Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

49687439 .. 49693057

Gene Structure 5619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGCCCCGCAGCAACATACTTACCTGGACGGGGTCAATGGGCGATCAAGAAGGCTCATGGCCTAGGATCGCATATAGCATGATCAAGGATGCAGAGGATAAAGGTCTAATTACGCCAGGGAAGACTGTTCTTATTGAGCCTACAAGTGGCAACACTGGCATTGGATTGGCATTCATTGCTGCAATCAAGGGTTACAAGCTCAAGCTAAGCATGCCATCTACAATGAGTCTTGAAAGAAGAATTGTCCTCCGAGCTTTTGGAGCTGAGGTCTTTCTCACAGATCCTGCCAAGGGCTTTAAGGGGCTTATTGGTAAGGCGGACGAGCTGCTCAGCAACACACCTAATAGCTTTATGCTTCAACAATTGGAAAACCCTGCCAATCCAAAGGTTCATTATGAAACCACTGGCCCAGAGATATGGAGAGACTCGGGAGGGAAAGTTGATGTCTTTGTTTCAGGAATAGGGACTGGGGGTACTGTAACCGGTGCAGGAAGTTTCCTTAAAGAGCAAAATCCAGATATTAAGGTATGTGGGGTAGAACCAGCTGAAAGTGCAGTATTGAATGGTGGCAAACCTGGGATGCATCTAATCCAAGGAATTGGTGCTGGTTTCATACCTCAAGTTCTGGATGTTATCTTGCTGGATGAAGTTATTCAAGTATCCAGTGAGGAAGCAATTGAAACTGCTAAGCTGCTTGCGCTAAAAGAAGGTCTTTTGGTTGTGTTTGCCAGTTCGGGAGAGCGTTATCTATCTTCTCCACTCTTCGATACCATTAGGCACGAGGCAGAAAATATGAAGTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

269

Amino Acids

28.8

Weight (kDa)

5.07

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	23 - 245	6.4e-52	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	10, 320
AclWI	GGATC	2 cut(s)	77, 278
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	33, 149, 293
AgeI	ACCGGT	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	236, 362, 565, 659, 683
AjnI	CCWGG	3 cut(s)	26, 118, 577
AluBI	AGCT	8 cut(s)	202, 208, 257, 266, 328, 351, 548, 694
AluI	AGCT	8 cut(s)	202, 208, 257, 266, 328, 351, 548, 694
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	2 cut(s)	77, 278
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	2 cut(s)	62, 409
ApeKI	GCWGC	4 cut(s)	12, 182, 328, 694
AsiGI	ACCGGT	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	654
AspA2I	CCTAGG	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	430
AvrII	CCTAGG	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	782
BbsI	GAAGAC	1 cut(s)	131
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	24, 169, 315, 681
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	3 cut(s)	28, 120, 579
BciVI	GTATCC	1 cut(s)	673
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	4 cut(s)	13, 183, 329, 695
BlnI	CCTAGG	1 cut(s)	65
BlpI	GCTNAGC	3 cut(s)	209, 332, 690
BlsI	GCNGC	4 cut(s)	14, 184, 330, 696
Bme1390I	CCNGG	3 cut(s)	28, 120, 579
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	28, 120, 579
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	3 cut(s)	82, 573, 595
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu1102I	GCTNAGC	3 cut(s)	209, 332, 690
BpuEI	CTTGAG	2 cut(s)	188, 606
BsaJI	CCNNGG	5 cut(s)	65, 119, 291, 578, 595
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 426, 456
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 149, 293
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	5 cut(s)	163, 412, 475, 666, 732
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	28, 120, 579
BseDI	CCNNGG	5 cut(s)	65, 119, 291, 578, 595
BseGI	GGATG	4 cut(s)	97, 588, 637, 652
BseLI	CCNNNNNNNGG	3 cut(s)	33, 149, 293
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	258, 346
BseNI	ACTGG	5 cut(s)	163, 412, 475, 666, 732
BseXI	GCAGC	4 cut(s)	24, 169, 315, 681
BsgI	GTGCAG	2 cut(s)	510, 576
BshFI	GGCC	2 cut(s)	64, 411
BshTI	ACCGGT	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	3 cut(s)	33, 149, 293
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	64, 411
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	4 cut(s)	46, 69, 84, 283
Bsp1720I	GCTNAGC	3 cut(s)	209, 332, 690
BspACI	CCGC	2 cut(s)	10, 320
BspANI	GGCC	2 cut(s)	64, 411
BspCNI	CTCAG	2 cut(s)	259, 345
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	77, 278
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	5 cut(s)	163, 412, 475, 666, 732
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	5 cut(s)	65, 119, 291, 578, 595
BssMI	GATC	4 cut(s)	46, 69, 84, 283
BssSI	CACGAG	1 cut(s)	782
BssT1I	CCWWGG	3 cut(s)	65, 291, 595
Bst2BI	CACGAG	1 cut(s)	782
Bst2UI	CCWGG	3 cut(s)	28, 120, 579
Bst4CI	ACNGT	2 cut(s)	130, 481
Bst6I	CTCTTC	1 cut(s)	770
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	215, 699
BstDEI	CTNAG	4 cut(s)	209, 267, 332, 690
BstF5I	GGATG	4 cut(s)	97, 588, 637, 652
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	4 cut(s)	49, 72, 87, 286
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	4 cut(s)	46, 69, 84, 283
BstMWI	GCNNNNNNNGC	6 cut(s)	159, 179, 214, 263, 554, 700
BstNI	CCWGG	3 cut(s)	28, 120, 579
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	26, 118, 577
BstV1I	GCAGC	4 cut(s)	24, 169, 315, 681
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	2 cut(s)	420, 602
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	64, 411
BtsCI	GGATG	4 cut(s)	97, 588, 637, 652
BtsIMutI	CAGTG	3 cut(s)	156, 405, 673
Cac8I	GCNNGC	2 cut(s)	215, 699
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	477
CspAI	ACCGGT	1 cut(s)	485
CviAII	CATG	3 cut(s)	60, 82, 214
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	4 cut(s)	209, 267, 332, 690
DpnI	GATC	4 cut(s)	48, 71, 86, 285
DpnII	GATC	4 cut(s)	46, 69, 84, 283
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	3 cut(s)	65, 291, 595
Eco24I	GRGCYC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	430
EcoRII	CCWGG	3 cut(s)	26, 118, 577
EcoT14I	CCWWGG	3 cut(s)	65, 291, 595
EcoT22I	ATGCAT	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	3 cut(s)	65, 291, 595
FaeI	CATG	3 cut(s)	63, 85, 217
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	3 cut(s)	59, 81, 213
FauI	CCCGC	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	13, 183, 329, 695
FokI	GGATG	4 cut(s)	104, 595, 644, 659
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	13, 183, 329, 695
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	4 cut(s)	13, 183, 329, 695
HaeIII	GGCC	2 cut(s)	64, 411
HapII	CCGG	1 cut(s)	486
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	3 cut(s)	63, 85, 217
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HinfI	GANTC	2 cut(s)	229, 428
HpaII	CCGG	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	7 cut(s)	50, 233, 432, 459, 518, 629, 738
HpyAV	CCTTC	2 cut(s)	47, 704
HpyCH4III	ACNGT	2 cut(s)	130, 481
HpyCH4V	TGCA	5 cut(s)	95, 185, 491, 557, 586
HpyF10VI	GCNNNNNNNGC	6 cut(s)	159, 179, 214, 263, 554, 700
HpyF3I	CTNAG	4 cut(s)	209, 267, 332, 690
Hsp92II	CATG	3 cut(s)	63, 85, 217
HspAI	GCGC	1 cut(s)	701
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	46, 69, 84, 283
LmnI	GCTCC	2 cut(s)	4, 263
Lsp1109I	GCAGC	4 cut(s)	24, 169, 315, 681
LweI	GCATC	3 cut(s)	82, 573, 595
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	194, 481
MalI	GATC	4 cut(s)	48, 71, 86, 285
MboI	GATC	4 cut(s)	46, 69, 84, 283
MboII	GAAGA	4 cut(s)	136, 252, 747, 757
MfeI	CAATTG	2 cut(s)	365, 678
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	5 cut(s)	111, 243, 365, 600, 678
MlyI	GAGTC	2 cut(s)	238, 422
MnlI	CCTC	7 cut(s)	91, 260, 262, 428, 630, 664, 778
Mph1103I	ATGCAT	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	3 cut(s)	300, 504, 525
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	3 cut(s)	28, 120, 579
MunI	CAATTG	2 cut(s)	365, 678
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	3 cut(s)	28, 120, 579
MwoI	GCNNNNNNNGC	6 cut(s)	159, 179, 214, 263, 554, 700
NdeII	GATC	4 cut(s)	46, 69, 84, 283
NlaIII	CATG	3 cut(s)	63, 85, 217
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	588
NspI	RCATGY	1 cut(s)	217
PaeI	GCATGC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	654
PflFI	GACNNNGTC	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	14, 184, 330, 696
PleI	GAGTC	2 cut(s)	237, 422
PpsI	GAGTC	2 cut(s)	237, 422
Psp6I	CCWGG	3 cut(s)	26, 118, 577
PspGI	CCWGG	3 cut(s)	26, 118, 577
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	410
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	300, 504, 525
SatI	GCNGC	4 cut(s)	13, 183, 329, 695
Sau3AI	GATC	4 cut(s)	46, 69, 84, 283
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	2 cut(s)	238, 422
ScrFI	CCNGG	3 cut(s)	28, 120, 579
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	3 cut(s)	82, 573, 595
SmlI	CTYRAG	2 cut(s)	203, 621
SmoI	CTYRAG	2 cut(s)	203, 621
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	5 cut(s)	111, 243, 365, 600, 678
SsiI	CCGC	2 cut(s)	10, 320
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	26, 118, 577
StyI	CCWWGG	3 cut(s)	65, 291, 595
TaaI	ACNGT	2 cut(s)	130, 481
TaqI	TCGA	1 cut(s)	768
TasI	AATT	5 cut(s)	111, 243, 365, 600, 678
Tru1I	TTAA	3 cut(s)	300, 504, 525
Tru9I	TTAA	3 cut(s)	300, 504, 525
TscAI	CASTG	3 cut(s)	163, 412, 673
TseI	GCWGC	4 cut(s)	12, 182, 328, 694
TspDTI	ATGAA	5 cut(s)	166, 383, 414, 604, 663
TspRI	CASTG	3 cut(s)	163, 412, 673
Tth111I	GACNNNGTC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	217
XmaJI	CCTAGG	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.