Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

47082548 .. 47085983

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATCAAGGATGCAGAGGATAAAGGTCTAATTACACCAGGGAAGACTGTTCTTATTGAGGTTACAAGTGGTAACACTGGCATTGGATTGGCATTCATTGCCGCAATCAAGGGTTACAAGCTCAAGCTAAGCATGCCAGCTACAATGAGTCTTGAAAGAAGAATTGTGCTCCGAGCTTTTGGAGCTGAGGTCTTCATCGCAGATCCTGCCAGGGGCTTTGAGGGAGCTTTTGCCAAGGCAGACGAGCTGCTAAGTAACACACCTAATAGCTTTATACTTCAACAATCGGAAAACCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACTCAGGAGGGAAAGTTGATGTTTTTGTTTCAGCAATAGGGACTGGAGGTACTATAACCGGTGCAGGAAGTTTCCTTAAAGAGCAAAATCCAGATATTAAGGTGTATGGTGTAGAACCAGCTGAAAGTGCAGTATTGAATGGTGGCAAACCTGGGATGCATCTTATCCAAGGAATTGGTGCTGGTTTCATACCTCAAGTTCTGGATGTTAGCTTGCTGGATGAAGTTATTCAAGTATCCAGTGAGGAAGCAATTGAAACTGCTAAGCTGCTTGCGCTAAAAGAAGGTCTTTTGGTGGGGATTTCATCAGGTGCTGCTGCAGCAGCAGCAATAAAGTTGGCAAAGAAGCAAGAAAATGCTGGAAAATTAATAGTTGTTGTGTTTGCCAGTTCTGGAGAGCGTTATCTGTCTTCTCCACTCTTTGATACCATTAGGCACGAGGCAGAAAATATGAAGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

270

Amino Acids

28.34

Weight (kDa)

5.29

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	7 - 243	2.5e-60	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	404
AgsI	TTSAA	6 cut(s)	155, 281, 484, 578, 602, 806
AjnI	CCWGG	3 cut(s)	37, 209, 496
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	2 cut(s)	206, 659
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	7 cut(s)	247, 613, 659, 662, 665, 668, 671
AseI	ATTAAT	1 cut(s)	713
AsiGI	ACCGGT	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	1 cut(s)	332
BauI	CACGAG	1 cut(s)	782
BbsI	GAAGAC	3 cut(s)	50, 184, 747
Bbv12I	GWGCWC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	7 cut(s)	234, 600, 646, 649, 677, 680, 683
BciT130I	CCWGG	3 cut(s)	39, 211, 498
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	663
BfuI	GTATCC	1 cut(s)	592
BisI	GCNGC	8 cut(s)	102, 248, 614, 660, 663, 666, 669, 672
BlpI	GCTNAGC	2 cut(s)	128, 609
BlsI	GCNGC	8 cut(s)	103, 249, 615, 661, 664, 667, 670, 673
Bme1390I	CCNGG	4 cut(s)	39, 211, 332, 498
BmgT120I	GGNCC	1 cut(s)	329
BmrFI	CCNGG	4 cut(s)	39, 211, 332, 498
BmsI	GCATC	2 cut(s)	492, 514
BpiI	GAAGAC	3 cut(s)	50, 184, 747
BpmI	CTGGAG	2 cut(s)	411, 759
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu1102I	GCTNAGC	2 cut(s)	128, 609
BpuEI	CTTGAG	2 cut(s)	107, 525
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	5 cut(s)	38, 210, 234, 497, 514
BsaWI	WCCGGW	1 cut(s)	404
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	5 cut(s)	82, 331, 394, 585, 732
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	3 cut(s)	39, 211, 498
BseDI	CCNNGG	5 cut(s)	38, 210, 234, 497, 514
BseGI	GGATG	4 cut(s)	16, 507, 556, 571
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	177, 363
BseNI	ACTGG	5 cut(s)	82, 331, 394, 585, 732
BseXI	GCAGC	7 cut(s)	234, 600, 646, 649, 677, 680, 683
BsgI	GTGCAG	2 cut(s)	429, 495
BshFI	GGCC	1 cut(s)	330
BshTI	ACCGGT	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	332, 405
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	3, 202
Bsp1720I	GCTNAGC	2 cut(s)	128, 609
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	178, 362
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	5 cut(s)	82, 331, 394, 585, 732
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	5 cut(s)	38, 210, 234, 497, 514
BssMI	GATC	2 cut(s)	3, 202
BssSI	CACGAG	1 cut(s)	782
BssT1I	CCWWGG	2 cut(s)	234, 514
Bst2BI	CACGAG	1 cut(s)	782
Bst2UI	CCWGG	3 cut(s)	39, 211, 498
Bst4CI	ACNGT	1 cut(s)	49
BstAPI	GCANNNNNTGC	2 cut(s)	98, 206
BstC8I	GCNNGC	4 cut(s)	134, 138, 560, 618
BstDEI	CTNAG	5 cut(s)	128, 186, 251, 349, 609
BstF5I	GGATG	4 cut(s)	16, 507, 556, 571
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	2 cut(s)	6, 205
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	2 cut(s)	3, 202
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 133, 182, 206, 473, 619, 665, 668, 671
BstNI	CCWGG	3 cut(s)	39, 211, 498
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	4 cut(s)	37, 209, 330, 496
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	7 cut(s)	234, 600, 646, 649, 677, 680, 683
BstV2I	GAAGAC	3 cut(s)	50, 184, 747
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	4 cut(s)	16, 507, 556, 571
BtsIMutI	CAGTG	3 cut(s)	75, 324, 592
Cac8I	GCNNGC	4 cut(s)	134, 138, 560, 618
CaiI	CAGNNNCTG	2 cut(s)	206, 659
CfoI	GCGC	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	404
CviAII	CATG	1 cut(s)	133
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	5 cut(s)	128, 186, 251, 349, 609
DpnI	GATC	2 cut(s)	5, 204
DpnII	GATC	2 cut(s)	3, 202
Eco130I	CCWWGG	2 cut(s)	234, 514
EcoRII	CCWGG	3 cut(s)	37, 209, 496
EcoT14I	CCWWGG	2 cut(s)	234, 514
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	234, 514
FaeI	CATG	1 cut(s)	136
FaiI	YATR	8 cut(s)	134, 275, 318, 340, 401, 453, 536, 797
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	8 cut(s)	102, 248, 614, 660, 663, 666, 669, 672
FokI	GGATG	4 cut(s)	23, 514, 563, 578
Fsp4HI	GCNGC	8 cut(s)	102, 248, 614, 660, 663, 666, 669, 672
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	8 cut(s)	102, 248, 614, 660, 663, 666, 669, 672
GsuI	CTGGAG	2 cut(s)	411, 759
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	332, 405
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	3 cut(s)	148, 310, 347
HpaII	CCGG	2 cut(s)	332, 405
Hpy188I	TCNGA	2 cut(s)	173, 289
Hpy188III	TCNNGA	5 cut(s)	152, 351, 437, 548, 738
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	5 cut(s)	14, 410, 476, 505, 665
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 133, 182, 206, 473, 619, 665, 668, 671
HpyF3I	CTNAG	5 cut(s)	128, 186, 251, 349, 609
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 202
LmnI	GCTCC	3 cut(s)	174, 182, 224
Lsp1109I	GCAGC	7 cut(s)	234, 600, 646, 649, 677, 680, 683
LweI	GCATC	2 cut(s)	492, 514
MaeIII	GTNAC	4 cut(s)	61, 71, 113, 254
MalI	GATC	2 cut(s)	5, 204
MboI	GATC	2 cut(s)	3, 202
MboII	GAAGA	4 cut(s)	55, 171, 184, 747
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	5 cut(s)	30, 162, 519, 597, 710
MlyI	GAGTC	2 cut(s)	157, 341
MnlI	CCTC	9 cut(s)	10, 52, 181, 214, 347, 386, 549, 583, 778
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	3 cut(s)	423, 444, 713
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	2 cut(s)	332, 405
MspR9I	CCNGG	4 cut(s)	39, 211, 332, 498
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	3 cut(s)	39, 211, 498
MwoI	GCNNNNNNNGC	9 cut(s)	98, 133, 182, 206, 473, 619, 665, 668, 671
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	2 cut(s)	3, 202
NlaIII	CATG	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	404
PkrI	GCNGC	8 cut(s)	103, 249, 615, 661, 664, 667, 670, 673
PleI	GAGTC	2 cut(s)	156, 341
PpsI	GAGTC	2 cut(s)	156, 341
PshBI	ATTAAT	1 cut(s)	713
Psp6I	CCWGG	3 cut(s)	37, 209, 496
PspGI	CCWGG	3 cut(s)	37, 209, 496
PspPI	GGNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	2 cut(s)	206, 659
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	423, 444, 713
SatI	GCNGC	8 cut(s)	102, 248, 614, 660, 663, 666, 669, 672
Sau3AI	GATC	2 cut(s)	3, 202
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	2 cut(s)	157, 341
ScrFI	CCNGG	4 cut(s)	39, 211, 332, 498
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	2 cut(s)	492, 514
SfcI	CTRYAG	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	122, 540
SmoI	CTYRAG	2 cut(s)	122, 540
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	5 cut(s)	30, 162, 519, 597, 710
SsiI	CCGC	1 cut(s)	102
StyD4I	CCNGG	4 cut(s)	37, 209, 330, 496
StyI	CCWWGG	2 cut(s)	234, 514
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	5 cut(s)	30, 162, 519, 597, 710
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	3 cut(s)	423, 444, 713
Tru9I	TTAA	3 cut(s)	423, 444, 713
TscAI	CASTG	3 cut(s)	82, 331, 592
TseI	GCWGC	7 cut(s)	247, 613, 659, 662, 665, 668, 671
TspDTI	ATGAA	7 cut(s)	85, 184, 302, 333, 523, 582, 639
TspRI	CASTG	3 cut(s)	82, 331, 592
VspI	ATTAAT	1 cut(s)	713
XceI	RCATGY	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	573
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.