Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

49718958 .. 49722904

Gene Structure 3947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGGGCCAATGTGCAATCAAGAAAGATGTCACTGAATTAATTGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGATGATGGGACCCTGCTCTAGTGTTAAAGACAGGATTGGACATAGTATGATCAAGGATGCGGAGGATAAAGGTCTAATAACTCCTGGAAAGACTGTTCTCGTTGAGCCCACAAGTGGTAACACTGGCATTGGATTAGCATTCATAGCAGCTAGCAAGGGTTACAAGCTGAAGCTAGTCATGCCATCATCATATAGTCTTGAAAGAAGAATTGTGCTCCTAGCTTTTGGAGCTGAGGTATACCTCACAGATAAGAACAAAGGTATGAAGGGAATACTTGATAAGGCCGAGGAGTTGCTACGTGACACGCCTGATAGTCATATGCTTCAGCAACTTGAAAATCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACTCAGCAGGGAAAGTTGATATCTTGGTTTCAGCAATAGGAACTGGTGGCACAGTAACCGGTATAGGGAAATTTCTTAAAGAGCAAAATCCAGAGATCAAGGTATCCAGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTGAAAGAAGGTCTTTTGGTGGGAATCTCATCTGGTGCTGCAACAGCAGCCGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTTATTGTAAAGTACAGAACTGGATTTATAGGCGACTACAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

264

Amino Acids

28.29

Weight (kDa)

8.59

Isoelectric Point (pI)

19.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 204	4e-48	Pyridoxal-phosphate dependent enzyme
PALP	PF00291	203 - 252	4e-07	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	793
AccI	GTMKAC	2 cut(s)	63, 354
AciI	CCGC	2 cut(s)	176, 702
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	2 cut(s)	305, 425
AfaI	GTAC	1 cut(s)	761
AfiI	CCNNNNNNNGG	2 cut(s)	230, 573
AgeI	ACCGGT	1 cut(s)	566
AgsI	TTSAA	3 cut(s)	317, 452, 655
AjnI	CCWGG	1 cut(s)	199
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	8 cut(s)	95, 112, 266, 283, 289, 338, 347, 643
AluI	AGCT	8 cut(s)	95, 112, 266, 283, 289, 338, 347, 643
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	501, 626
AoxI	GGCC	4 cut(s)	7, 399, 490, 722
ApeKI	GCWGC	4 cut(s)	104, 263, 689, 698
ApoI	RAATTY	1 cut(s)	578
AseI	ATTAAT	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	566
AspS9I	GGNCC	3 cut(s)	7, 125, 491
AsuC2I	CCSGG	1 cut(s)	494
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	91, 275, 676, 710
BccI	CCATC	2 cut(s)	115, 307
BciT130I	CCWGG	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	622
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	501, 626
BfaI	CTAG	5 cut(s)	113, 135, 267, 290, 335
BfmI	CTRYAG	1 cut(s)	784
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	5 cut(s)	105, 264, 690, 699, 702
BlpI	GCTNAGC	1 cut(s)	639
BlsI	GCNGC	5 cut(s)	106, 265, 691, 700, 703
Bme1390I	CCNGG	2 cut(s)	201, 494
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	3 cut(s)	7, 125, 491
BmiI	GGNNCC	2 cut(s)	126, 127
BmrFI	CCNGG	2 cut(s)	201, 494
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	639
BpuMI	CCSGG	1 cut(s)	494
BsaAI	YACGTR	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 573
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	5 cut(s)	244, 493, 556, 615, 772
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	230, 573
BseMII	CTCAG	2 cut(s)	339, 525
BseNI	ACTGG	5 cut(s)	244, 493, 556, 615, 772
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	4 cut(s)	91, 275, 676, 710
BshFI	GGCC	4 cut(s)	9, 401, 492, 724
BshTI	ACCGGT	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	494, 567, 735
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	230, 573
BsmAI	GTCTC	2 cut(s)	501, 626
BsmFI	GGGAC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	4 cut(s)	9, 401, 492, 724
Bsp1286I	GDGCHC	2 cut(s)	225, 333
Bsp143I	GATC	2 cut(s)	165, 603
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	2 cut(s)	176, 702
BspANI	GGCC	4 cut(s)	9, 401, 492, 724
BspCNI	CTCAG	2 cut(s)	340, 524
BspLI	GGNNCC	2 cut(s)	126, 127
BspOI	GCTAGC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	566
BsrI	ACTGG	5 cut(s)	244, 493, 556, 615, 772
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	2 cut(s)	165, 603
BssNAI	GTATAC	2 cut(s)	64, 355
Bst1107I	GTATAC	2 cut(s)	64, 355
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	211, 562
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	3 cut(s)	348, 511, 639
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	168, 606
BstMAI	GTCTC	2 cut(s)	501, 626
BstMBI	GATC	2 cut(s)	165, 603
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 260, 295, 344, 695, 698
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	199, 492
BstSFI	CTRYAG	1 cut(s)	784
BstV1I	GCAGC	4 cut(s)	91, 275, 676, 710
BstZ17I	GTATAC	2 cut(s)	64, 355
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	4 cut(s)	9, 401, 492, 724
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	4 cut(s)	33, 237, 486, 622
Cac8I	GCNNGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	3 cut(s)	7, 125, 491
Csp6I	GTAC	1 cut(s)	760
CspAI	ACCGGT	1 cut(s)	566
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	1 cut(s)	760
DdeI	CTNAG	3 cut(s)	348, 511, 639
DpnI	GATC	2 cut(s)	167, 605
DpnII	GATC	2 cut(s)	165, 603
Eco24I	GRGCYC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	305, 425
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	1 cut(s)	298
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	1 cut(s)	294
FauNDI	CATATG	1 cut(s)	435
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	2 cut(s)	63, 354
Fnu4HI	GCNGC	5 cut(s)	105, 264, 690, 699, 702
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	5 cut(s)	105, 264, 690, 699, 702
FspBI	CTAG	5 cut(s)	113, 135, 267, 290, 335
GluI	GCNGC	5 cut(s)	105, 264, 690, 699, 702
HaeIII	GGCC	4 cut(s)	9, 401, 492, 724
HapII	CCGG	3 cut(s)	494, 567, 735
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	4 cut(s)	472, 509, 623, 675
HpaII	CCGG	3 cut(s)	494, 567, 735
Hpy166II	GTNNAC	2 cut(s)	64, 355
Hpy188III	TCNNGA	3 cut(s)	22, 314, 599
Hpy8I	GTNNAC	2 cut(s)	64, 355
HpyAV	CCTTC	3 cut(s)	77, 376, 653
HpyCH4III	ACNGT	2 cut(s)	211, 562
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	2 cut(s)	17, 692
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 260, 295, 344, 695, 698
HpyF3I	CTNAG	3 cut(s)	348, 511, 639
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	1 cut(s)	298
KflI	GGGWCCC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	165, 603
LmnI	GCTCC	2 cut(s)	336, 344
Lsp1109I	GCAGC	4 cut(s)	91, 275, 676, 710
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	5 cut(s)	113, 135, 267, 290, 335
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	5 cut(s)	31, 233, 275, 416, 562
MalI	GATC	2 cut(s)	167, 605
MboI	GATC	2 cut(s)	165, 603
MboII	GAAGA	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	225, 333
MluCI	AATT	4 cut(s)	38, 42, 324, 578
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	5 cut(s)	172, 343, 368, 397, 613
MseI	TTAA	3 cut(s)	41, 141, 585
MspI	CCGG	3 cut(s)	494, 567, 735
MspR9I	CCNGG	2 cut(s)	201, 494
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	6 cut(s)	101, 260, 295, 344, 695, 698
NciI	CCSGG	1 cut(s)	494
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	2 cut(s)	165, 603
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	126, 127
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	2 cut(s)	31, 416
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	472, 623, 675
PfoI	TCCNGGA	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	106, 265, 691, 700, 703
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	416
PpuMI	RGGWCCY	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	793
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	126, 127
PspPI	GGNCC	3 cut(s)	7, 125, 491
PspPPI	RGGWCCY	1 cut(s)	125
RsaI	GTAC	1 cut(s)	761
RsaNI	GTAC	1 cut(s)	760
SaqAI	TTAA	3 cut(s)	41, 141, 585
SatI	GCNGC	5 cut(s)	105, 264, 690, 699, 702
Sau3AI	GATC	2 cut(s)	165, 603
Sau96I	GGNCC	3 cut(s)	7, 125, 491
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	201, 494
SduI	GDGCHC	2 cut(s)	225, 333
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	784
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	4 cut(s)	38, 42, 324, 578
SsiI	CCGC	2 cut(s)	176, 702
SspMI	CTAG	5 cut(s)	113, 135, 267, 290, 335
StyD4I	CCNGG	2 cut(s)	199, 492
TaaI	ACNGT	2 cut(s)	211, 562
TaiI	ACGT	1 cut(s)	418
TasI	AATT	4 cut(s)	38, 42, 324, 578
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	3 cut(s)	472, 623, 675
Tru1I	TTAA	3 cut(s)	41, 141, 585
Tru9I	TTAA	3 cut(s)	41, 141, 585
TscAI	CASTG	4 cut(s)	40, 244, 493, 622
TseFI	GTSAC	2 cut(s)	31, 416
TseI	GCWGC	4 cut(s)	104, 263, 689, 698
Tsp45I	GTSAC	2 cut(s)	31, 416
TspDTI	ATGAA	4 cut(s)	247, 395, 464, 495
TspRI	CASTG	4 cut(s)	40, 244, 493, 622
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	63, 354
XspI	CTAG	5 cut(s)	113, 135, 267, 290, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.