Rw3G003180

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
2771725 .. 2774148
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003180.1

Sequence Viewer

Length: 981 bp
ATGGAGGACTCCTGCGCAATCAAGAACAATGTCACTGAATTAATCGGAAATACCCCAATGGTATATCTCAACAACGTCGTGGACGGTTGTGTAGCCAGAATTGCTGCCAAGCTAGAGATAATGGAACCTTGCTCTAGTGTAAAAGACAGGATCGCGTATAGCATGATCAAGGATGCAGAGGATAAGGGTCTAATTACGCCAGGGAAGACTGTTCTTATTGAGCCTACAAGTGGCAACACTGGCATTGGATTGGCATTCATTGCCGCAACCAAGGGCTACAAGCTTAAGCTAAGCATGCCATCTATAGTGAGTCTTGAAAGAAGAATTGTGCTCCGAGCTTTTGGAGCTGAGGTCTTCATCACAGATCCTGCTAAGGGATTTAAGGGAGTTCTTGCTAAGGCAGATGAGCTGCTAAGCAACACACCTAATAGCTTTATGCTTCAACAGTTTGAAAACCCTGCCAATCCAGAGGTTCATTATGAAACCACTGGCCCAGAGATATGGAGAGACTCGGGAGGGAAAGTTGATGCCTTGGTTTCAGGGATAGGGACTGGGGGTACTGTAACCGGTGCAGGGAGTTTCCTCAAAGAGCAAAATCCAGAATCAAGGTTGACTTTTGTGTATGGTGTAGAACCAGCTGAAAGTGCAATATTGAATGGCGGCAAACCTGGGATGCATCTGATCCAAGGAATTGGTGCTGGTTTCATACCTCAAGTTCTGGATGTTAGCTTGCTGGATGAAGTTATTCAAGTATCCAGTGAGGAAGCAATTGAAACTGCTAAGCTGCTTGCACTAAAAGAAGGTCTTTTGGTGGGAATTTCATCTGGTGCTGCTGCAGCAGCAGCAATAAAGTTGGCAAAGAAGCAAGAAAATGCTGGAAAACTGATAGTTGTTGTGTTCGCCAGTTCTGGAGAGCGCTACCTGTCTTCGCCACTCTTCGATACCATTAGGCATGAGGCAGAAAATATGAAGTTTGAATGA

Protein Analysis

326

Amino Acids

34.56

Weight (kDa)

5.17

Isoelectric Point (pI)

26.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 11 - 300 6.9e-71 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 16
AccII CGCG 1 cut(s) 155
AciI CCGC 2 cut(s) 264, 660
AclWI GGATC 3 cut(s) 158, 359, 676
AcsI RAATTY 1 cut(s) 816
AfaI GTAC 1 cut(s) 559
AfeI AGCGCT 1 cut(s) 917
AfiI CCNNNNNNNGG 3 cut(s) 230, 374, 573
AflII CTTAAG 1 cut(s) 284
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 7 cut(s) 317, 443, 452, 655, 749, 773, 977
AjnI CCWGG 2 cut(s) 199, 667
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 3 cut(s) 158, 359, 676
AlwNI CAGNNNCTG 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 511
Aor51HI AGCGCT 1 cut(s) 917
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 8 cut(s) 104, 409, 784, 830, 833, 836, 839, 842
ApoI RAATTY 1 cut(s) 816
AseI ATTAAT 1 cut(s) 41
AsiGI ACCGGT 1 cut(s) 566
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 2 cut(s) 17, 918
AspS9I GGNCC 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 511
BbsI GAAGAC 3 cut(s) 212, 346, 918
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 8 cut(s) 91, 396, 771, 817, 820, 848, 851, 854
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 2 cut(s) 201, 669
BciVI GTATCC 1 cut(s) 763
BclI TGATCA 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 2 cut(s) 113, 135
BfmI CTRYAG 2 cut(s) 303, 834
BfoI RGCGCY 1 cut(s) 919
BfrI CTTAAG 1 cut(s) 284
BfuI GTATCC 1 cut(s) 763
BlpI GCTNAGC 3 cut(s) 290, 413, 780
Bme1390I CCNGG 2 cut(s) 201, 669
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 2 cut(s) 201, 669
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 4 cut(s) 163, 517, 663, 685
BmuI ACTGGG 1 cut(s) 561
BpiI GAAGAC 3 cut(s) 212, 346, 918
BpmI CTGGAG 1 cut(s) 930
Bpu10I CCTNAGC 3 cut(s) 348, 372, 396
Bpu1102I GCTNAGC 3 cut(s) 290, 413, 780
BpuEI CTTGAG 1 cut(s) 696
BsaJI CCNNGG 5 cut(s) 200, 270, 531, 668, 685
BsaWI WCCGGW 1 cut(s) 566
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 507, 537
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 374, 573
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 5 cut(s) 244, 493, 556, 756, 903
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 2 cut(s) 201, 669
BseDI CCNNGG 5 cut(s) 200, 270, 531, 668, 685
BseGI GGATG 4 cut(s) 178, 678, 727, 742
BseLI CCNNNNNNNGG 3 cut(s) 230, 374, 573
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 5 cut(s) 244, 493, 556, 756, 903
BseXI GCAGC 8 cut(s) 91, 396, 771, 817, 820, 848, 851, 854
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 492
BshTI ACCGGT 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 1 cut(s) 567
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 3 cut(s) 230, 374, 573
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 562
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 150, 165, 364, 681
Bsp1720I GCTNAGC 3 cut(s) 290, 413, 780
BspACI CCGC 2 cut(s) 264, 660
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 1 cut(s) 340
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 838
BspPI GGATC 3 cut(s) 158, 359, 676
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 5 cut(s) 244, 493, 556, 756, 903
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 5 cut(s) 200, 270, 531, 668, 685
BssMI GATC 4 cut(s) 150, 165, 364, 681
BssT1I CCWWGG 3 cut(s) 270, 531, 685
Bst2UI CCWGG 2 cut(s) 201, 669
Bst4CI ACNGT 4 cut(s) 86, 211, 447, 562
Bst6I CTCTTC 1 cut(s) 941
BstAFI CTTAAG 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 296, 731, 789
BstDEI CTNAG 6 cut(s) 290, 348, 372, 396, 413, 780
BstF5I GGATG 4 cut(s) 178, 678, 727, 742
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 919
BstHHI GCGC 2 cut(s) 17, 918
BstKTI GATC 4 cut(s) 153, 168, 367, 684
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 4 cut(s) 150, 165, 364, 681
BstMWI GCNNNNNNNGC 9 cut(s) 101, 240, 260, 295, 344, 644, 836, 839, 842
BstNI CCWGG 2 cut(s) 201, 669
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 2 cut(s) 199, 667
BstSFI CTRYAG 2 cut(s) 303, 834
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 8 cut(s) 91, 396, 771, 817, 820, 848, 851, 854
BstV2I GAAGAC 3 cut(s) 212, 346, 918
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 2 cut(s) 501, 692
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 1 cut(s) 492
BtsCI GGATG 4 cut(s) 178, 678, 727, 742
BtsIMutI CAGTG 4 cut(s) 33, 237, 486, 763
Cac8I GCNNGC 3 cut(s) 296, 731, 789
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 2 cut(s) 17, 918
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 1 cut(s) 491
Csp6I GTAC 1 cut(s) 558
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 3 cut(s) 163, 295, 953
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 6 cut(s) 290, 348, 372, 396, 413, 780
DpnI GATC 4 cut(s) 152, 167, 366, 683
DpnII GATC 4 cut(s) 150, 165, 364, 681
Eam1104I CTCTTC 1 cut(s) 941
EarI CTCTTC 1 cut(s) 941
Eco130I CCWWGG 3 cut(s) 270, 531, 685
Eco47III AGCGCT 1 cut(s) 917
Eco88I CYCGRG 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 199, 667
EcoT14I CCWWGG 3 cut(s) 270, 531, 685
EcoT22I ATGCAT 1 cut(s) 678
ErhI CCWWGG 3 cut(s) 270, 531, 685
FaeI CATG 3 cut(s) 166, 298, 956
FalI AAGNNNNNCTT 4 cut(s) 598, 630, 789, 821
FaqI GGGAC 1 cut(s) 562
FatI CATG 3 cut(s) 162, 294, 952
FbaI TGATCA 1 cut(s) 165
FokI GGATG 4 cut(s) 185, 685, 734, 749
FspBI CTAG 2 cut(s) 113, 135
FspI TGCGCA 1 cut(s) 16
GlaI GCGC 2 cut(s) 16, 917
GsuI CTGGAG 1 cut(s) 930
HaeII RGCGCY 1 cut(s) 919
HaeIII GGCC 1 cut(s) 492
HapII CCGG 1 cut(s) 567
HhaI GCGC 2 cut(s) 17, 918
Hin1II CATG 3 cut(s) 166, 298, 956
Hin6I GCGC 2 cut(s) 15, 916
HinP1I GCGC 2 cut(s) 15, 916
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 4 cut(s) 8, 310, 509, 602
HpaII CCGG 1 cut(s) 567
Hpy166II GTNNAC 2 cut(s) 82, 612
Hpy188I TCNGA 3 cut(s) 47, 335, 681
Hpy188III TCNNGA 7 cut(s) 22, 314, 467, 513, 599, 719, 909
Hpy8I GTNNAC 2 cut(s) 82, 612
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 794
HpyCH4III ACNGT 4 cut(s) 86, 211, 447, 562
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 6 cut(s) 176, 572, 647, 676, 791, 836
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 240, 260, 295, 344, 644, 836, 839, 842
HpyF3I CTNAG 6 cut(s) 290, 348, 372, 396, 413, 780
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 166, 298, 956
HspAI GCGC 2 cut(s) 15, 916
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 4 cut(s) 150, 165, 364, 681
LmnI GCTCC 2 cut(s) 336, 344
Lsp1109I GCAGC 8 cut(s) 91, 396, 771, 817, 820, 848, 851, 854
LweI GCATC 4 cut(s) 163, 517, 663, 685
MaeI CTAG 2 cut(s) 113, 135
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 31, 562
MalI GATC 4 cut(s) 152, 167, 366, 683
MboI GATC 4 cut(s) 150, 165, 364, 681
MboII GAAGA 5 cut(s) 217, 333, 346, 918, 928
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 7 cut(s) 38, 99, 192, 324, 690, 768, 816
MlyI GAGTC 3 cut(s) 2, 319, 503
MnlI CCTC 8 cut(s) 172, 343, 463, 509, 593, 720, 754, 949
Mph1103I ATGCAT 1 cut(s) 678
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 3 cut(s) 41, 285, 381
MspA1I CMGCKG 1 cut(s) 638
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 1 cut(s) 567
MspR9I CCNGG 2 cut(s) 201, 669
MunI CAATTG 1 cut(s) 768
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 2 cut(s) 201, 669
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 9 cut(s) 101, 240, 260, 295, 344, 644, 836, 839, 842
NdeII GATC 4 cut(s) 150, 165, 364, 681
NlaIII CATG 3 cut(s) 166, 298, 956
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 1 cut(s) 298
PaeI GCATGC 1 cut(s) 298
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 1 cut(s) 602
PinAI ACCGGT 1 cut(s) 566
PleI GAGTC 3 cut(s) 2, 318, 503
PpsI GAGTC 3 cut(s) 2, 318, 503
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 199, 667
PspGI CCWGG 2 cut(s) 199, 667
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 838
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SaqAI TTAA 3 cut(s) 41, 285, 381
Sau3AI GATC 4 cut(s) 150, 165, 364, 681
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 3 cut(s) 2, 319, 503
ScrFI CCNGG 2 cut(s) 201, 669
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 4 cut(s) 163, 517, 663, 685
SfcI CTRYAG 2 cut(s) 303, 834
SmlI CTYRAG 2 cut(s) 284, 711
SmoI CTYRAG 2 cut(s) 284, 711
SphI GCATGC 1 cut(s) 298
Sse9I AATT 7 cut(s) 38, 99, 192, 324, 690, 768, 816
SsiI CCGC 2 cut(s) 264, 660
SspI AATATT 1 cut(s) 651
SspMI CTAG 2 cut(s) 113, 135
StyD4I CCNGG 2 cut(s) 199, 667
StyI CCWWGG 3 cut(s) 270, 531, 685
TaaI ACNGT 4 cut(s) 86, 211, 447, 562
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 939
TasI AATT 7 cut(s) 38, 99, 192, 324, 690, 768, 816
TauI GCSGC 2 cut(s) 266, 663
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 3 cut(s) 41, 285, 381
Tru9I TTAA 3 cut(s) 41, 285, 381
TscAI CASTG 4 cut(s) 40, 244, 493, 763
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 8 cut(s) 104, 409, 784, 830, 833, 836, 839, 842
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 7 cut(s) 247, 346, 464, 495, 694, 753, 810
TspRI CASTG 4 cut(s) 40, 244, 493, 763
Vha464I CTTAAG 1 cut(s) 284
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 1 cut(s) 816
XceI RCATGY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 2 cut(s) 113, 135
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.