Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010928.1

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

32415 .. 34275

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010928.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtggattatttcaagtttcaataacttaattacttcccttgcatcctctatatgcacaaatactgggctcaagactgttcttattgagcctacaagtggcaacactggcattggattggcattcattgctgctatcaagggttacaagctcaagctaagcatgccagctacaatgagtcttgaaagaagaattgtgctcagagcttttggagctgaagtcttcatcgcagatcctgccaggggctttgagggagcttttgccaaggcagacgagctgctaagtaacacacctaatagctttatgcttcaacaattggaaaaccctgccaacccaaaggttcattatgaaaccactggcccagagatatggagagactcgggagggaaagttgatgtctttgtttcaggaatagggactgggggtactgtaaccggtgcaggaagtttccttaaagagcaaaatccagatattaaggtgtatggtgtagaaccagctgaaagtgcagtattgaatggtggcaaacctgggatgcatctgatccaaggaattggtgctggtttcatacctcaagttctggatgttagcttgctggatgaagttattcaagtatccagtgaggaagcaattgaaactgctaagctgcttgcgctaaaagaaggtcttttggtggggatttcatcaggtgctgcagcagcagcagcaataaagttggcaaagaagcaagaaaatgctggaaaattaatagttgttgtgtttgccagttctggagagcgttatctgtcttctccactcttcgataccattaggcacgaggcagaaaatatgaagtttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

279

Amino Acids

29.44

Weight (kDa)

5.4

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	227, 535
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	98, 242
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	8 cut(s)	15, 22, 185, 311, 514, 608, 632, 836
AjnI	CCWGG	2 cut(s)	239, 526
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	227, 535
AlwNI	CAGNNNCTG	2 cut(s)	236, 689
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	8 cut(s)	131, 277, 643, 689, 692, 695, 698, 701
AseI	ATTAAT	1 cut(s)	743
AsiGI	ACCGGT	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	812
BbsI	GAAGAC	2 cut(s)	214, 777
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	8 cut(s)	118, 264, 630, 676, 704, 707, 710, 713
BciT130I	CCWGG	2 cut(s)	241, 528
BciVI	GTATCC	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	690
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	8 cut(s)	132, 278, 644, 690, 693, 696, 699, 702
BlpI	GCTNAGC	2 cut(s)	158, 639
BlsI	GCNGC	8 cut(s)	133, 279, 645, 691, 694, 697, 700, 703
Bme1390I	CCNGG	2 cut(s)	241, 528
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	2 cut(s)	241, 528
BmrI	ACTGGG	2 cut(s)	75, 429
BmsI	GCATC	3 cut(s)	53, 522, 544
BmuI	ACTGGG	2 cut(s)	75, 429
BpiI	GAAGAC	2 cut(s)	214, 777
BpmI	CTGGAG	1 cut(s)	789
Bpu1102I	GCTNAGC	2 cut(s)	158, 639
BpuEI	CTTGAG	3 cut(s)	56, 137, 555
BsaJI	CCNNGG	4 cut(s)	240, 264, 527, 544
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	4 cut(s)	204, 234, 375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 242
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	6 cut(s)	70, 112, 361, 424, 615, 762
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	241, 528
BseDI	CCNNGG	4 cut(s)	240, 264, 527, 544
BseGI	GGATG	4 cut(s)	44, 537, 586, 601
BseLI	CCNNNNNNNGG	2 cut(s)	98, 242
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	214
BseNI	ACTGG	6 cut(s)	70, 112, 361, 424, 615, 762
BseXI	GCAGC	8 cut(s)	118, 264, 630, 676, 704, 707, 710, 713
BsgI	GTGCAG	2 cut(s)	459, 525
BshFI	GGCC	1 cut(s)	360
BshTI	ACCGGT	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	98, 242
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	72, 201
Bsp143I	GATC	2 cut(s)	232, 540
Bsp1720I	GCTNAGC	2 cut(s)	158, 639
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	2 cut(s)	227, 535
BsrDI	GCAATG	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	6 cut(s)	70, 112, 361, 424, 615, 762
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	4 cut(s)	240, 264, 527, 544
BssMI	GATC	2 cut(s)	232, 540
BssSI	CACGAG	1 cut(s)	812
BssT1I	CCWWGG	2 cut(s)	264, 544
Bst2BI	CACGAG	1 cut(s)	812
Bst2UI	CCWGG	2 cut(s)	241, 528
Bst4CI	ACNGT	2 cut(s)	79, 430
Bst6I	CTCTTC	1 cut(s)	800
BstAPI	GCANNNNNTGC	2 cut(s)	128, 236
BstC8I	GCNNGC	4 cut(s)	164, 168, 590, 648
BstDEI	CTNAG	4 cut(s)	158, 200, 281, 639
BstF5I	GGATG	4 cut(s)	44, 537, 586, 601
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	2 cut(s)	235, 543
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	2 cut(s)	232, 540
BstNI	CCWGG	2 cut(s)	241, 528
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	239, 526
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	8 cut(s)	118, 264, 630, 676, 704, 707, 710, 713
BstV2I	GAAGAC	2 cut(s)	214, 777
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	2 cut(s)	369, 551
BstYI	RGATCY	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	4 cut(s)	44, 537, 586, 601
BtsIMutI	CAGTG	3 cut(s)	105, 354, 622
Cac8I	GCNNGC	4 cut(s)	164, 168, 590, 648
CaiI	CAGNNNCTG	2 cut(s)	236, 689
CfoI	GCGC	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	426
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	4 cut(s)	158, 200, 281, 639
DpnI	GATC	2 cut(s)	234, 542
DpnII	GATC	2 cut(s)	232, 540
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco130I	CCWWGG	2 cut(s)	264, 544
Eco24I	GRGCYC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	239, 526
EcoT14I	CCWWGG	2 cut(s)	264, 544
EcoT22I	ATGCAT	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	264, 544
FaeI	CATG	1 cut(s)	166
FaiI	YATR	9 cut(s)	53, 55, 164, 305, 348, 370, 483, 566, 827
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	8 cut(s)	132, 278, 644, 690, 693, 696, 699, 702
FokI	GGATG	4 cut(s)	31, 544, 593, 608
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	8 cut(s)	132, 278, 644, 690, 693, 696, 699, 702
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	8 cut(s)	132, 278, 644, 690, 693, 696, 699, 702
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HinfI	GANTC	2 cut(s)	178, 377
HpaII	CCGG	1 cut(s)	435
Hpy188I	TCNGA	2 cut(s)	203, 540
Hpy188III	TCNNGA	7 cut(s)	73, 182, 381, 408, 467, 578, 768
HpyAV	CCTTC	1 cut(s)	653
HpyCH4III	ACNGT	2 cut(s)	79, 430
HpyCH4V	TGCA	6 cut(s)	44, 57, 440, 506, 535, 692
HpyF3I	CTNAG	4 cut(s)	158, 200, 281, 639
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	650
Kzo9I	GATC	2 cut(s)	232, 540
LmnI	GCTCC	2 cut(s)	212, 254
Lsp1109I	GCAGC	8 cut(s)	118, 264, 630, 676, 704, 707, 710, 713
LweI	GCATC	3 cut(s)	53, 522, 544
MaeIII	GTNAC	3 cut(s)	143, 284, 430
MalI	GATC	2 cut(s)	234, 542
MboI	GATC	2 cut(s)	232, 540
MboII	GAAGA	4 cut(s)	201, 214, 777, 787
MfeI	CAATTG	2 cut(s)	314, 627
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	72, 201
MluCI	AATT	6 cut(s)	30, 192, 314, 549, 627, 740
MlyI	GAGTC	2 cut(s)	187, 371
MnlI	CCTC	6 cut(s)	58, 244, 377, 579, 613, 808
Mph1103I	ATGCAT	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	4 cut(s)	29, 453, 474, 743
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	241, 528
MunI	CAATTG	2 cut(s)	314, 627
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	2 cut(s)	241, 528
NdeII	GATC	2 cut(s)	232, 540
NlaIII	CATG	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	603
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	8 cut(s)	133, 279, 645, 691, 694, 697, 700, 703
PleI	GAGTC	2 cut(s)	186, 371
PpsI	GAGTC	2 cut(s)	186, 371
PshBI	ATTAAT	1 cut(s)	743
Psp6I	CCWGG	2 cut(s)	239, 526
PspGI	CCWGG	2 cut(s)	239, 526
PspPI	GGNCC	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	694
PstNI	CAGNNNCTG	2 cut(s)	236, 689
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	29, 453, 474, 743
SatI	GCNGC	8 cut(s)	132, 278, 644, 690, 693, 696, 699, 702
Sau3AI	GATC	2 cut(s)	232, 540
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	2 cut(s)	187, 371
ScrFI	CCNGG	2 cut(s)	241, 528
SduI	GDGCHC	2 cut(s)	72, 201
SfaNI	GCATC	3 cut(s)	53, 522, 544
SfcI	CTRYAG	1 cut(s)	690
SmlI	CTYRAG	3 cut(s)	71, 152, 570
SmoI	CTYRAG	3 cut(s)	71, 152, 570
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	6 cut(s)	30, 192, 314, 549, 627, 740
StyD4I	CCNGG	2 cut(s)	239, 526
StyI	CCWWGG	2 cut(s)	264, 544
TaaI	ACNGT	2 cut(s)	79, 430
TaqI	TCGA	1 cut(s)	798
TasI	AATT	6 cut(s)	30, 192, 314, 549, 627, 740
Tru1I	TTAA	4 cut(s)	29, 453, 474, 743
Tru9I	TTAA	4 cut(s)	29, 453, 474, 743
TscAI	CASTG	3 cut(s)	112, 361, 622
TseI	GCWGC	8 cut(s)	131, 277, 643, 689, 692, 695, 698, 701
TspDTI	ATGAA	7 cut(s)	115, 214, 332, 363, 553, 612, 669
TspRI	CASTG	3 cut(s)	112, 361, 622
VspI	ATTAAT	1 cut(s)	743
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	603
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.