Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010928.1

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

25232 .. 27026

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010928.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgccatctatagtgagtcttgaaagaagaattgtgctccgagcttttggagctgaggtcttcatcacagatcctgctaagggatttaagggagttcttgctaaggcagatgagctgctaagcaacacacctaatagctttatgcttcaacagtttgaaaaccctgccaatccagaggttcattatgaaaccactggcccagagatatggagagactcgggagggaaagttgatgtcttggtttcagggatagggactgggggtactgtaaccggtgcagggagtttcctcaaagagcaaaatccagatatcaaggtgtatggtgtagaaccagctgaaagtgcaatattgaatggcggcaaacctgggatgcatctgatccaaggaattggtgctggtttcatacctcaagttctggatgttagcttgctggatgaagttattcaagtgtccagtgaggaagcaattgaaactgctaagctgcttgcactaaaagaaggtcttttggtgggaatttcatctggtgctgctgcagcagcagcaataaagttggcaaagaaggaagaaaatgctggaaaactgatagttgttgtgttcgccagttctggagagcgctacctgtcttcgccactcttcgataccattaggcatgaggcagaaaatatgaagtttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

225

Amino Acids

23.79

Weight (kDa)

4.96

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	2 cut(s)	65, 373
AcsI	RAATTY	1 cut(s)	513
AfaI	GTAC	1 cut(s)	265
AfeI	AGCGCT	1 cut(s)	614
AfiI	CCNNNNNNNGG	2 cut(s)	80, 279
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	7 cut(s)	23, 149, 158, 352, 446, 470, 674
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	7 cut(s)	44, 53, 115, 138, 335, 426, 481
AluI	AGCT	7 cut(s)	44, 53, 115, 138, 335, 426, 481
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	65, 373
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	217
Aor51HI	AGCGCT	1 cut(s)	614
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	7 cut(s)	115, 481, 527, 530, 533, 536, 539
ApoI	RAATTY	1 cut(s)	513
AsiGI	ACCGGT	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	217
BbsI	GAAGAC	2 cut(s)	52, 615
Bbv12I	GWGCWC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	7 cut(s)	102, 468, 514, 517, 545, 548, 551
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	207
BfmI	CTRYAG	2 cut(s)	9, 531
BfoI	RGCGCY	1 cut(s)	616
BisI	GCNGC	8 cut(s)	116, 358, 482, 528, 531, 534, 537, 540
BlpI	GCTNAGC	2 cut(s)	119, 477
BlsI	GCNGC	8 cut(s)	117, 359, 483, 529, 532, 535, 538, 541
Bme1390I	CCNGG	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	2 cut(s)	360, 382
BmuI	ACTGGG	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	52, 615
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	3 cut(s)	54, 78, 102
Bpu1102I	GCTNAGC	2 cut(s)	119, 477
BpuEI	CTTGAG	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	365, 382
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 279
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	4 cut(s)	199, 262, 453, 600
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	365, 382
BseGI	GGATG	3 cut(s)	375, 424, 439
BseLI	CCNNNNNNNGG	2 cut(s)	80, 279
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	4 cut(s)	199, 262, 453, 600
BseXI	GCAGC	7 cut(s)	102, 468, 514, 517, 545, 548, 551
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	80, 279
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	70, 378
Bsp1720I	GCTNAGC	2 cut(s)	119, 477
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	535
BspPI	GGATC	2 cut(s)	65, 373
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	4 cut(s)	199, 262, 453, 600
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	365, 382
BssMI	GATC	2 cut(s)	70, 378
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	153, 268
Bst6I	CTCTTC	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	428, 486
BstDEI	CTNAG	5 cut(s)	54, 78, 102, 119, 477
BstF5I	GGATG	3 cut(s)	375, 424, 439
BstH2I	RGCGCY	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	615
BstKTI	GATC	2 cut(s)	73, 381
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	2 cut(s)	70, 378
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 341, 533, 536, 539
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	9, 531
BstV1I	GCAGC	7 cut(s)	102, 468, 514, 517, 545, 548, 551
BstV2I	GAAGAC	2 cut(s)	52, 615
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	2 cut(s)	207, 389
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	375, 424, 439
BtsIMutI	CAGTG	2 cut(s)	192, 460
Cac8I	GCNNGC	2 cut(s)	428, 486
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	615
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	264
CspAI	ACCGGT	1 cut(s)	272
CviAII	CATG	1 cut(s)	650
CviJI	RGCY	8 cut(s)	44, 53, 115, 138, 198, 335, 426, 481
CviKI_1	RGCY	8 cut(s)	44, 53, 115, 138, 198, 335, 426, 481
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	5 cut(s)	54, 78, 102, 119, 477
DpnI	GATC	2 cut(s)	72, 380
DpnII	GATC	2 cut(s)	70, 378
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Eco130I	CCWWGG	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	310
Eco47III	AGCGCT	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	1 cut(s)	653
FaiI	YATR	8 cut(s)	11, 143, 186, 208, 321, 404, 651, 665
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	649
Fnu4HI	GCNGC	8 cut(s)	116, 358, 482, 528, 531, 534, 537, 540
FokI	GGATG	3 cut(s)	382, 431, 446
Fsp4HI	GCNGC	8 cut(s)	116, 358, 482, 528, 531, 534, 537, 540
GlaI	GCGC	1 cut(s)	614
GluI	GCNGC	8 cut(s)	116, 358, 482, 528, 531, 534, 537, 540
GsuI	CTGGAG	1 cut(s)	627
HaeII	RGCGCY	1 cut(s)	616
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	615
Hin1II	CATG	1 cut(s)	653
Hin6I	GCGC	1 cut(s)	613
HinP1I	GCGC	1 cut(s)	613
HinfI	GANTC	2 cut(s)	16, 215
HpaII	CCGG	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	41, 378
Hpy188III	TCNNGA	6 cut(s)	20, 173, 219, 305, 416, 606
HpyAV	CCTTC	2 cut(s)	491, 553
HpyCH4III	ACNGT	2 cut(s)	153, 268
HpyCH4V	TGCA	5 cut(s)	278, 344, 373, 488, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 341, 533, 536, 539
HpyF3I	CTNAG	5 cut(s)	54, 78, 102, 119, 477
Hsp92II	CATG	1 cut(s)	653
HspAI	GCGC	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	70, 378
LmnI	GCTCC	2 cut(s)	42, 50
Lsp1109I	GCAGC	7 cut(s)	102, 468, 514, 517, 545, 548, 551
LweI	GCATC	2 cut(s)	360, 382
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	72, 380
MboI	GATC	2 cut(s)	70, 378
MboII	GAAGA	5 cut(s)	39, 52, 575, 615, 625
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	4 cut(s)	30, 387, 465, 513
MlyI	GAGTC	2 cut(s)	25, 209
MnlI	CCTC	7 cut(s)	49, 169, 215, 299, 417, 451, 646
Mph1103I	ATGCAT	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	5 cut(s)	50, 341, 533, 536, 539
NdeII	GATC	2 cut(s)	70, 378
NlaIII	CATG	1 cut(s)	653
NsiI	ATGCAT	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	441
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	8 cut(s)	117, 359, 483, 529, 532, 535, 538, 541
PleI	GAGTC	2 cut(s)	24, 209
PpsI	GAGTC	2 cut(s)	24, 209
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	8 cut(s)	116, 358, 482, 528, 531, 534, 537, 540
Sau3AI	GATC	2 cut(s)	70, 378
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	2 cut(s)	25, 209
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	360, 382
SfcI	CTRYAG	2 cut(s)	9, 531
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	30, 387, 465, 513
SsiI	CCGC	1 cut(s)	357
SspI	AATATT	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	153, 268
TaqI	TCGA	1 cut(s)	636
TasI	AATT	4 cut(s)	30, 387, 465, 513
TauI	GCSGC	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	2 cut(s)	199, 460
TseI	GCWGC	7 cut(s)	115, 481, 527, 530, 533, 536, 539
TspDTI	ATGAA	6 cut(s)	52, 170, 201, 391, 450, 507
TspRI	CASTG	2 cut(s)	199, 460
XapI	RAATTY	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.