Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

10029632 .. 10032962

Gene Structure 3331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAAGACCGCGTCTTGATCAAGAACGATGTCACTGAATTGATAGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGGTTGTGTGGCTCGTATTGCTGCCAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGATAGAATCGCATATAGTATGATCAAAGATGCTGAAGACAAAGGATTGATTACTCCGGGAAAGAGTACATTGATTGAGGCAACGGGTGGTAACACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAAGTGATCCTTTTGATGCCTTCAACAATGAGTTTAGAAAGGAGAATCATTCTAAGAGCATTAGGTGCAGAGGTTCATCTCACTGACATTAGCATAGGCATTAAAGGACAGTTGGAGAAAGCTAAAGAGATATTAAGCAAAACTCCCGGTGGTTACATACCACACCAGTTTATTAATCCTGAAAATCCAGAGATTCATTATAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAAGTAGATATCTTAGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTTCTTAAAGAAAAGAACAAAGATATTAAGGTTTGTGTGGTGGAACCTTCCGAAAGTGCGGTACTCAGCGGAGGAAAACCAGGTCCACATTTGATCCAAGGAATAGGCTCTGGTGAAATTCCAGCCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGCTATTGAAACAACCAAGCTTCTTGCTATCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGCCTCAGCTGCGGCTGCGTTAAAGGTTGCAAAGCGGCCTGAAAACGTAGGGAAACTCATTGTGGTTATTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGTCAGATATGAAGCTGAGAATTTGCCAGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

323

Amino Acids

34.33

Weight (kDa)

5.62

Isoelectric Point (pI)

23.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 298	7e-72	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	5 cut(s)	10, 638, 648, 830, 853
AclI	AACGTT	1 cut(s)	907
AclWI	GGATC	2 cut(s)	280, 667
AcsI	RAATTY	2 cut(s)	696, 955
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	211, 642
AfiI	CCNNNNNNNGG	2 cut(s)	261, 899
AflII	CTTAAG	1 cut(s)	715
AgsI	TTSAA	5 cut(s)	270, 303, 740, 764, 968
AjnI	CCWGG	1 cut(s)	658
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	6 cut(s)	112, 401, 758, 775, 827, 950
AluI	AGCT	6 cut(s)	112, 401, 758, 775, 827, 950
AlwI	GGATC	2 cut(s)	280, 667
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	1 cut(s)	854
ApeKI	GCWGC	3 cut(s)	104, 827, 833
ApoI	RAATTY	2 cut(s)	696, 955
AseI	ATTAAT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	491, 662
AsuC2I	CCSGG	3 cut(s)	201, 241, 426
AsuHPI	GGTGA	2 cut(s)	704, 761
AvaII	GGWCC	2 cut(s)	491, 662
BbsI	GAAGAC	2 cut(s)	12, 186
BbvCI	CCTCAGC	1 cut(s)	823
BbvI	GCAGC	3 cut(s)	91, 814, 820
BccI	CCATC	2 cut(s)	77, 115
BciT130I	CCWGG	1 cut(s)	660
BclI	TGATCA	2 cut(s)	18, 165
BcnI	CCSGG	3 cut(s)	201, 241, 426
BfaI	CTAG	2 cut(s)	135, 894
BfrI	CTTAAG	1 cut(s)	715
BisI	GCNGC	5 cut(s)	105, 828, 831, 834, 854
BlsI	GCNGC	5 cut(s)	106, 829, 832, 835, 855
Bme1390I	CCNGG	4 cut(s)	201, 241, 426, 660
Bme18I	GGWCC	2 cut(s)	491, 662
BmgT120I	GGNCC	2 cut(s)	491, 662
BmiI	GGNNCC	4 cut(s)	126, 492, 624, 820
BmrFI	CCNGG	4 cut(s)	201, 241, 426, 660
BmsI	GCATC	4 cut(s)	147, 163, 267, 285
BpiI	GAAGAC	2 cut(s)	12, 186
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	823
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	3 cut(s)	201, 241, 426
BsaJI	CCNNGG	2 cut(s)	486, 676
BsaWI	WCCGGW	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 899
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	5 cut(s)	445, 556, 571, 751, 962
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	486, 676
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	261, 899
BseMII	CTCAG	3 cut(s)	658, 837, 942
BseNI	ACTGG	5 cut(s)	445, 556, 571, 751, 962
BseRI	GAGGAG	1 cut(s)	915
BseXI	GCAGC	3 cut(s)	91, 814, 820
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	856
BsiSI	CCGG	5 cut(s)	200, 240, 426, 494, 540
BslI	CCNNNNNNNGG	2 cut(s)	261, 899
BsnI	GGCC	1 cut(s)	856
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	18, 165, 285, 672
BspACI	CCGC	5 cut(s)	10, 638, 648, 830, 853
BspANI	GGCC	1 cut(s)	856
BspCNI	CTCAG	3 cut(s)	657, 836, 943
BspEI	TCCGGA	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	4 cut(s)	126, 492, 624, 820
BspPI	GGATC	2 cut(s)	280, 667
BspTI	CTTAAG	1 cut(s)	715
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	5 cut(s)	445, 556, 571, 751, 962
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	486, 676
BssMI	GATC	4 cut(s)	18, 165, 285, 672
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	2 cut(s)	390, 562
BstAFI	CTTAAG	1 cut(s)	715
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	5 cut(s)	332, 532, 644, 823, 951
BstDSI	CCRYGG	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	897
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	4 cut(s)	21, 168, 288, 675
BstMBI	GATC	4 cut(s)	18, 165, 285, 672
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 344, 827, 833
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	4 cut(s)	199, 239, 424, 658
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	91, 814, 820
BstV2I	GAAGAC	2 cut(s)	12, 186
BsuRI	GGCC	1 cut(s)	856
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	33, 360
Cac8I	GCNNGC	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	491, 662
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	2 cut(s)	210, 641
CviQI	GTAC	2 cut(s)	210, 641
DdeI	CTNAG	5 cut(s)	332, 532, 644, 823, 951
DpnI	GATC	4 cut(s)	20, 167, 287, 674
DpnII	GATC	4 cut(s)	18, 165, 285, 672
Eco130I	CCWWGG	1 cut(s)	676
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	491, 662
Eco57I	CTGAAG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	897
EcoRII	CCWGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	676
FaiI	YATR	8 cut(s)	157, 159, 164, 279, 374, 437, 480, 945
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FbaI	TGATCA	2 cut(s)	18, 165
Fnu4HI	GCNGC	5 cut(s)	105, 828, 831, 834, 854
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	5 cut(s)	105, 828, 831, 834, 854
FspBI	CTAG	2 cut(s)	135, 894
GluI	GCNGC	5 cut(s)	105, 828, 831, 834, 854
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	1 cut(s)	856
HapII	CCGG	5 cut(s)	200, 240, 426, 494, 540
HindIII	AAGCTT	2 cut(s)	110, 773
HinfI	GANTC	5 cut(s)	150, 324, 472, 509, 932
HpaII	CCGG	5 cut(s)	200, 240, 426, 494, 540
HphI	GGTGA	2 cut(s)	704, 761
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	2 cut(s)	631, 941
Hpy188III	TCNNGA	7 cut(s)	16, 22, 270, 458, 467, 494, 816
Hpy8I	GTNNAC	1 cut(s)	665
HpyAV	CCTTC	3 cut(s)	309, 636, 785
HpyCH4III	ACNGT	2 cut(s)	390, 562
HpyCH4IV	ACGT	2 cut(s)	864, 907
HpyCH4V	TGCA	2 cut(s)	347, 848
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 344, 827, 833
HpyF3I	CTNAG	5 cut(s)	332, 532, 644, 823, 951
HpySE526I	ACGT	2 cut(s)	864, 907
Kpn2I	TCCGGA	1 cut(s)	493
Ksp22I	TGATCA	2 cut(s)	18, 165
Kzo9I	GATC	4 cut(s)	18, 165, 285, 672
LmnI	GCTCC	2 cut(s)	124, 818
Lsp1109I	GCAGC	3 cut(s)	91, 814, 820
LweI	GCATC	4 cut(s)	147, 163, 267, 285
MabI	ACCWGGT	1 cut(s)	658
MaeI	CTAG	2 cut(s)	135, 894
MaeII	ACGT	2 cut(s)	864, 907
MaeIII	GTNAC	6 cut(s)	31, 47, 233, 431, 562, 742
MalI	GATC	4 cut(s)	20, 167, 287, 674
MboI	GATC	4 cut(s)	18, 165, 285, 672
MboII	GAAGA	2 cut(s)	17, 191
MluCI	AATT	6 cut(s)	38, 75, 696, 706, 923, 955
MlyI	GAGTC	1 cut(s)	941
MmeI	TCCRAC	3 cut(s)	372, 526, 784
MnlI	CCTC	8 cut(s)	214, 266, 343, 644, 745, 823, 832, 893
MroI	TCCGGA	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	7 cut(s)	381, 413, 453, 585, 606, 716, 839
MslI	CAYNNNNRTG	2 cut(s)	56, 740
MspA1I	CMGCKG	2 cut(s)	648, 827
MspCI	CTTAAG	1 cut(s)	715
MspI	CCGG	5 cut(s)	200, 240, 426, 494, 540
MspR9I	CCNGG	4 cut(s)	201, 241, 426, 660
MvaI	CCWGG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	101, 344, 827, 833
NciI	CCSGG	3 cut(s)	201, 241, 426
NdeII	GATC	4 cut(s)	18, 165, 285, 672
NlaIV	GGNNCC	4 cut(s)	126, 492, 624, 820
NmuCI	GTSAC	2 cut(s)	31, 742
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	4 cut(s)	150, 324, 472, 509
PflFI	GACNNNGTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	5 cut(s)	106, 829, 832, 835, 855
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
PshBI	ATTAAT	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	907
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	4 cut(s)	126, 492, 624, 820
PspPI	GGNCC	2 cut(s)	491, 662
PsyI	GACNNNGTC	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	2 cut(s)	211, 642
RsaNI	GTAC	2 cut(s)	210, 641
RseI	CAYNNNNRTG	2 cut(s)	56, 740
SaqAI	TTAA	7 cut(s)	381, 413, 453, 585, 606, 716, 839
SatI	GCNGC	5 cut(s)	105, 828, 831, 834, 854
Sau3AI	GATC	4 cut(s)	18, 165, 285, 672
Sau96I	GGNCC	2 cut(s)	491, 662
SchI	GAGTC	1 cut(s)	941
ScrFI	CCNGG	4 cut(s)	201, 241, 426, 660
SexAI	ACCWGGT	1 cut(s)	658
SfaNI	GCATC	4 cut(s)	147, 163, 267, 285
SgrAI	CRCCGGYG	1 cut(s)	539
SinI	GGWCC	2 cut(s)	491, 662
SmiMI	CAYNNNNRTG	2 cut(s)	56, 740
SmlI	CTYRAG	2 cut(s)	113, 715
SmoI	CTYRAG	2 cut(s)	113, 715
Sse9I	AATT	6 cut(s)	38, 75, 696, 706, 923, 955
SsiI	CCGC	5 cut(s)	10, 638, 648, 830, 853
SspMI	CTAG	2 cut(s)	135, 894
StyD4I	CCNGG	4 cut(s)	199, 239, 424, 658
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	390, 562
TaiI	ACGT	2 cut(s)	867, 910
TaqI	TCGA	2 cut(s)	917, 930
TasI	AATT	6 cut(s)	38, 75, 696, 706, 923, 955
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	2 cut(s)	833, 856
TfiI	GAWTC	4 cut(s)	150, 324, 472, 509
Tru1I	TTAA	7 cut(s)	381, 413, 453, 585, 606, 716, 839
Tru9I	TTAA	7 cut(s)	381, 413, 453, 585, 606, 716, 839
TscAI	CASTG	2 cut(s)	40, 367
TseFI	GTSAC	2 cut(s)	31, 742
TseI	GCWGC	3 cut(s)	104, 827, 833
Tsp45I	GTSAC	2 cut(s)	31, 742
TspDTI	ATGAA	4 cut(s)	344, 464, 744, 960
TspRI	CASTG	2 cut(s)	40, 367
Tth111I	GACNNNGTC	1 cut(s)	11
Vha464I	CTTAAG	1 cut(s)	715
VpaK11BI	GGWCC	2 cut(s)	491, 662
VspI	ATTAAT	1 cut(s)	453
XagI	CCTNNNNNAGG	1 cut(s)	897
XapI	RAATTY	2 cut(s)	696, 955
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	2 cut(s)	135, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.