCSGG 2 cut(s) 244, 663
BsaJI CCNNGG 3 cut(s) 203, 489, 679
BsaWI WCCGGW 2 cut(s) 12, 569
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 902
Bse118I RCCGGY 3 cut(s) 12, 542, 869
Bse1I ACTGG 2 cut(s) 559, 807
BseAI TCCGGA 1 cut(s) 569
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 203, 489, 679
BseGI GGATG 4 cut(s) 34, 91, 699, 738
BseLI CCNNNNNNNGG 2 cut(s) 377, 902
BseNI ACTGG 2 cut(s) 559, 807
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 6 cut(s) 119, 281, 811, 814, 823, 842
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 859
BshTI ACCGGT 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 6 cut(s) 13, 243, 543, 570, 662, 870
BslI CCNNNNNNNGG 2 cut(s) 377, 902
BsmAI GTCTC 1 cut(s) 504
BsnI GGCC 1 cut(s) 859
Bsp119I TTCGAA 1 cut(s) 933
Bsp1286I GDGCHC 1 cut(s) 215
Bsp13I TCCGGA 1 cut(s) 569
Bsp143I GATC 4 cut(s) 21, 367, 572, 675
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 6 cut(s) 350, 470, 641, 834, 856, 900
BspANI GGCC 1 cut(s) 859
BspEI TCCGGA 1 cut(s) 569
BspLI GGNNCC 3 cut(s) 129, 495, 627
BspMAI CTGCAG 2 cut(s) 520, 832
BspPI GGATC 3 cut(s) 362, 580, 670
BspQI GCTCTTC 1 cut(s) 203
BspT104I TTCGAA 1 cut(s) 933
BsrFI RCCGGY 3 cut(s) 12, 542, 869
BsrI ACTGG 2 cut(s) 559, 807
BssAI RCCGGY 3 cut(s) 12, 542, 869
BssECI CCNNGG 3 cut(s) 203, 489, 679
BssMI GATC 4 cut(s) 21, 367, 572, 675
BssT1I CCWWGG 1 cut(s) 679
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 2 cut(s) 203, 402
BstAPI GCANNNNNTGC 2 cut(s) 347, 836
BstBI TTCGAA 1 cut(s) 933
BstC8I GCNNGC 1 cut(s) 871
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 489
BstENI CCTNNNNNAGG 1 cut(s) 375
BstF5I GGATG 4 cut(s) 34, 91, 699, 738
BstKTI GATC 4 cut(s) 24, 370, 575, 678
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 4 cut(s) 21, 367, 572, 675
BstMWI GCNNNNNNNGC 5 cut(s) 104, 347, 830, 833, 836
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 3 cut(s) 202, 242, 661
BstSFI CTRYAG 3 cut(s) 516, 630, 828
BstV1I GCAGC 6 cut(s) 119, 281, 811, 814, 823, 842
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 2 cut(s) 504, 686
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 1 cut(s) 859
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 4 cut(s) 34, 91, 699, 738
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 871
CaiI CAGNNNCTG 1 cut(s) 836
Cfr10I RCCGGY 3 cut(s) 12, 542, 869
Cfr13I GGNCC 3 cut(s) 10, 289, 494
Csp6I GTAC 1 cut(s) 666
CspAI ACCGGT 1 cut(s) 12
CviAII CATG 2 cut(s) 439, 947
CviQI GTAC 1 cut(s) 666
DdeI CTNAG 1 cut(s) 111
DpnI GATC 4 cut(s) 23, 369, 574, 677
DpnII GATC 4 cut(s) 21, 367, 572, 675
EaeI YGGCCR 1 cut(s) 857
Eam1104I CTCTTC 2 cut(s) 203, 402
EarI CTCTTC 2 cut(s) 203, 402
Eco130I CCWWGG 1 cut(s) 679
Eco47I GGWCC 3 cut(s) 10, 289, 494
Eco57I CTGAAG 1 cut(s) 426
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 2 cut(s) 442, 950
FatI CATG 2 cut(s) 438, 946
FauI CCCGC 1 cut(s) 477
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 8 cut(s) 108, 270, 825, 828, 831, 834, 837, 857
FokI GGATG 4 cut(s) 41, 98, 686, 725
Fsp4HI GCNGC 8 cut(s) 108, 270, 825, 828, 831, 834, 837, 857
FspBI CTAG 4 cut(s) 138, 372, 443, 897
GluI GCNGC 8 cut(s) 108, 270, 825, 828, 831, 834, 837, 857
GsuI CTGGAG 1 cut(s) 840
HaeIII GGCC 1 cut(s) 859
HapII CCGG 6 cut(s) 13, 243, 543, 570, 662, 870
Hin1II CATG 2 cut(s) 442, 950
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 4 cut(s) 512, 582, 696, 935
HpaII CCGG 6 cut(s) 13, 243, 543, 570, 662, 870
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 358, 529, 668
Hpy188I TCNGA 2 cut(s) 72, 944
Hpy188III TCNNGA 6 cut(s) 428, 497, 570, 576, 728, 819
Hpy8I GTNNAC 3 cut(s) 358, 529, 668
HpyAV CCTTC 3 cut(s) 268, 471, 788
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4IV ACGT 2 cut(s) 723, 910
HpyCH4V TGCA 6 cut(s) 35, 107, 179, 269, 518, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 347, 830, 833, 836
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 2 cut(s) 723, 910
Hsp92II CATG 2 cut(s) 442, 950
Kpn2I TCCGGA 1 cut(s) 569
KroI GCCGGC 1 cut(s) 869
KroNI GCCGGC 1 cut(s) 871
Kzo9I GATC 4 cut(s) 21, 367, 572, 675
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 3 cut(s) 127, 148, 821
Lsp1109I GCAGC 6 cut(s) 119, 281, 811, 814, 823, 842
LweI GCATC 2 cut(s) 22, 166
MaeI CTAG 4 cut(s) 138, 372, 443, 897
MaeII ACGT 2 cut(s) 723, 910
MaeIII GTNAC 5 cut(s) 50, 236, 278, 745, 911
MalI GATC 4 cut(s) 23, 369, 574, 677
MboI GATC 4 cut(s) 21, 367, 572, 675
MboII GAAGA 6 cut(s) 194, 220, 419, 591, 607, 807
MfeI CAATTG 2 cut(s) 41, 762
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 6 cut(s) 41, 153, 709, 762, 958, 966
MlyI GAGTC 2 cut(s) 506, 690
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 9 cut(s) 217, 241, 302, 313, 346, 371, 596, 647, 934
MroI TCCGGA 1 cut(s) 569
MroNI GCCGGC 1 cut(s) 869
MroXI GAANNNNTTC 2 cut(s) 565, 814
MseI TTAA 2 cut(s) 171, 609
MslI CAYNNNNRTG 3 cut(s) 59, 743, 884
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 6 cut(s) 13, 243, 543, 570, 662, 870
MspR9I CCNGG 3 cut(s) 204, 244, 663
MunI CAATTG 2 cut(s) 41, 762
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 5 cut(s) 104, 347, 830, 833, 836
NaeI GCCGGC 1 cut(s) 871
NciI CCSGG 2 cut(s) 244, 663
NdeII GATC 4 cut(s) 21, 367, 572, 675
NgoMIV GCCGGC 1 cut(s) 869
NlaIII CATG 2 cut(s) 442, 950
NlaIV GGNNCC 3 cut(s) 129, 495, 627
NmuCI GTSAC 1 cut(s) 745
NspV TTCGAA 1 cut(s) 933
PciSI GCTCTTC 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 871
PdmI GAANNNNTTC 2 cut(s) 565, 814
PfeI GAWTC 2 cut(s) 582, 935
PinAI ACCGGT 1 cut(s) 12
PkrI GCNGC 8 cut(s) 109, 271, 826, 829, 832, 835, 838, 858
PleI GAGTC 2 cut(s) 506, 690
PpsI GAGTC 2 cut(s) 506, 690
Psp1406I AACGTT 2 cut(s) 723, 910
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 3 cut(s) 129, 495, 627
PspPI GGNCC 3 cut(s) 10, 289, 494
PstI CTGCAG 2 cut(s) 520, 832
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 667
RsaNI GTAC 1 cut(s) 666
RseI CAYNNNNRTG 3 cut(s) 59, 743, 884
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 2 cut(s) 171, 609
SatI GCNGC 8 cut(s) 108, 270, 825, 828, 831, 834, 837, 857
Sau3AI GATC 4 cut(s) 21, 367, 572, 675
Sau96I GGNCC 3 cut(s) 10, 289, 494
SchI GAGTC 2 cut(s) 506, 690
ScrFI CCNGG 3 cut(s) 204, 244, 663
SduI GDGCHC 1 cut(s) 215
SfaNI GCATC 2 cut(s) 22, 166
SfcI CTRYAG 3 cut(s) 516, 630, 828
SfuI TTCGAA 1 cut(s) 933
SinI GGWCC 3 cut(s) 10, 289, 494
SmiMI CAYNNNNRTG 3 cut(s) 59, 743, 884
SmlI CTYRAG 2 cut(s) 317, 587
SmoI CTYRAG 2 cut(s) 317, 587
Sse9I AATT 6 cut(s) 41, 153, 709, 762, 958, 966
SsiI CCGC 6 cut(s) 350, 470, 641, 834, 856, 900
SspMI CTAG 4 cut(s) 138, 372, 443, 897
StyD4I CCNGG 3 cut(s) 202, 242, 661
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 1 cut(s) 450
TaiI ACGT 2 cut(s) 726, 913
TaqI TCGA 5 cut(s) 20, 396, 484, 920, 933
TasI AATT 6 cut(s) 41, 153, 709, 762, 958, 966
TauI GCSGC 2 cut(s) 836, 859
TfiI GAWTC 2 cut(s) 582, 935
Tru1I TTAA 2 cut(s) 171, 609
Tru9I TTAA 2 cut(s) 171, 609
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 6 cut(s) 107, 269, 824, 827, 830, 836
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 3 cut(s) 250, 747, 963
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 3 cut(s) 10, 289, 494
XagI CCTNNNNNAGG 1 cut(s) 375
XapI RAATTY 1 cut(s) 958
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 2 cut(s) 565, 814
XspI CTAG 4 cut(s) 138, 372, 443, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.