Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

10026152 .. 10028722

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAAGATCGGTGCTTGATCAAGAACGATATCACTGAATTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGTATCGCTGCGAAGCTTGAGATGATGGAGCCTTGTTCTAGCGTCAAAGACAGAATCGCGTATAGTATGATCAAAGATGCAGAAGACAAAGGATTGATTACTCCCGGAAAGAGTACATTGATAGAGCCAACTGCTGGTAACACCGGGATTGGTTTAGCTTGCATGGGAGCTGCAAGAGGCTATAAAGTGATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAGGGCACTAGGTGCAGAGCTTCATCTCTCGGACCAGCGCATAGGCCTTAAAGGAATGTTGGAGAAAACTGAAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGAAAATCCTGCAAACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTCAGCCGGGAAAGTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGTAGGGAAGTTCCTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGAAAGTCCGGTACTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGGTATCGTCCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTGAAGAGGCTATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATATCCTCTGGAGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGAAACTCATTGTGGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGATTAGATATGAAGCAGAGAATTTGCCTATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

323

Amino Acids

34.32

Weight (kDa)

5.49

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 298	6.7e-73	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	737
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccII	CGCG	2 cut(s)	155, 866
AciI	CCGC	5 cut(s)	648, 822, 830, 853, 866
AclI	AACGTT	1 cut(s)	907
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	854
AcsI	RAATTY	1 cut(s)	955
AcuI	CTGAAG	1 cut(s)	423
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	211, 642
AfiI	CCNNNNNNNGG	3 cut(s)	230, 487, 899
AgsI	TTSAA	6 cut(s)	303, 452, 706, 740, 764, 968
AjnI	CCWGG	2 cut(s)	424, 658
AluBI	AGCT	6 cut(s)	112, 254, 266, 312, 352, 775
AluI	AGCT	6 cut(s)	112, 254, 266, 312, 352, 775
AlwI	GGATC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	833
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	2 cut(s)	376, 854
ApeKI	GCWGC	5 cut(s)	104, 266, 824, 827, 833
ApoI	RAATTY	1 cut(s)	955
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	364, 491, 662
AsuC2I	CCSGG	3 cut(s)	201, 241, 517
AsuHPI	GGTGA	1 cut(s)	761
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	3 cut(s)	364, 491, 662
BaeGI	GKGCMC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	5 cut(s)	91, 253, 820, 836, 839
BccI	CCATC	2 cut(s)	77, 115
BciT130I	CCWGG	2 cut(s)	426, 660
BclI	TGATCA	2 cut(s)	18, 165
BcnI	CCSGG	3 cut(s)	201, 241, 517
BfaI	CTAG	3 cut(s)	135, 341, 894
BfuAI	ACCTGC	1 cut(s)	737
BisI	GCNGC	8 cut(s)	105, 267, 822, 825, 828, 831, 834, 854
BlsI	GCNGC	8 cut(s)	106, 268, 823, 826, 829, 832, 835, 855
Bme1390I	CCNGG	5 cut(s)	201, 241, 426, 517, 660
Bme18I	GGWCC	3 cut(s)	364, 491, 662
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	3 cut(s)	364, 491, 662
BmiI	GGNNCC	4 cut(s)	126, 492, 624, 820
BmrFI	CCNGG	5 cut(s)	201, 241, 426, 517, 660
BmsI	GCATC	2 cut(s)	163, 285
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	2 cut(s)	588, 837
BpuEI	CTTGAG	2 cut(s)	134, 569
BpuMI	CCSGG	3 cut(s)	201, 241, 517
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	2 cut(s)	493, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 487, 899
Bse1I	ACTGG	4 cut(s)	556, 571, 626, 804
BseBI	CCWGG	2 cut(s)	426, 660
BseDI	CCNNGG	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	230, 487, 899
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	4 cut(s)	556, 571, 626, 804
BseRI	GAGGAG	1 cut(s)	915
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	5 cut(s)	91, 253, 820, 836, 839
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	2 cut(s)	155, 866
BshFI	GGCC	2 cut(s)	378, 856
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	5 cut(s)	201, 240, 494, 516, 638
BslFI	GGGAC	3 cut(s)	504, 562, 683
BslI	CCNNNNNNNGG	3 cut(s)	230, 487, 899
BsmFI	GGGAC	3 cut(s)	504, 562, 683
BsnI	GGCC	2 cut(s)	378, 856
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	7, 18, 165, 285
BspACI	CCGC	5 cut(s)	648, 822, 830, 853, 866
BspANI	GGCC	2 cut(s)	378, 856
BspCNI	CTCAG	1 cut(s)	324
BspFNI	CGCG	2 cut(s)	155, 866
BspLI	GGNNCC	4 cut(s)	126, 492, 624, 820
BspMI	ACCTGC	1 cut(s)	737
BspPI	GGATC	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	556, 571, 626, 804
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	4 cut(s)	7, 18, 165, 285
Bst2UI	CCWGG	2 cut(s)	426, 660
Bst4CI	ACNGT	1 cut(s)	927
Bst6I	CTCTTC	1 cut(s)	747
BstAPI	GCANNNNNTGC	2 cut(s)	344, 833
BstC8I	GCNNGC	2 cut(s)	256, 541
BstDEI	CTNAG	3 cut(s)	313, 332, 644
BstDSI	CCRYGG	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	897
BstFNI	CGCG	2 cut(s)	155, 866
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	4 cut(s)	10, 21, 168, 288
BstMBI	GATC	4 cut(s)	7, 18, 165, 285
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 344, 827, 830, 833
BstNI	CCWGG	2 cut(s)	426, 660
BstSCI	CCNGG	5 cut(s)	199, 239, 424, 515, 658
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	2 cut(s)	155, 866
BstV1I	GCAGC	5 cut(s)	91, 253, 820, 836, 839
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	378, 856
BtgI	CCRYGG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	737
Cac8I	GCNNGC	2 cut(s)	256, 541
CaiI	CAGNNNCTG	1 cut(s)	833
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	3 cut(s)	364, 491, 662
CseI	GACGC	1 cut(s)	127
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	2 cut(s)	210, 641
CviAII	CATG	1 cut(s)	259
CviQI	GTAC	2 cut(s)	210, 641
DdeI	CTNAG	3 cut(s)	313, 332, 644
DpnI	GATC	4 cut(s)	9, 20, 167, 287
DpnII	GATC	4 cut(s)	7, 18, 165, 285
DraIII	CACNNNGTG	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	854
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
Eco147I	AGGCCT	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	3 cut(s)	364, 491, 662
Eco57I	CTGAAG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	467
EcoNI	CCTNNNNNAGG	1 cut(s)	897
EcoRII	CCWGG	2 cut(s)	424, 658
EcoRV	GATATC	1 cut(s)	31
FaeI	CATG	1 cut(s)	262
FaiI	YATR	9 cut(s)	159, 164, 260, 279, 308, 374, 502, 530, 945
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	3 cut(s)	504, 562, 683
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	859
FbaI	TGATCA	2 cut(s)	18, 165
Fnu4HI	GCNGC	8 cut(s)	105, 267, 822, 825, 828, 831, 834, 854
Fsp4HI	GCNGC	8 cut(s)	105, 267, 822, 825, 828, 831, 834, 854
FspBI	CTAG	3 cut(s)	135, 341, 894
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	8 cut(s)	105, 267, 822, 825, 828, 831, 834, 854
GsuI	CTGGAG	2 cut(s)	588, 837
HaeIII	GGCC	2 cut(s)	378, 856
HapII	CCGG	5 cut(s)	201, 240, 494, 516, 638
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	656
HindII	GTYRAC	1 cut(s)	656
HindIII	AAGCTT	2 cut(s)	110, 773
HinfI	GANTC	6 cut(s)	150, 324, 472, 509, 673, 932
HpaII	CCGG	5 cut(s)	201, 240, 494, 516, 638
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	2 cut(s)	656, 665
Hpy188I	TCNGA	3 cut(s)	69, 333, 364
Hpy188III	TCNNGA	2 cut(s)	22, 816
Hpy8I	GTNNAC	2 cut(s)	656, 665
HpyAV	CCTTC	2 cut(s)	309, 785
HpyCH4III	ACNGT	1 cut(s)	927
HpyCH4IV	ACGT	1 cut(s)	907
HpyCH4V	TGCA	6 cut(s)	176, 258, 269, 347, 461, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 344, 827, 830, 833
HpyF3I	CTNAG	3 cut(s)	313, 332, 644
HpySE526I	ACGT	1 cut(s)	907
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	2 cut(s)	18, 165
Kzo9I	GATC	4 cut(s)	7, 18, 165, 285
LmnI	GCTCC	4 cut(s)	124, 263, 589, 818
Lsp1109I	GCAGC	5 cut(s)	91, 253, 820, 836, 839
LweI	GCATC	2 cut(s)	163, 285
MabI	ACCWGGT	1 cut(s)	658
MaeI	CTAG	3 cut(s)	135, 341, 894
MaeII	ACGT	1 cut(s)	907
MaeIII	GTNAC	3 cut(s)	47, 233, 431
MalI	GATC	4 cut(s)	9, 20, 167, 287
MboI	GATC	4 cut(s)	7, 18, 165, 285
MboII	GAAGA	4 cut(s)	17, 191, 333, 764
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	6 cut(s)	38, 446, 681, 706, 732, 955
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	8 cut(s)	266, 327, 593, 644, 748, 794, 823, 893
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	4 cut(s)	381, 413, 716, 839
MslI	CAYNNNNRTG	2 cut(s)	56, 881
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	5 cut(s)	201, 240, 494, 516, 638
MspR9I	CCNGG	5 cut(s)	201, 241, 426, 517, 660
MvaI	CCWGG	2 cut(s)	426, 660
MvnI	CGCG	2 cut(s)	155, 866
MwoI	GCNNNNNNNGC	5 cut(s)	101, 344, 827, 830, 833
NciI	CCSGG	3 cut(s)	201, 241, 517
NdeII	GATC	4 cut(s)	7, 18, 165, 285
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	4 cut(s)	126, 492, 624, 820
PaqCI	CACCTGC	1 cut(s)	737
PceI	AGGCCT	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	6 cut(s)	150, 324, 472, 509, 673, 932
PflMI	CCANNNNNTGG	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	8 cut(s)	106, 268, 823, 826, 829, 832, 835, 855
Psp1406I	AACGTT	1 cut(s)	907
Psp6I	CCWGG	2 cut(s)	424, 658
PspGI	CCWGG	2 cut(s)	424, 658
PspN4I	GGNNCC	4 cut(s)	126, 492, 624, 820
PspPI	GGNCC	3 cut(s)	364, 491, 662
PstNI	CAGNNNCTG	1 cut(s)	833
RsaI	GTAC	2 cut(s)	211, 642
RsaNI	GTAC	2 cut(s)	210, 641
RseI	CAYNNNNRTG	2 cut(s)	56, 881
SaqAI	TTAA	4 cut(s)	381, 413, 716, 839
SatI	GCNGC	8 cut(s)	105, 267, 822, 825, 828, 831, 834, 854
Sau3AI	GATC	4 cut(s)	7, 18, 165, 285
Sau96I	GGNCC	3 cut(s)	364, 491, 662
ScrFI	CCNGG	5 cut(s)	201, 241, 426, 517, 660
SduI	GDGCHC	1 cut(s)	340
SexAI	ACCWGGT	1 cut(s)	658
SfaNI	GCATC	2 cut(s)	163, 285
SinI	GGWCC	3 cut(s)	364, 491, 662
SmiMI	CAYNNNNRTG	2 cut(s)	56, 881
SmlI	CTYRAG	2 cut(s)	113, 584
SmoI	CTYRAG	2 cut(s)	113, 584
Sse9I	AATT	6 cut(s)	38, 446, 681, 706, 732, 955
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	5 cut(s)	648, 822, 830, 853, 866
SspMI	CTAG	3 cut(s)	135, 341, 894
StuI	AGGCCT	1 cut(s)	378
StyD4I	CCNGG	5 cut(s)	199, 239, 424, 515, 658
TaaI	ACNGT	1 cut(s)	927
TaiI	ACGT	1 cut(s)	910
TaqI	TCGA	3 cut(s)	917, 930, 935
TasI	AATT	6 cut(s)	38, 446, 681, 706, 732, 955
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	3 cut(s)	824, 833, 856
TfiI	GAWTC	6 cut(s)	150, 324, 472, 509, 673, 932
Tru1I	TTAA	4 cut(s)	381, 413, 716, 839
Tru9I	TTAA	4 cut(s)	381, 413, 716, 839
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	5 cut(s)	104, 266, 824, 827, 833
TspDTI	ATGAA	4 cut(s)	344, 464, 744, 960
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	364, 491, 662
XagI	CCTNNNNNAGG	1 cut(s)	897
XapI	RAATTY	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	3 cut(s)	135, 341, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.