Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

3105266 .. 3107322

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGGGCCAATGTGCAATCAAGAAAGATGTCACCGAATTAATTGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGATGATGGGGCCCTGCTCAAGTGTTAAAGACAGGTATAGTTATGATCAAGATGCGGAGGATAAAGGTCTAATAACTCCTGGAAAGACTGTTCTCGTTGAGCCCACAAGTGGTAACACTGGCATTGGATTAGCATTCATAGCAGCTAGCAAGGGTTACAAGCTGAAGCTAGTCATGCCATCAACATATAGTCTTGAAAGAAGAATTGTGCTCCTAGCCTTTGGAGCTGAGGTATACCTCACTGATTCGGCCAAAGGTATTAAGGGAGTTCTTGATAAGGCCGAGGAGTTGCTTCGTGACACGCCTGATAGTCATATGCTTCAGCAACTTGAAAATCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCAGAGATCTGGAGAGACTCAGCAAGGAAAGTTGATATCTTGGTTTCAGGGATAGGAACCGGTGGCACAGTAACCGGTATAGGGAAATTTCTTAAAGAGCAAAATCCAGAGATCAAGGTTTGCGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATGGAGGTCCACCTGGAAGGCATCTGATCCAAGGAATCGGTGTTGGCTTCATACCTCAAGTTCTCGATGTTAGCCTGCTAGACGAAGTTATTCCAGTATCCAGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTGAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

320

Amino Acids

34.26

Weight (kDa)

5.24

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 296	6.8e-66	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	901
AccI	GTMKAC	3 cut(s)	63, 348, 911
AciI	CCGC	3 cut(s)	170, 609, 901
AclWI	GGATC	1 cut(s)	661
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	2 cut(s)	299, 419
AfiI	CCNNNNNNNGG	3 cut(s)	224, 567, 893
AgeI	ACCGGT	2 cut(s)	545, 560
AgsI	TTSAA	4 cut(s)	311, 446, 640, 781
AjnI	CCWGG	2 cut(s)	193, 652
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	7 cut(s)	95, 112, 260, 277, 283, 341, 769
AluI	AGCT	7 cut(s)	95, 112, 260, 277, 283, 341, 769
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	495, 752
AlwI	GGATC	1 cut(s)	661
AoxI	GGCC	6 cut(s)	7, 125, 363, 393, 484, 848
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	5 cut(s)	104, 257, 815, 824, 827
ApoI	RAATTY	1 cut(s)	572
AseI	ATTAAT	1 cut(s)	41
AsiGI	ACCGGT	2 cut(s)	545, 560
Asp700I	GAANNNNTTC	1 cut(s)	729
AspS9I	GGNCC	5 cut(s)	7, 125, 126, 485, 647
AsuHPI	GGTGA	1 cut(s)	25
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	2 cut(s)	129, 219
Bbv12I	GWGCWC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	5 cut(s)	91, 269, 802, 836, 839
BccI	CCATC	2 cut(s)	115, 301
BciT130I	CCWGG	2 cut(s)	195, 654
BciVI	GTATCC	1 cut(s)	748
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	495, 752
BfaI	CTAG	5 cut(s)	113, 261, 284, 329, 719
BfuI	GTATCC	1 cut(s)	748
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	5 cut(s)	105, 258, 816, 825, 828
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	5 cut(s)	106, 259, 817, 826, 829
Bme1390I	CCNGG	2 cut(s)	195, 654
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	5 cut(s)	7, 125, 126, 485, 647
BmiI	GGNNCC	3 cut(s)	126, 127, 544
BmrFI	CCNGG	2 cut(s)	195, 654
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	2 cut(s)	157, 670
BmtI	GCTAGC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	882
BpmI	CTGGAG	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	2 cut(s)	118, 681
BsaBI	GATNNNNATC	1 cut(s)	805
BsaJI	CCNNGG	2 cut(s)	396, 670
BsaWI	WCCGGW	2 cut(s)	545, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 567, 893
Bse118I	RCCGGY	2 cut(s)	545, 560
Bse1I	ACTGG	6 cut(s)	238, 487, 620, 734, 741, 888
Bse8I	GATNNNNATC	1 cut(s)	805
BseBI	CCWGG	2 cut(s)	195, 654
BseDI	CCNNGG	2 cut(s)	396, 670
BseJI	GATNNNNATC	1 cut(s)	805
BseLI	CCNNNNNNNGG	3 cut(s)	224, 567, 893
BseMII	CTCAG	2 cut(s)	333, 519
BseNI	ACTGG	6 cut(s)	238, 487, 620, 734, 741, 888
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	5 cut(s)	91, 269, 802, 836, 839
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	6 cut(s)	9, 127, 365, 395, 486, 850
BshTI	ACCGGT	2 cut(s)	545, 560
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	3 cut(s)	546, 561, 861
BslI	CCNNNNNNNGG	3 cut(s)	224, 567, 893
BsmAI	GTCTC	2 cut(s)	495, 752
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	6 cut(s)	9, 127, 365, 395, 486, 850
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	3 cut(s)	129, 219, 327
Bsp143I	GATC	4 cut(s)	160, 492, 597, 666
Bsp1720I	GCTNAGC	1 cut(s)	765
BspACI	CCGC	3 cut(s)	170, 609, 901
BspANI	GGCC	6 cut(s)	9, 127, 365, 395, 486, 850
BspCNI	CTCAG	2 cut(s)	334, 518
BspLI	GGNNCC	3 cut(s)	126, 127, 544
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	901
BsrFI	RCCGGY	2 cut(s)	545, 560
BsrI	ACTGG	6 cut(s)	238, 487, 620, 734, 741, 888
BssAI	RCCGGY	2 cut(s)	545, 560
BssECI	CCNNGG	2 cut(s)	396, 670
BssMI	GATC	4 cut(s)	160, 492, 597, 666
BssNAI	GTATAC	2 cut(s)	64, 349
BssT1I	CCWWGG	1 cut(s)	670
Bst1107I	GTATAC	2 cut(s)	64, 349
Bst2UI	CCWGG	2 cut(s)	195, 654
Bst4CI	ACNGT	2 cut(s)	205, 556
BstC8I	GCNNGC	2 cut(s)	262, 716
BstDEI	CTNAG	3 cut(s)	342, 505, 765
BstKTI	GATC	4 cut(s)	163, 495, 600, 669
BstMAI	GTCTC	2 cut(s)	495, 752
BstMBI	GATC	4 cut(s)	160, 492, 597, 666
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 254, 289, 338, 821, 824
BstNI	CCWGG	2 cut(s)	195, 654
BstSCI	CCNGG	2 cut(s)	193, 652
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	5 cut(s)	91, 269, 802, 836, 839
BstX2I	RGATCY	1 cut(s)	492
BstXI	CCANNNNNNTGG	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	492
BstZ17I	GTATAC	2 cut(s)	64, 349
BsuI	GTATCC	1 cut(s)	748
BsuRI	GGCC	6 cut(s)	9, 127, 365, 395, 486, 850
BtsIMutI	CAGTG	4 cut(s)	231, 354, 480, 748
Cac8I	GCNNGC	2 cut(s)	262, 716
Cfr10I	RCCGGY	2 cut(s)	545, 560
Cfr13I	GGNCC	5 cut(s)	7, 125, 126, 485, 647
CspAI	ACCGGT	2 cut(s)	545, 560
CviAII	CATG	3 cut(s)	289, 938, 952
DdeI	CTNAG	3 cut(s)	342, 505, 765
DpnI	GATC	4 cut(s)	162, 494, 599, 668
DpnII	GATC	4 cut(s)	160, 492, 597, 666
EaeI	YGGCCR	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	670
Eco24I	GRGCYC	2 cut(s)	129, 219
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	299, 419
EcoO109I	RGGNCCY	2 cut(s)	125, 126
EcoRII	CCWGG	2 cut(s)	193, 652
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	670
EcoT38I	GRGCYC	2 cut(s)	129, 219
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	3 cut(s)	292, 941, 955
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FatI	CATG	3 cut(s)	288, 937, 951
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	160
FblI	GTMKAC	3 cut(s)	63, 348, 911
Fnu4HI	GCNGC	5 cut(s)	105, 258, 816, 825, 828
FriOI	GRGCYC	2 cut(s)	129, 219
Fsp4HI	GCNGC	5 cut(s)	105, 258, 816, 825, 828
FspBI	CTAG	5 cut(s)	113, 261, 284, 329, 719
GluI	GCNGC	5 cut(s)	105, 258, 816, 825, 828
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	6 cut(s)	9, 127, 365, 395, 486, 850
HapII	CCGG	3 cut(s)	546, 561, 861
Hin1II	CATG	3 cut(s)	292, 941, 955
HinfI	GANTC	6 cut(s)	359, 466, 503, 675, 749, 801
HpaII	CCGG	3 cut(s)	546, 561, 861
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	4 cut(s)	64, 349, 650, 912
Hpy188I	TCNGA	1 cut(s)	666
Hpy188III	TCNNGA	9 cut(s)	22, 164, 308, 386, 410, 496, 593, 637, 704
Hpy8I	GTNNAC	4 cut(s)	64, 349, 650, 912
HpyAV	CCTTC	3 cut(s)	77, 651, 779
HpyCH4III	ACNGT	2 cut(s)	205, 556
HpyCH4V	TGCA	3 cut(s)	17, 632, 818
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 254, 289, 338, 821, 824
HpyF3I	CTNAG	3 cut(s)	342, 505, 765
Hsp92II	CATG	3 cut(s)	292, 941, 955
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 492, 597, 666
LmnI	GCTCC	2 cut(s)	330, 338
Lsp1109I	GCAGC	5 cut(s)	91, 269, 802, 836, 839
LweI	GCATC	2 cut(s)	157, 670
MaeI	CTAG	5 cut(s)	113, 261, 284, 329, 719
MaeIII	GTNAC	5 cut(s)	31, 227, 269, 410, 556
MalI	GATC	4 cut(s)	162, 494, 599, 668
MbiI	CCGCTC	1 cut(s)	901
MboI	GATC	4 cut(s)	160, 492, 597, 666
MboII	GAAGA	1 cut(s)	327
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	3 cut(s)	129, 219, 327
MluCI	AATT	4 cut(s)	38, 42, 318, 572
MlyI	GAGTC	1 cut(s)	497
MnlI	CCTC	8 cut(s)	166, 337, 362, 391, 638, 705, 739, 934
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	4 cut(s)	41, 141, 375, 579
MspI	CCGG	3 cut(s)	546, 561, 861
MspR9I	CCNGG	2 cut(s)	195, 654
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	2 cut(s)	195, 654
MwoI	GCNNNNNNNGC	6 cut(s)	101, 254, 289, 338, 821, 824
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	4 cut(s)	160, 492, 597, 666
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	292, 941, 955
NlaIV	GGNNCC	3 cut(s)	126, 127, 544
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	2 cut(s)	31, 410
PctI	GAATGC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	5 cut(s)	359, 466, 675, 749, 801
PfoI	TCCNGGA	1 cut(s)	193
PinAI	ACCGGT	2 cut(s)	545, 560
PkrI	GCNGC	5 cut(s)	106, 259, 817, 826, 829
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	193, 652
PspGI	CCWGG	2 cut(s)	193, 652
PspN4I	GGNNCC	3 cut(s)	126, 127, 544
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	5 cut(s)	7, 125, 126, 485, 647
PsuI	RGATCY	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	41, 141, 375, 579
SatI	GCNGC	5 cut(s)	105, 258, 816, 825, 828
Sau3AI	GATC	4 cut(s)	160, 492, 597, 666
Sau96I	GGNCC	5 cut(s)	7, 125, 126, 485, 647
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	2 cut(s)	195, 654
SduI	GDGCHC	3 cut(s)	129, 219, 327
SfaNI	GCATC	2 cut(s)	157, 670
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	133, 696
SmoI	CTYRAG	2 cut(s)	133, 696
Sse9I	AATT	4 cut(s)	38, 42, 318, 572
SsiI	CCGC	3 cut(s)	170, 609, 901
SspMI	CTAG	5 cut(s)	113, 261, 284, 329, 719
StyD4I	CCNGG	2 cut(s)	193, 652
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	2 cut(s)	205, 556
TaqI	TCGA	1 cut(s)	705
TasI	AATT	4 cut(s)	38, 42, 318, 572
TfiI	GAWTC	5 cut(s)	359, 466, 675, 749, 801
Tru1I	TTAA	4 cut(s)	41, 141, 375, 579
Tru9I	TTAA	4 cut(s)	41, 141, 375, 579
TscAI	CASTG	4 cut(s)	238, 361, 487, 748
TseFI	GTSAC	2 cut(s)	31, 410
TseI	GCWGC	5 cut(s)	104, 257, 815, 824, 827
Tsp45I	GTSAC	2 cut(s)	31, 410
TspDTI	ATGAA	4 cut(s)	241, 458, 489, 679
TspRI	CASTG	4 cut(s)	238, 361, 487, 748
VpaK11BI	GGWCC	1 cut(s)	647
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	572
XmiI	GTMKAC	3 cut(s)	63, 348, 911
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	5 cut(s)	113, 261, 284, 329, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.