Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG041800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATCAAGGATGCAGAGGATAAAGGTCTAATTACACCAGGGAAGACTGTTCTTATTGAGCCTACAAGTGGCAACACTGGCATTGGATTGGCATTCATTGCCGCAACCAAGGGCTACAAGCTTAAGCTAAGCATGCCATCTATAGTGAGTCTTGAAAGAAGAATTGTGCTCCGAGCTTTTGGAGCTGAGGTCTTCATCACAGATCCTGCTAAGGGATTTAAGGGAGTTCTTGCTAAGGCAGATGAGCTGCTAAGCAACACACCTAATAGCTTTATGCTTCAACAGTTTGAAAACCCTGCCAATCCAGAGGTTCATTATGAAACCACTGGCCCAGAGATATGGAGAGACTCGGGAGGGAAAGTTGATGTCTTGGTTTCAGGGATAGGGACCGGGGGTACGGTAACCGGTGCAGGGAGTTTCCTCAAAGAGCAAAATCCAGATATCAAGGTGTATGGTGTAGAACCAGCTGAAAGTGCAATATTGAATGGCGGCAAACCAGGGATGCATCTGATCCAAGGAATTGGTGCTGGTTTCATACCTCAAGTTCTGGATGTTAGCTTGCTGGATGAAGTTATTCAAGTATCCAGTGAGGAAGCAATTGAAAATGCTAAGCTGCTTGCACTAAAAGAAGGTCTTTTGGTGGGAATTTCATCTGGTGCTGCTGCAGCAGCAGCAATAAAGTTGGCAAAGAAGCAAGAAAATGCTGGAAAACTGATAGTTGTTGTGTTCGCCAGTTCTGGAGAGCGATACCTGTCTTCGCCACTCTTCGATACCATTAGGCATGAGGCAGAAAATATGAAGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

269

Amino Acids

28.35

Weight (kDa)

5.29

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	7 - 243	2.9e-59	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	102, 489
AclWI	GGATC	2 cut(s)	197, 505
AcsI	RAATTY	1 cut(s)	645
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	3 cut(s)	68, 212, 411
AflII	CTTAAG	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	404
AgsI	TTSAA	7 cut(s)	155, 281, 290, 484, 578, 602, 806
AjnI	CCWGG	2 cut(s)	37, 496
AluBI	AGCT	9 cut(s)	121, 127, 176, 185, 247, 270, 467, 558, 613
AluI	AGCT	9 cut(s)	121, 127, 176, 185, 247, 270, 467, 558, 613
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	197, 505
AlwNI	CAGNNNCTG	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	349
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	7 cut(s)	247, 613, 659, 662, 665, 668, 671
ApoI	RAATTY	1 cut(s)	645
AsiGI	ACCGGT	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	573
AspS9I	GGNCC	2 cut(s)	329, 387
AsuC2I	CCSGG	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	387
BbsI	GAAGAC	3 cut(s)	50, 184, 747
Bbv12I	GWGCWC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	7 cut(s)	234, 600, 646, 649, 677, 680, 683
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	39, 498
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	339
BfmI	CTRYAG	2 cut(s)	141, 663
BfrI	CTTAAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	592
BisI	GCNGC	9 cut(s)	102, 248, 490, 614, 660, 663, 666, 669, 672
BlpI	GCTNAGC	3 cut(s)	128, 251, 609
BlsI	GCNGC	9 cut(s)	103, 249, 491, 615, 661, 664, 667, 670, 673
Bme1390I	CCNGG	3 cut(s)	39, 391, 498
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	329, 387
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	3 cut(s)	39, 391, 498
BmsI	GCATC	2 cut(s)	492, 514
BpiI	GAAGAC	3 cut(s)	50, 184, 747
BpmI	CTGGAG	1 cut(s)	759
Bpu10I	CCTNAGC	3 cut(s)	186, 210, 234
Bpu1102I	GCTNAGC	3 cut(s)	128, 251, 609
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	391
BsaJI	CCNNGG	5 cut(s)	38, 108, 390, 497, 514
BsaWI	WCCGGW	1 cut(s)	404
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 345, 375
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 212, 411
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	4 cut(s)	82, 331, 585, 732
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	39, 498
BseDI	CCNNGG	5 cut(s)	38, 108, 390, 497, 514
BseGI	GGATG	4 cut(s)	16, 507, 556, 571
BseLI	CCNNNNNNNGG	3 cut(s)	68, 212, 411
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	4 cut(s)	82, 331, 585, 732
BseXI	GCAGC	7 cut(s)	234, 600, 646, 649, 677, 680, 683
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	330
BshTI	ACCGGT	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	390, 405
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	68, 212, 411
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	3, 202, 510
Bsp1720I	GCTNAGC	3 cut(s)	128, 251, 609
BspACI	CCGC	2 cut(s)	102, 489
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	388
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	2 cut(s)	197, 505
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	4 cut(s)	82, 331, 585, 732
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	5 cut(s)	38, 108, 390, 497, 514
BssMI	GATC	3 cut(s)	3, 202, 510
BssT1I	CCWWGG	2 cut(s)	108, 514
Bst2UI	CCWGG	2 cut(s)	39, 498
Bst4CI	ACNGT	3 cut(s)	49, 285, 400
Bst6I	CTCTTC	1 cut(s)	770
BstAFI	CTTAAG	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	134, 560, 618
BstDEI	CTNAG	6 cut(s)	128, 186, 210, 234, 251, 609
BstEII	GGTNACC	1 cut(s)	400
BstF5I	GGATG	4 cut(s)	16, 507, 556, 571
BstKTI	GATC	3 cut(s)	6, 205, 513
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	3, 202, 510
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 98, 133, 182, 473, 665, 668, 671
BstNI	CCWGG	2 cut(s)	39, 498
BstNSI	RCATGY	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	3 cut(s)	37, 389, 496
BstSFI	CTRYAG	2 cut(s)	141, 663
BstV1I	GCAGC	7 cut(s)	234, 600, 646, 649, 677, 680, 683
BstV2I	GAAGAC	3 cut(s)	50, 184, 747
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	2 cut(s)	339, 521
BstYI	RGATCY	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	4 cut(s)	16, 507, 556, 571
BtsIMutI	CAGTG	3 cut(s)	75, 324, 592
Cac8I	GCNNGC	3 cut(s)	134, 560, 618
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	329, 387
Csp6I	GTAC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	404
CviAII	CATG	2 cut(s)	133, 782
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	6 cut(s)	128, 186, 210, 234, 251, 609
DpnI	GATC	3 cut(s)	5, 204, 512
DpnII	GATC	3 cut(s)	3, 202, 510
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Eco130I	CCWWGG	2 cut(s)	108, 514
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	349
Eco91I	GGTNACC	1 cut(s)	400
EcoO65I	GGTNACC	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	37, 496
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	108, 514
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	108, 514
FaeI	CATG	2 cut(s)	136, 785
FaiI	YATR	9 cut(s)	134, 143, 275, 318, 340, 453, 536, 783, 797
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	2 cut(s)	132, 781
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	9 cut(s)	102, 248, 490, 614, 660, 663, 666, 669, 672
FokI	GGATG	4 cut(s)	23, 514, 563, 578
Fsp4HI	GCNGC	9 cut(s)	102, 248, 490, 614, 660, 663, 666, 669, 672
GluI	GCNGC	9 cut(s)	102, 248, 490, 614, 660, 663, 666, 669, 672
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	390, 405
Hin1II	CATG	2 cut(s)	136, 785
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	148, 347
HpaII	CCGG	2 cut(s)	390, 405
Hpy188I	TCNGA	2 cut(s)	173, 510
Hpy188III	TCNNGA	6 cut(s)	152, 305, 351, 437, 548, 738
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	3 cut(s)	49, 285, 400
HpyCH4V	TGCA	6 cut(s)	14, 410, 476, 505, 620, 665
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 98, 133, 182, 473, 665, 668, 671
HpyF3I	CTNAG	6 cut(s)	128, 186, 210, 234, 251, 609
Hsp92II	CATG	2 cut(s)	136, 785
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 202, 510
LmnI	GCTCC	2 cut(s)	174, 182
Lsp1109I	GCAGC	7 cut(s)	234, 600, 646, 649, 677, 680, 683
LweI	GCATC	2 cut(s)	492, 514
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	3 cut(s)	5, 204, 512
MboI	GATC	3 cut(s)	3, 202, 510
MboII	GAAGA	5 cut(s)	55, 171, 184, 747, 757
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	5 cut(s)	30, 162, 519, 597, 645
MlyI	GAGTC	2 cut(s)	157, 341
MnlI	CCTC	8 cut(s)	10, 181, 301, 347, 431, 549, 583, 778
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	2 cut(s)	123, 219
MspA1I	CMGCKG	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	2 cut(s)	390, 405
MspR9I	CCNGG	3 cut(s)	39, 391, 498
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	2 cut(s)	39, 498
MwoI	GCNNNNNNNGC	8 cut(s)	78, 98, 133, 182, 473, 665, 668, 671
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	3 cut(s)	3, 202, 510
NlaIII	CATG	2 cut(s)	136, 785
NlaIV	GGNNCC	1 cut(s)	388
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	573
PinAI	ACCGGT	1 cut(s)	404
PkrI	GCNGC	9 cut(s)	103, 249, 491, 615, 661, 664, 667, 670, 673
PleI	GAGTC	2 cut(s)	156, 341
PpsI	GAGTC	2 cut(s)	156, 341
Psp6I	CCWGG	2 cut(s)	37, 496
PspEI	GGTNACC	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	37, 496
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	2 cut(s)	329, 387
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	123, 219
SatI	GCNGC	9 cut(s)	102, 248, 490, 614, 660, 663, 666, 669, 672
Sau3AI	GATC	3 cut(s)	3, 202, 510
Sau96I	GGNCC	2 cut(s)	329, 387
SchI	GAGTC	2 cut(s)	157, 341
ScrFI	CCNGG	3 cut(s)	39, 391, 498
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	2 cut(s)	492, 514
SfcI	CTRYAG	2 cut(s)	141, 663
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	122, 540
SmoI	CTYRAG	2 cut(s)	122, 540
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	5 cut(s)	30, 162, 519, 597, 645
SsiI	CCGC	2 cut(s)	102, 489
SspI	AATATT	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	37, 389, 496
StyI	CCWWGG	2 cut(s)	108, 514
TaaI	ACNGT	3 cut(s)	49, 285, 400
TaqI	TCGA	1 cut(s)	768
TasI	AATT	5 cut(s)	30, 162, 519, 597, 645
TauI	GCSGC	2 cut(s)	104, 492
Tru1I	TTAA	2 cut(s)	123, 219
Tru9I	TTAA	2 cut(s)	123, 219
TscAI	CASTG	3 cut(s)	82, 331, 592
TseI	GCWGC	7 cut(s)	247, 613, 659, 662, 665, 668, 671
TspDTI	ATGAA	7 cut(s)	85, 184, 302, 333, 523, 582, 639
TspRI	CASTG	3 cut(s)	82, 331, 592
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	1 cut(s)	645
XceI	RCATGY	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	573
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.