Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

2815278 .. 2819653

Gene Structure 4376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCTTAGGCCGCTGTTTCTGTTATTTGATTCTATTATTCGTGTAAATATGTTATTTGATTCTATTATTCGTTTAATCGGAAATACCCCAATGGTGTACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGACGATGGAACCCTGCTCTAGTGTTAAAGACAGGATTGCACATAGTATGATCAAGGATGCGGAGGATAAAGGTCTGATAACTCCGGGAAAGACTGTTCTCATTGAGCCCACAGGTGGCAACACTGGCATTGGATTAGCATCCATAGCAGCTAGCAAGGGTTACAAGCTGAAGCTAGTCATGCCATCATCATATAGTTTTGAAAGAAGAATTGTGCTCCTAGCTTTTGGAGCTGAGGTACACCTCACATATGGGGACAAAGGTTTTCAGGAAGTTCTTGATAAGGCCGAGGAGTTGCTACGTGAAACACCCGATAGTCATATGCTTCAGCAATTTGAAAATCCTGCCAATCCAAAGATTCATTACGAAACCACTGGGCCGGAGATATGGAGAGACTCAGCAGGGAAAGTAGATATCTTGGTTTCAGGGATAGGAACCGGTGGCACAGTAACCGGTATAGGGAAATTTCTTAAAGTGCAAAATCCAGAGATCAAGGTGTATGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATAGTGGTCCACCTGGAAAGCATCTGATCCAAGGAATCGGTTCTGGCTTCATTCCTCAAGTTCTTGATGTTAGCCTGCTAGATGAAGTTATTCCAGTATCCGGTGAGGAATCTATTGAGACTGGTAAGCTACTTGCCTTAAAGAAGGTGGGATTTTCATCTGGTGCAGCAACAGCAGCAGCAGTAAAGTTGGCAAAAAGGCCGGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGCACTATTTGATACCATTAGGCATGAGGCAGAAAACATGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

330

Amino Acids

35.55

Weight (kDa)

5.94

Isoelectric Point (pI)

25.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	24 - 306	6.2e-65	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	941
AciI	CCGC	3 cut(s)	11, 209, 931
AclWI	GGATC	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	2 cut(s)	338, 458
AfaI	GTAC	2 cut(s)	98, 387
AfiI	CCNNNNNNNGG	4 cut(s)	263, 606, 779, 923
AgeI	ACCGGT	2 cut(s)	584, 599
AgsI	TTSAA	3 cut(s)	350, 485, 679
AjnI	CCWGG	1 cut(s)	691
AloI	GAACNNNNNNTCC	2 cut(s)	228, 260
AluBI	AGCT	8 cut(s)	128, 145, 299, 316, 322, 371, 380, 808
AluI	AGCT	8 cut(s)	128, 145, 299, 316, 322, 371, 380, 808
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	3 cut(s)	143, 534, 791
AlwI	GGATC	1 cut(s)	700
AoxI	GGCC	4 cut(s)	8, 432, 524, 878
ApeKI	GCWGC	5 cut(s)	137, 296, 845, 854, 857
ApoI	RAATTY	1 cut(s)	611
AsiGI	ACCGGT	2 cut(s)	584, 599
Asp700I	GAANNNNTTC	2 cut(s)	718, 768
AspS9I	GGNCC	2 cut(s)	524, 686
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	794
AsuNHI	GCTAGC	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	5 cut(s)	124, 308, 857, 866, 869
BccI	CCATC	2 cut(s)	148, 340
BciT130I	CCWGG	1 cut(s)	693
BciVI	GTATCC	1 cut(s)	787
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	143, 534, 791
BfaI	CTAG	6 cut(s)	146, 168, 300, 323, 368, 758
BfuI	GTATCC	1 cut(s)	787
BisI	GCNGC	6 cut(s)	11, 138, 297, 846, 855, 858
BlsI	GCNGC	6 cut(s)	12, 139, 298, 847, 856, 859
Bme1390I	CCNGG	2 cut(s)	234, 693
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	524, 686
BmiI	GGNNCC	2 cut(s)	159, 583
BmrFI	CCNGG	2 cut(s)	234, 693
BmrI	ACTGGG	2 cut(s)	531, 912
BmsI	GCATC	3 cut(s)	196, 296, 709
BmtI	GCTAGC	1 cut(s)	303
BmuI	ACTGGG	2 cut(s)	531, 912
Bpu10I	CCTNAGC	2 cut(s)	5, 381
BpuEI	CTTGAG	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	449
BsaBI	GATNNNNATC	2 cut(s)	286, 835
BsaJI	CCNNGG	2 cut(s)	435, 709
BsaWI	WCCGGW	3 cut(s)	584, 599, 779
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 606, 779, 923
Bse118I	RCCGGY	2 cut(s)	584, 599
Bse1I	ACTGG	6 cut(s)	277, 526, 659, 773, 805, 918
Bse8I	GATNNNNATC	2 cut(s)	286, 835
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	435, 709
BseGI	GGATG	2 cut(s)	211, 287
BseJI	GATNNNNATC	2 cut(s)	286, 835
BseLI	CCNNNNNNNGG	4 cut(s)	263, 606, 779, 923
BseMII	CTCAG	2 cut(s)	372, 558
BseNI	ACTGG	6 cut(s)	277, 526, 659, 773, 805, 918
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	5 cut(s)	124, 308, 857, 866, 869
BsgI	GTGCAG	3 cut(s)	690, 864, 930
BshFI	GGCC	4 cut(s)	10, 434, 526, 880
BshTI	ACCGGT	2 cut(s)	584, 599
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	7 cut(s)	233, 527, 585, 600, 780, 881, 891
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	4 cut(s)	263, 606, 779, 923
BsmAI	GTCTC	3 cut(s)	143, 534, 791
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	10, 434, 526, 880
Bsp1286I	GDGCHC	2 cut(s)	258, 366
Bsp143I	GATC	3 cut(s)	198, 636, 705
BspACI	CCGC	3 cut(s)	11, 209, 931
BspANI	GGCC	4 cut(s)	10, 434, 526, 880
BspCNI	CTCAG	2 cut(s)	373, 557
BspLI	GGNNCC	2 cut(s)	159, 583
BspOI	GCTAGC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	700
BsrBI	CCGCTC	1 cut(s)	931
BsrFI	RCCGGY	2 cut(s)	584, 599
BsrI	ACTGG	6 cut(s)	277, 526, 659, 773, 805, 918
BssAI	RCCGGY	2 cut(s)	584, 599
BssECI	CCNNGG	2 cut(s)	435, 709
BssMI	GATC	3 cut(s)	198, 636, 705
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	2 cut(s)	244, 595
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	301, 755
BstDEI	CTNAG	3 cut(s)	5, 381, 544
BstF5I	GGATG	2 cut(s)	211, 287
BstKTI	GATC	3 cut(s)	201, 639, 708
BstMAI	GTCTC	3 cut(s)	143, 534, 791
BstMBI	GATC	3 cut(s)	198, 636, 705
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 134, 273, 293, 328, 377, 851, 854
BstNI	CCWGG	1 cut(s)	693
BstSCI	CCNGG	2 cut(s)	232, 691
BstV1I	GCAGC	5 cut(s)	124, 308, 857, 866, 869
BsuI	GTATCC	1 cut(s)	787
BsuRI	GGCC	4 cut(s)	10, 434, 526, 880
BtsCI	GGATG	2 cut(s)	211, 287
BtsIMutI	CAGTG	2 cut(s)	270, 519
Cac8I	GCNNGC	2 cut(s)	301, 755
Cfr10I	RCCGGY	2 cut(s)	584, 599
Cfr13I	GGNCC	2 cut(s)	524, 686
Csp6I	GTAC	2 cut(s)	97, 386
CspAI	ACCGGT	2 cut(s)	584, 599
CviAII	CATG	3 cut(s)	328, 968, 982
CviQI	GTAC	2 cut(s)	97, 386
DdeI	CTNAG	3 cut(s)	5, 381, 544
DpnI	GATC	3 cut(s)	200, 638, 707
DpnII	GATC	3 cut(s)	198, 636, 705
Eco130I	CCWWGG	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	2 cut(s)	338, 458
EcoRII	CCWGG	1 cut(s)	691
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	709
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	3 cut(s)	331, 971, 985
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	3 cut(s)	327, 967, 981
FauNDI	CATATG	2 cut(s)	397, 468
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	941
Fnu4HI	GCNGC	6 cut(s)	11, 138, 297, 846, 855, 858
FokI	GGATG	2 cut(s)	218, 274
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	6 cut(s)	11, 138, 297, 846, 855, 858
FspBI	CTAG	6 cut(s)	146, 168, 300, 323, 368, 758
GluI	GCNGC	6 cut(s)	11, 138, 297, 846, 855, 858
HaeIII	GGCC	4 cut(s)	10, 434, 526, 880
HapII	CCGG	7 cut(s)	233, 527, 585, 600, 780, 881, 891
Hin1II	CATG	3 cut(s)	331, 971, 985
HinfI	GANTC	6 cut(s)	29, 59, 505, 542, 714, 788
HpaII	CCGG	7 cut(s)	233, 527, 585, 600, 780, 881, 891
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	4 cut(s)	97, 388, 689, 942
Hpy188I	TCNGA	3 cut(s)	80, 225, 705
Hpy188III	TCNNGA	5 cut(s)	416, 425, 632, 676, 743
Hpy8I	GTNNAC	4 cut(s)	97, 388, 689, 942
HpyAV	CCTTC	2 cut(s)	110, 817
HpyCH4III	ACNGT	2 cut(s)	244, 595
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	5 cut(s)	188, 625, 671, 845, 947
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 134, 273, 293, 328, 377, 851, 854
HpyF3I	CTNAG	3 cut(s)	5, 381, 544
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	3 cut(s)	331, 971, 985
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	198, 636, 705
LmnI	GCTCC	2 cut(s)	369, 377
Lsp1109I	GCAGC	5 cut(s)	124, 308, 857, 866, 869
LweI	GCATC	3 cut(s)	196, 296, 709
MaeI	CTAG	6 cut(s)	146, 168, 300, 323, 368, 758
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	308, 595
MalI	GATC	3 cut(s)	200, 638, 707
MbiI	CCGCTC	1 cut(s)	931
MboI	GATC	3 cut(s)	198, 636, 705
MboII	GAAGA	1 cut(s)	366
MhlI	GDGCHC	2 cut(s)	258, 366
MluCI	AATT	3 cut(s)	357, 479, 611
MlyI	GAGTC	1 cut(s)	536
MnlI	CCTC	7 cut(s)	205, 376, 401, 430, 744, 778, 964
MroXI	GAANNNNTTC	2 cut(s)	718, 768
MseI	TTAA	4 cut(s)	74, 174, 618, 818
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	7 cut(s)	233, 527, 585, 600, 780, 881, 891
MspR9I	CCNGG	2 cut(s)	234, 693
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	8 cut(s)	10, 134, 273, 293, 328, 377, 851, 854
NciI	CCSGG	1 cut(s)	234
NdeI	CATATG	2 cut(s)	397, 468
NdeII	GATC	3 cut(s)	198, 636, 705
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	3 cut(s)	331, 971, 985
NlaIV	GGNNCC	2 cut(s)	159, 583
NmeAIII	GCCGAG	1 cut(s)	460
PdmI	GAANNNNTTC	2 cut(s)	718, 768
PfeI	GAWTC	5 cut(s)	29, 59, 505, 714, 788
PfoI	TCCNGGA	1 cut(s)	232
PinAI	ACCGGT	2 cut(s)	584, 599
PkrI	GCNGC	6 cut(s)	12, 139, 298, 847, 856, 859
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
Ppu21I	YACGTR	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	2 cut(s)	159, 583
PspPI	GGNCC	2 cut(s)	524, 686
RsaI	GTAC	2 cut(s)	98, 387
RsaNI	GTAC	2 cut(s)	97, 386
SaqAI	TTAA	4 cut(s)	74, 174, 618, 818
SatI	GCNGC	6 cut(s)	11, 138, 297, 846, 855, 858
Sau3AI	GATC	3 cut(s)	198, 636, 705
Sau96I	GGNCC	2 cut(s)	524, 686
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	234, 693
SduI	GDGCHC	2 cut(s)	258, 366
SfaNI	GCATC	3 cut(s)	196, 296, 709
SinI	GGWCC	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	3 cut(s)	357, 479, 611
SsiI	CCGC	3 cut(s)	11, 209, 931
SspMI	CTAG	6 cut(s)	146, 168, 300, 323, 368, 758
StyD4I	CCNGG	2 cut(s)	232, 691
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	2 cut(s)	244, 595
TaiI	ACGT	1 cut(s)	451
TasI	AATT	3 cut(s)	357, 479, 611
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	5 cut(s)	29, 59, 505, 714, 788
Tru1I	TTAA	4 cut(s)	74, 174, 618, 818
Tru9I	TTAA	4 cut(s)	74, 174, 618, 818
TscAI	CASTG	2 cut(s)	277, 526
TseI	GCWGC	5 cut(s)	137, 296, 845, 854, 857
TspDTI	ATGAA	4 cut(s)	497, 718, 777, 825
TspRI	CASTG	2 cut(s)	277, 526
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	941
XmnI	GAANNNNTTC	2 cut(s)	718, 768
XspI	CTAG	6 cut(s)	146, 168, 300, 323, 368, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.