Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

49696174 .. 49700374

Gene Structure 4201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGGGCCAATGTGCAATCAAGAAAGATGTGACTGAATTAATCGGAAATACCCCAATGGTATACCTGAATAATGTCGTGGAAGGTTGTGTAGCTCGAATTGCTGCCAAGCTCGAGATGATGGAACCCTGCTGCAGTGTGAAAGATAGGATTGCATATAGTATGATCAAGGACGCAGAGGATAAAGCTTTTGGAGCTGAGGTTTACCTCACAGATTGGGCCAAAGGCTTTCAGGGAAGTCTTGATAAGGTTGAGGAGTTGCTACGTGACACACCTAATAGTCATGCACTTCAGCAATTTGAAAACCCTGCCAATCCAAAGATTCATTATGAAACCACCGGCCCGGAGATATGGAGGGACTCGGCAGGGAAAGTTGATATCTTGGTTTCGGGGATTGGAACTGGTGGTACAGTAACTGGTGTAGGGAAGTTTCTTAAAGAGCAAAATCCAGAGATCAAGGTTGAATTTTGTGTATTGTATGTTTACGGTGTAGAACCAATTGAGAGTGCAGTCTTGAATGGTGGTCCACCTGGGAAGCATCTGATCCAAGGACTTGGTGCCGGCATCATACCTCAAGTGCTCGATGTTAACCTGCCGGATAAAGTTATTACAGTATCCAGTGAGGAATCTATCGAGACTGCTAAGCTGCTTGCCCTAAAAGAAGGTCTTTTGGTGGGGATCTCATCTGGTGCTGCAGCAGCAGTAGCAATAAAGTTGGCAAAGAAGCAGGAAAATGCTGGAAAACTAATAGTTGTCGTGTTCCCCAGTTTCGGAGAGCGGTATCTGTCTTCTCCACTTTTTGATACCATTAGGCATGAGGCAGAAAAAATGACGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

279

Amino Acids

30.08

Weight (kDa)

5.11

Isoelectric Point (pI)

22.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 61	2e-08	Pyridoxal-phosphate dependent enzyme
PALP	PF00291	59 - 255	3.7e-38	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	778
AclWI	GGATC	2 cut(s)	538, 686
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	770
AgsI	TTSAA	3 cut(s)	302, 464, 517
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	5 cut(s)	95, 112, 188, 197, 646
AluI	AGCT	5 cut(s)	95, 112, 188, 197, 646
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	2 cut(s)	538, 686
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	3 cut(s)	7, 219, 340
ApeKI	GCWGC	6 cut(s)	104, 132, 646, 692, 695, 698
ApoI	RAATTY	1 cut(s)	464
AseI	ATTAAT	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	7, 219, 341, 524
AsuC2I	CCSGG	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	780
Bbv12I	GWGCWC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	6 cut(s)	91, 119, 633, 679, 707, 710
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	625
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	629
BfmI	CTRYAG	2 cut(s)	133, 693
BfuAI	ACCTGC	1 cut(s)	600
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	6 cut(s)	105, 133, 647, 693, 696, 699
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	6 cut(s)	106, 134, 648, 694, 697, 700
Bme1390I	CCNGG	2 cut(s)	344, 531
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	4 cut(s)	7, 219, 341, 524
BmiI	GGNNCC	2 cut(s)	126, 559
BmrFI	CCNGG	2 cut(s)	344, 531
BmrI	ACTGGG	1 cut(s)	759
BmsI	GCATC	2 cut(s)	547, 573
BmuI	ACTGGG	1 cut(s)	759
BpiI	GAAGAC	1 cut(s)	780
Bpu10I	CCTNAGC	1 cut(s)	198
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	530, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
Bse118I	RCCGGY	2 cut(s)	338, 560
Bse1I	ACTGG	4 cut(s)	406, 421, 618, 765
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	530, 547
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	4 cut(s)	406, 421, 618, 765
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	6 cut(s)	91, 119, 633, 679, 707, 710
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	9, 221, 342
BshNI	GGYRCC	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	4 cut(s)	339, 344, 561, 596
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	9, 221, 342
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	165, 453, 543, 678
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	1 cut(s)	778
BspANI	GGCC	3 cut(s)	9, 221, 342
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	126, 559
BspMAI	CTGCAG	2 cut(s)	137, 697
BspMI	ACCTGC	1 cut(s)	600
BspPI	GGATC	2 cut(s)	538, 686
BspT107I	GGYRCC	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	778
BsrFI	RCCGGY	2 cut(s)	338, 560
BsrI	ACTGG	4 cut(s)	406, 421, 618, 765
BssAI	RCCGGY	2 cut(s)	338, 560
BssECI	CCNNGG	2 cut(s)	530, 547
BssMI	GATC	4 cut(s)	165, 453, 543, 678
BssNAI	GTATAC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	547
Bst1107I	GTATAC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	412, 488, 613
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	562, 651
BstDEI	CTNAG	2 cut(s)	198, 642
BstKTI	GATC	4 cut(s)	168, 456, 546, 681
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	4 cut(s)	165, 453, 543, 678
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 194, 698, 704
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	2 cut(s)	342, 529
BstSFI	CTRYAG	2 cut(s)	133, 693
BstV1I	GCAGC	6 cut(s)	91, 119, 633, 679, 707, 710
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	1 cut(s)	678
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	678
BstZ17I	GTATAC	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	9, 221, 342
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 625
BveI	ACCTGC	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	562, 651
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr10I	RCCGGY	2 cut(s)	338, 560
Cfr13I	GGNCC	4 cut(s)	7, 219, 341, 524
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	2 cut(s)	284, 815
CviJI	RGCY	9 cut(s)	9, 95, 112, 188, 197, 221, 228, 342, 646
CviKI_1	RGCY	9 cut(s)	9, 95, 112, 188, 197, 221, 228, 342, 646
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	198, 642
DpnI	GATC	4 cut(s)	167, 455, 545, 680
DpnII	GATC	4 cut(s)	165, 453, 543, 678
Eco130I	CCWWGG	1 cut(s)	547
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	2 cut(s)	287, 818
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	2 cut(s)	283, 814
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	6 cut(s)	105, 133, 647, 693, 696, 699
Fsp4HI	GCNGC	6 cut(s)	105, 133, 647, 693, 696, 699
GluI	GCNGC	6 cut(s)	105, 133, 647, 693, 696, 699
HaeIII	GGCC	3 cut(s)	9, 221, 342
HapII	CCGG	4 cut(s)	339, 344, 561, 596
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	287, 818
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	3 cut(s)	322, 359, 626
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	4 cut(s)	339, 344, 561, 596
Hpy166II	GTNNAC	5 cut(s)	64, 205, 484, 527, 589
Hpy188I	TCNGA	3 cut(s)	47, 543, 773
Hpy188III	TCNNGA	6 cut(s)	22, 115, 242, 449, 514, 634
Hpy8I	GTNNAC	5 cut(s)	64, 205, 484, 527, 589
HpyAV	CCTTC	2 cut(s)	77, 656
HpyCH4III	ACNGT	3 cut(s)	412, 488, 613
HpyCH4IV	ACGT	2 cut(s)	265, 833
HpyCH4V	TGCA	6 cut(s)	17, 135, 155, 287, 509, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 194, 698, 704
HpyF3I	CTNAG	2 cut(s)	198, 642
HpySE526I	ACGT	2 cut(s)	265, 833
Hsp92II	CATG	2 cut(s)	287, 818
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	165
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	165, 453, 543, 678
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	6 cut(s)	91, 119, 633, 679, 707, 710
LweI	GCATC	2 cut(s)	547, 573
MaeII	ACGT	2 cut(s)	265, 833
MaeIII	GTNAC	3 cut(s)	31, 266, 412
MalI	GATC	4 cut(s)	167, 455, 545, 680
MbiI	CCGCTC	1 cut(s)	778
MboI	GATC	4 cut(s)	165, 453, 543, 678
MboII	GAAGA	1 cut(s)	780
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	5 cut(s)	38, 99, 296, 464, 498
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	172, 193, 218, 247, 348, 582, 616, 811
MroNI	GCCGGC	1 cut(s)	560
MseI	TTAA	3 cut(s)	41, 435, 588
MspI	CCGG	4 cut(s)	339, 344, 561, 596
MspR9I	CCNGG	2 cut(s)	344, 531
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	4 cut(s)	101, 194, 698, 704
NaeI	GCCGGC	1 cut(s)	562
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	4 cut(s)	165, 453, 543, 678
NgoMIV	GCCGGC	1 cut(s)	560
NlaIII	CATG	2 cut(s)	287, 818
NlaIV	GGNNCC	2 cut(s)	126, 559
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	2 cut(s)	31, 266
PaeR7I	CTCGAG	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	322, 626
PkrI	GCNGC	6 cut(s)	106, 134, 648, 694, 697, 700
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	126, 559
PspPI	GGNCC	4 cut(s)	7, 219, 341, 524
PsrI	GAACNNNNNNTAC	2 cut(s)	391, 423
PstI	CTGCAG	2 cut(s)	137, 697
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	41, 435, 588
SatI	GCNGC	6 cut(s)	105, 133, 647, 693, 696, 699
Sau3AI	GATC	4 cut(s)	165, 453, 543, 678
Sau96I	GGNCC	4 cut(s)	7, 219, 341, 524
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	344, 531
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	2 cut(s)	547, 573
SfcI	CTRYAG	2 cut(s)	133, 693
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	524
SlaI	CTCGAG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	113, 573
SmoI	CTYRAG	2 cut(s)	113, 573
Sse9I	AATT	5 cut(s)	38, 99, 296, 464, 498
SsiI	CCGC	1 cut(s)	778
StyD4I	CCNGG	2 cut(s)	342, 529
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	3 cut(s)	412, 488, 613
TaiI	ACGT	2 cut(s)	268, 836
TaqI	TCGA	4 cut(s)	97, 114, 582, 633
TasI	AATT	5 cut(s)	38, 99, 296, 464, 498
TfiI	GAWTC	2 cut(s)	322, 626
Tru1I	TTAA	3 cut(s)	41, 435, 588
Tru9I	TTAA	3 cut(s)	41, 435, 588
TscAI	CASTG	2 cut(s)	142, 625
TseFI	GTSAC	2 cut(s)	31, 266
TseI	GCWGC	6 cut(s)	104, 132, 646, 692, 695, 698
Tsp45I	GTSAC	2 cut(s)	31, 266
TspDTI	ATGAA	2 cut(s)	314, 345
TspRI	CASTG	2 cut(s)	142, 625
VpaK11BI	GGWCC	1 cut(s)	524
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	464
XhoI	CTCGAG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.