Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

75230892 .. 75233120

Gene Structure 2229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0639900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGATCTTTCTCCGACGCGGATTCTCAATCCGAAACGCGCTTCTCCGACGAAGCTCAGCTCTGTACAGCTGCGATCTCCCGCTCTGCAACTCCGAGACGCCGCAGAGGATTCTCTCTCTTCCGGCTCTTGAATTTGTGAAAGAAAGTCGCAGAGGCTTCGCCAAAGGCCGTAAATCAAATGAATCGTCTGGAACTACAATGGAGGTTTTACCAGATATGGGACCCACCATCAAGGCCAATGCGACCTCACATATGGAGGCTGCAATTGCAGCATTGTCAGTAGAACTGAGCAAACTACGCACCGGAAGAGCATCACCAGGAATGCTGGACCACATTATTGTGGAAACCAGCGGGTTGAAGCTGCCCTTGCATCAGATAGCGGTTGTTTCAGTCATGGATTCAAAAACGTTATCGATCAATCCGTTTGATCCAAATGCCTTGAAAAATATAGAGACTGCCATTGTTGAATCTCCCTTGGGTTTAAATCCTAAAACCGATGGGGAGCGATTGATTGCTGCTATTCCTCCATTGACCAAGGAGCATGTTCAGGCTATCTGTAAAGTGGTTAACAAGTCTTGTGAAGATGGCAGACTAAGCATAAGAAGAGGTCGCCAAAAGGCAATGGATACAATTAAAAAGCTATATTCAAGCTACCCTAAGGACAACTTAAAAAGACTGGAGAAAGAGGTTGAGGAGCTGACTAAAAAGCATATCAAGAAAGCAGAGGACTTGTGCAAGGCAAAGGAGAAGGAGATTGCTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

256

Amino Acids

28.16

Weight (kDa)

9.53

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	95 - 253	2.8e-53	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AccII	CGCG	2 cut(s)	21, 41
AciI	CCGC	5 cut(s)	21, 83, 104, 354, 383
AclI	AACGTT	1 cut(s)	410
AclWI	GGATC	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	6 cut(s)	134, 361, 405, 445, 470, 651
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	7 cut(s)	57, 62, 72, 364, 643, 654, 700
AluI	AGCT	7 cut(s)	57, 62, 72, 364, 643, 654, 700
Alw26I	GTCTC	2 cut(s)	92, 449
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	2 cut(s)	169, 237
ApeKI	GCWGC	5 cut(s)	72, 263, 272, 364, 518
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	224, 331
AsuHPI	GGTGA	1 cut(s)	309
AvaII	GGWCC	2 cut(s)	224, 331
AxyI	CCTNAGG	1 cut(s)	660
BbvI	GCAGC	5 cut(s)	59, 250, 284, 351, 505
BccI	CCATC	3 cut(s)	239, 494, 581
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	92, 449
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	6 cut(s)	73, 104, 264, 273, 365, 519
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	6 cut(s)	74, 105, 265, 274, 366, 520
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	2 cut(s)	224, 331
BmgT120I	GGNCC	2 cut(s)	224, 331
BmiI	GGNNCC	2 cut(s)	225, 226
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	323, 382
BpmI	CTGGAG	1 cut(s)	701
Bpu1102I	GCTNAGC	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	477, 537
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	684
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	477, 537
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	2 cut(s)	72, 281
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	1 cut(s)	710
BseXI	GCAGC	5 cut(s)	59, 250, 284, 351, 505
Bsh1236I	CGCG	2 cut(s)	21, 41
BshFI	GGCC	2 cut(s)	171, 239
BshVI	ATCGAT	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	125, 306
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	92, 449
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	171, 239
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	4 cut(s)	6, 76, 417, 430
Bsp1720I	GCTNAGC	1 cut(s)	58
BspACI	CCGC	5 cut(s)	21, 83, 104, 354, 383
BspANI	GGCC	2 cut(s)	171, 239
BspCNI	CTCAG	2 cut(s)	71, 282
BspDI	ATCGAT	1 cut(s)	416
BspFNI	CGCG	2 cut(s)	21, 41
BspLI	GGNNCC	2 cut(s)	225, 226
BspPI	GGATC	1 cut(s)	425
BspQI	GCTCTTC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	630
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	2 cut(s)	477, 537
BssMI	GATC	4 cut(s)	6, 76, 417, 430
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	477, 537
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	3 cut(s)	126, 304, 601
BstACI	GRCGYC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	66
BstDEI	CTNAG	4 cut(s)	58, 290, 596, 660
BstFNI	CGCG	2 cut(s)	21, 41
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	4 cut(s)	9, 79, 420, 433
BstMAI	GTCTC	2 cut(s)	92, 449
BstMBI	GATC	4 cut(s)	6, 76, 417, 430
BstMWI	GCNNNNNNNGC	5 cut(s)	269, 272, 300, 370, 597
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	319
BstUI	CGCG	2 cut(s)	21, 41
BstV1I	GCAGC	5 cut(s)	59, 250, 284, 351, 505
Bsu15I	ATCGAT	1 cut(s)	416
Bsu36I	CCTNAGG	1 cut(s)	660
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	171, 239
BsuTUI	ATCGAT	1 cut(s)	416
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	224, 331
ClaI	ATCGAT	1 cut(s)	416
CseI	GACGC	2 cut(s)	27, 109
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	2 cut(s)	397, 545
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	4 cut(s)	58, 290, 596, 660
DpnI	GATC	4 cut(s)	8, 78, 419, 432
DpnII	GATC	4 cut(s)	6, 76, 417, 430
DraI	TTTAAA	1 cut(s)	486
Eam1104I	CTCTTC	3 cut(s)	126, 304, 601
EarI	CTCTTC	3 cut(s)	126, 304, 601
Eco130I	CCWWGG	2 cut(s)	477, 537
Eco47I	GGWCC	2 cut(s)	224, 331
Eco81I	CCTNAGG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	477, 537
ErhI	CCWWGG	2 cut(s)	477, 537
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	2 cut(s)	400, 548
FaiI	YATR	9 cut(s)	221, 255, 257, 398, 452, 546, 602, 646, 714
FalI	AAGNNNNNCTT	4 cut(s)	353, 385, 653, 685
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	2 cut(s)	396, 544
FauI	CCCGC	2 cut(s)	90, 347
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	6 cut(s)	73, 104, 264, 273, 365, 519
Fsp4HI	GCNGC	6 cut(s)	73, 104, 264, 273, 365, 519
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	6 cut(s)	73, 104, 264, 273, 365, 519
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	2 cut(s)	171, 239
HapII	CCGG	2 cut(s)	125, 306
HgaI	GACGC	2 cut(s)	27, 109
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	400, 548
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	5 cut(s)	24, 112, 185, 401, 470
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	125, 306
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	5 cut(s)	17, 35, 50, 97, 378
Hpy188III	TCNNGA	3 cut(s)	131, 192, 718
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	2 cut(s)	21, 54
HpyAV	CCTTC	1 cut(s)	745
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	5 cut(s)	90, 266, 272, 373, 738
HpyF10VI	GCNNNNNNNGC	5 cut(s)	269, 272, 300, 370, 597
HpyF3I	CTNAG	4 cut(s)	58, 290, 596, 660
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	400, 548
HspAI	GCGC	1 cut(s)	41
KflI	GGGWCCC	1 cut(s)	224
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	6, 76, 417, 430
LguI	GCTCTTC	1 cut(s)	304
LmnI	GCTCC	3 cut(s)	505, 541, 697
Lsp1109I	GCAGC	5 cut(s)	59, 250, 284, 351, 505
LweI	GCATC	2 cut(s)	323, 382
MaeII	ACGT	1 cut(s)	410
MalI	GATC	4 cut(s)	8, 78, 419, 432
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	4 cut(s)	6, 76, 417, 430
MboII	GAAGA	4 cut(s)	113, 321, 596, 618
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	3 cut(s)	134, 267, 633
MmeI	TCCRAC	2 cut(s)	40, 73
MseI	TTAA	5 cut(s)	485, 570, 636, 671, 769
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	2 cut(s)	72, 354
MspI	CCGG	2 cut(s)	125, 306
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	2 cut(s)	21, 41
MwoI	GCNNNNNNNGC	5 cut(s)	269, 272, 300, 370, 597
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	4 cut(s)	6, 76, 417, 430
NlaIII	CATG	2 cut(s)	400, 548
NlaIV	GGNNCC	2 cut(s)	225, 226
NspI	RCATGY	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	5 cut(s)	24, 112, 185, 401, 470
PkrI	GCNGC	6 cut(s)	74, 105, 265, 274, 366, 520
PpuMI	RGGWCCY	1 cut(s)	224
Psp1406I	AACGTT	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	225, 226
PspPI	GGNCC	2 cut(s)	224, 331
PspPPI	RGGWCCY	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	72
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	304
SaqAI	TTAA	5 cut(s)	485, 570, 636, 671, 769
SatI	GCNGC	6 cut(s)	73, 104, 264, 273, 365, 519
Sau3AI	GATC	4 cut(s)	6, 76, 417, 430
Sau96I	GGNCC	2 cut(s)	224, 331
ScrFI	CCNGG	1 cut(s)	321
SfaNI	GCATC	2 cut(s)	323, 382
SinI	GGWCC	2 cut(s)	224, 331
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	134, 267, 633
SsiI	CCGC	5 cut(s)	21, 83, 104, 354, 383
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	2 cut(s)	477, 537
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	416
TasI	AATT	3 cut(s)	134, 267, 633
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	5 cut(s)	24, 112, 185, 401, 470
Tru1I	TTAA	5 cut(s)	485, 570, 636, 671, 769
Tru9I	TTAA	5 cut(s)	485, 570, 636, 671, 769
TseI	GCWGC	5 cut(s)	72, 263, 272, 364, 518
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	414
VpaK11BI	GGWCC	2 cut(s)	224, 331
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.