Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

2841999 .. 2845921

Gene Structure 3923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG043200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTGTACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGACGATGGAACCCTGCTCTAGTGTTAAAGACAGGATTGCACATAGTATGATCAAGGATGCGGAGGATAAAGGTCTGATAACTCCGGGAAAGACTGTTCTCATTGAGCCCACAGGTGGCAACACTGGCATTGGATTAGCATCCATAGCAGCTAGCAAGGGTTACAAGCTGAAGCTAGTCATGCCATCATCATATAGTCTTGAAAGAAGAATTGTGCTCCTAGCTTTTGGAGCTGAGGTACACCTCACATATGGGGACAAAGGTGTTCAGGAAGTTCTTGATAAGGCCGAGGAGTTGCTACGTGAAACACCCGATAGTCATATGCTTCAGCAATTTGAAAATCCTGCCAATCCAAAGATTCATTACGAAACCACTGGGCCGGAGATATGGAGAGACTCAGCAGGGAAAGTTGATATGTTGGTTTCAGGGATAGGAACCGGTGGCACAGTAACCGGTATAGGGAAATTTCTTAAAGAGCAAAATCCAGAGATCAAGGTGTATGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATGGTGGTCCACCTGGAAAGCATCTGATCCAAGGAATCGGTTCTGGCTTCATTCCTCAAGTTCTTGATGTTAGCCTGCTAGACGAAGTTATTCCAGTATCCGGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTAAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCTGAAAATGCTGGAAAACTAATAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGCACTATTTGATACCATTAGGCATGAGGCAGAAAACATGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

303

Amino Acids

32.3

Weight (kDa)

5.39

Isoelectric Point (pI)

25.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	2 - 279	2.5e-67	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	850
AccI	GTMKAC	1 cut(s)	860
AciI	CCGC	2 cut(s)	119, 850
AclWI	GGATC	1 cut(s)	610
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	2 cut(s)	248, 368
AfaI	GTAC	2 cut(s)	8, 297
AfiI	CCNNNNNNNGG	4 cut(s)	173, 516, 689, 842
AgeI	ACCGGT	2 cut(s)	494, 509
AgsI	TTSAA	3 cut(s)	260, 395, 589
AjnI	CCWGG	1 cut(s)	601
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	8 cut(s)	38, 55, 209, 226, 232, 281, 290, 718
AluI	AGCT	8 cut(s)	38, 55, 209, 226, 232, 281, 290, 718
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	53, 444, 701
AlwI	GGATC	1 cut(s)	610
AoxI	GGCC	3 cut(s)	342, 434, 797
ApeKI	GCWGC	5 cut(s)	47, 206, 764, 773, 776
ApoI	RAATTY	1 cut(s)	521
AsiGI	ACCGGT	2 cut(s)	494, 509
Asp700I	GAANNNNTTC	2 cut(s)	628, 678
AspS9I	GGNCC	2 cut(s)	434, 596
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	704
AsuNHI	GCTAGC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	5 cut(s)	34, 218, 751, 785, 788
BccI	CCATC	2 cut(s)	58, 250
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	697
BclI	TGATCA	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	3 cut(s)	53, 444, 701
BfaI	CTAG	6 cut(s)	56, 78, 210, 233, 278, 668
BfuI	GTATCC	1 cut(s)	697
BisI	GCNGC	5 cut(s)	48, 207, 765, 774, 777
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	5 cut(s)	49, 208, 766, 775, 778
Bme1390I	CCNGG	2 cut(s)	144, 603
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	2 cut(s)	434, 596
BmiI	GGNNCC	2 cut(s)	69, 493
BmrFI	CCNGG	2 cut(s)	144, 603
BmrI	ACTGGG	2 cut(s)	441, 831
BmsI	GCATC	3 cut(s)	106, 206, 619
BmtI	GCTAGC	1 cut(s)	213
BmuI	ACTGGG	2 cut(s)	441, 831
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	359
BsaBI	GATNNNNATC	2 cut(s)	196, 754
BsaJI	CCNNGG	2 cut(s)	345, 619
BsaWI	WCCGGW	3 cut(s)	494, 509, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 516, 689, 842
Bse118I	RCCGGY	2 cut(s)	494, 509
Bse1I	ACTGG	5 cut(s)	187, 436, 569, 683, 837
Bse8I	GATNNNNATC	2 cut(s)	196, 754
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	345, 619
BseGI	GGATG	2 cut(s)	121, 197
BseJI	GATNNNNATC	2 cut(s)	196, 754
BseLI	CCNNNNNNNGG	4 cut(s)	173, 516, 689, 842
BseMII	CTCAG	2 cut(s)	282, 468
BseNI	ACTGG	5 cut(s)	187, 436, 569, 683, 837
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	5 cut(s)	34, 218, 751, 785, 788
BsgI	GTGCAG	2 cut(s)	600, 849
BshFI	GGCC	3 cut(s)	344, 436, 799
BshTI	ACCGGT	2 cut(s)	494, 509
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	5 cut(s)	143, 437, 495, 510, 690
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	4 cut(s)	173, 516, 689, 842
BsmAI	GTCTC	3 cut(s)	53, 444, 701
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	344, 436, 799
Bsp1286I	GDGCHC	2 cut(s)	168, 276
Bsp143I	GATC	3 cut(s)	108, 546, 615
Bsp1720I	GCTNAGC	1 cut(s)	714
BspACI	CCGC	2 cut(s)	119, 850
BspANI	GGCC	3 cut(s)	344, 436, 799
BspCNI	CTCAG	2 cut(s)	283, 467
BspLI	GGNNCC	2 cut(s)	69, 493
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	610
BsrBI	CCGCTC	1 cut(s)	850
BsrFI	RCCGGY	2 cut(s)	494, 509
BsrI	ACTGG	5 cut(s)	187, 436, 569, 683, 837
BssAI	RCCGGY	2 cut(s)	494, 509
BssECI	CCNNGG	2 cut(s)	345, 619
BssMI	GATC	3 cut(s)	108, 546, 615
BssT1I	CCWWGG	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	2 cut(s)	154, 505
BstBAI	YACGTR	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	211, 665
BstDEI	CTNAG	3 cut(s)	291, 454, 714
BstF5I	GGATG	2 cut(s)	121, 197
BstKTI	GATC	3 cut(s)	111, 549, 618
BstMAI	GTCTC	3 cut(s)	53, 444, 701
BstMBI	GATC	3 cut(s)	108, 546, 615
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 183, 203, 238, 287, 770, 773
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	2 cut(s)	142, 601
BstV1I	GCAGC	5 cut(s)	34, 218, 751, 785, 788
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	3 cut(s)	344, 436, 799
BtsCI	GGATG	2 cut(s)	121, 197
BtsIMutI	CAGTG	2 cut(s)	180, 429
Cac8I	GCNNGC	2 cut(s)	211, 665
Cfr10I	RCCGGY	2 cut(s)	494, 509
Cfr13I	GGNCC	2 cut(s)	434, 596
Csp6I	GTAC	2 cut(s)	7, 296
CspAI	ACCGGT	2 cut(s)	494, 509
CviAII	CATG	3 cut(s)	238, 887, 901
CviQI	GTAC	2 cut(s)	7, 296
DdeI	CTNAG	3 cut(s)	291, 454, 714
DpnI	GATC	3 cut(s)	110, 548, 617
DpnII	GATC	3 cut(s)	108, 546, 615
Eco130I	CCWWGG	1 cut(s)	619
Eco147I	AGGCCT	1 cut(s)	799
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	2 cut(s)	248, 368
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	3 cut(s)	241, 890, 904
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	3 cut(s)	237, 886, 900
FauNDI	CATATG	2 cut(s)	307, 378
FbaI	TGATCA	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	860
Fnu4HI	GCNGC	5 cut(s)	48, 207, 765, 774, 777
FokI	GGATG	2 cut(s)	128, 184
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	5 cut(s)	48, 207, 765, 774, 777
FspBI	CTAG	6 cut(s)	56, 78, 210, 233, 278, 668
GluI	GCNGC	5 cut(s)	48, 207, 765, 774, 777
HaeIII	GGCC	3 cut(s)	344, 436, 799
HapII	CCGG	5 cut(s)	143, 437, 495, 510, 690
Hin1II	CATG	3 cut(s)	241, 890, 904
HinfI	GANTC	5 cut(s)	415, 452, 624, 698, 750
HpaII	CCGG	5 cut(s)	143, 437, 495, 510, 690
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	4 cut(s)	7, 298, 599, 861
Hpy188I	TCNGA	2 cut(s)	135, 615
Hpy188III	TCNNGA	6 cut(s)	257, 326, 335, 542, 586, 653
Hpy8I	GTNNAC	4 cut(s)	7, 298, 599, 861
HpyAV	CCTTC	2 cut(s)	20, 728
HpyCH4III	ACNGT	2 cut(s)	154, 505
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	4 cut(s)	98, 581, 767, 866
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 183, 203, 238, 287, 770, 773
HpyF3I	CTNAG	3 cut(s)	291, 454, 714
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	3 cut(s)	241, 890, 904
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	108, 546, 615
LmnI	GCTCC	2 cut(s)	279, 287
Lsp1109I	GCAGC	5 cut(s)	34, 218, 751, 785, 788
LweI	GCATC	3 cut(s)	106, 206, 619
MaeI	CTAG	6 cut(s)	56, 78, 210, 233, 278, 668
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	2 cut(s)	218, 505
MalI	GATC	3 cut(s)	110, 548, 617
MbiI	CCGCTC	1 cut(s)	850
MboI	GATC	3 cut(s)	108, 546, 615
MboII	GAAGA	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	168, 276
MluCI	AATT	3 cut(s)	267, 389, 521
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	7 cut(s)	115, 286, 311, 340, 654, 688, 883
MroXI	GAANNNNTTC	2 cut(s)	628, 678
MseI	TTAA	3 cut(s)	84, 528, 728
MspI	CCGG	5 cut(s)	143, 437, 495, 510, 690
MspR9I	CCNGG	2 cut(s)	144, 603
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	7 cut(s)	44, 183, 203, 238, 287, 770, 773
NciI	CCSGG	1 cut(s)	144
NdeI	CATATG	2 cut(s)	307, 378
NdeII	GATC	3 cut(s)	108, 546, 615
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	241, 890, 904
NlaIV	GGNNCC	2 cut(s)	69, 493
NmeAIII	GCCGAG	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	799
PdmI	GAANNNNTTC	2 cut(s)	628, 678
PfeI	GAWTC	4 cut(s)	415, 624, 698, 750
PfoI	TCCNGGA	1 cut(s)	142
PinAI	ACCGGT	2 cut(s)	494, 509
PkrI	GCNGC	5 cut(s)	49, 208, 766, 775, 778
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Ppu21I	YACGTR	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	69, 493
PspPI	GGNCC	2 cut(s)	434, 596
RsaI	GTAC	2 cut(s)	8, 297
RsaNI	GTAC	2 cut(s)	7, 296
SaqAI	TTAA	3 cut(s)	84, 528, 728
SatI	GCNGC	5 cut(s)	48, 207, 765, 774, 777
Sau3AI	GATC	3 cut(s)	108, 546, 615
Sau96I	GGNCC	2 cut(s)	434, 596
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	144, 603
SduI	GDGCHC	2 cut(s)	168, 276
SfaNI	GCATC	3 cut(s)	106, 206, 619
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
Sse9I	AATT	3 cut(s)	267, 389, 521
SseBI	AGGCCT	1 cut(s)	799
SsiI	CCGC	2 cut(s)	119, 850
SspMI	CTAG	6 cut(s)	56, 78, 210, 233, 278, 668
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	2 cut(s)	142, 601
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	2 cut(s)	154, 505
TaiI	ACGT	1 cut(s)	361
TasI	AATT	3 cut(s)	267, 389, 521
TfiI	GAWTC	4 cut(s)	415, 624, 698, 750
Tru1I	TTAA	3 cut(s)	84, 528, 728
Tru9I	TTAA	3 cut(s)	84, 528, 728
TscAI	CASTG	2 cut(s)	187, 436
TseI	GCWGC	5 cut(s)	47, 206, 764, 773, 776
TspDTI	ATGAA	2 cut(s)	407, 628
TspRI	CASTG	2 cut(s)	187, 436
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	860
XmnI	GAANNNNTTC	2 cut(s)	628, 678
XspI	CTAG	6 cut(s)	56, 78, 210, 233, 278, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.