Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG043400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGTTAATAGGAAATACCCCAATGGTATATCTCAACAATGTCGTGGATGGTTGTGTAGCCAGAATTGCTGCCAAGCTAGAGACAATGGAGCCTTGCTCTAGTGTAAAAGACAGGATCGCTTATAGCATGATCAAGGATGCAGAGGATAAAGGTCTAATTACACCAGGGAAGACTGTTCTTATTGAGCCTACAAGTGGCAACACTGGCATTGGATTGGCATTCATTGCCGCAACCAAGGGCTACAAGCTTAAGCTAAGCATGCCATCTATAGTGAGTCTTGAAAGAAGAATTGTGCTCCGAGCTTTTGGAGCTGAGGTCTTCATCACAGATCCTGCTAAGGGATTTAAGGGAGTTCTTGCTAAGGCAGATGAGCTGCTAAGCAACACACCTAATAGCTTTATGCTTCAACAGTTTGAAAACCCTGCCAATCCAGAGGTTCATTATGAAACCACTGGCCCAGAGATATGGAGAGACTCGGGAGGGAAAGTTGATGTCTTGGTTTCAGGGATAGGGACCGGGGGTACGGTAACCGGTGCAGGGAGTTTCCTCAAAGAGCAAAATCCAGATATCAAGGTGTATGGTGTAGAACCAGCTGAAAGTGCAATATTGAATGGCGGCAAACCAGGGATGCATCTGATCCAAGGAATTGGTGCTGGTTTCATACCTCAAGTTCTGGATGTTAGCTTGCTGGATGAAGTTATTCAAGTATCCAGTGAGGAAGCAATTGAAAATGCTAAGCTGCTTGCACTAAAAGAAGGTCTTTTGGTGGGAATTTCATCTGGTGCTGCTGCAGCAGCAGCAATAAAGTTGGCAAAGAAGCAAGAAAATGCTGGAAAACTGATAGTTGTTGTGTTCGCCAGTTCTGGAGAGCGATACCTGTCTTCGCCACTCTTCGATACCATTAGGCATGAGGCAGAAAATATGAAGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

312

Amino Acids

33.03

Weight (kDa)

5.24

Isoelectric Point (pI)

21.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	3 - 286	4.6e-73	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	231, 618
AclWI	GGATC	3 cut(s)	125, 326, 634
AcsI	RAATTY	1 cut(s)	774
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	3 cut(s)	197, 341, 540
AflII	CTTAAG	1 cut(s)	251
AgeI	ACCGGT	1 cut(s)	533
AgsI	TTSAA	7 cut(s)	284, 410, 419, 613, 707, 731, 935
AjnI	CCWGG	2 cut(s)	166, 625
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	77, 468
AlwI	GGATC	3 cut(s)	125, 326, 634
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	8 cut(s)	71, 376, 742, 788, 791, 794, 797, 800
ApoI	RAATTY	1 cut(s)	774
AsiGI	ACCGGT	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	702
AspS9I	GGNCC	2 cut(s)	458, 516
AsuC2I	CCSGG	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	516
BbsI	GAAGAC	3 cut(s)	179, 313, 876
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	8 cut(s)	58, 363, 729, 775, 778, 806, 809, 812
BccI	CCATC	2 cut(s)	44, 274
BciT130I	CCWGG	2 cut(s)	168, 627
BciVI	GTATCC	1 cut(s)	721
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	77, 468
BfaI	CTAG	2 cut(s)	80, 102
BfmI	CTRYAG	2 cut(s)	270, 792
BfrI	CTTAAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	721
BlpI	GCTNAGC	3 cut(s)	257, 380, 738
Bme1390I	CCNGG	3 cut(s)	168, 520, 627
Bme18I	GGWCC	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	458, 516
BmiI	GGNNCC	2 cut(s)	93, 517
BmrFI	CCNGG	3 cut(s)	168, 520, 627
BmsI	GCATC	3 cut(s)	130, 621, 643
BpiI	GAAGAC	3 cut(s)	179, 313, 876
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	888
Bpu10I	CCTNAGC	3 cut(s)	315, 339, 363
Bpu1102I	GCTNAGC	3 cut(s)	257, 380, 738
BpuEI	CTTGAG	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	520
BsaJI	CCNNGG	5 cut(s)	167, 237, 519, 626, 643
BsaWI	WCCGGW	1 cut(s)	533
BsaXI	ACNNNNNCTCC	4 cut(s)	303, 333, 474, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 341, 540
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	4 cut(s)	211, 460, 714, 861
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	168, 627
BseDI	CCNNGG	5 cut(s)	167, 237, 519, 626, 643
BseGI	GGATG	5 cut(s)	55, 145, 636, 685, 700
BseLI	CCNNNNNNNGG	3 cut(s)	197, 341, 540
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	4 cut(s)	211, 460, 714, 861
BseXI	GCAGC	8 cut(s)	58, 363, 729, 775, 778, 806, 809, 812
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	459
BshTI	ACCGGT	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	519, 534
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	197, 341, 540
BsmAI	GTCTC	2 cut(s)	77, 468
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	459
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	117, 132, 331, 639
Bsp1720I	GCTNAGC	3 cut(s)	257, 380, 738
BspACI	CCGC	2 cut(s)	231, 618
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	93, 517
BspMAI	CTGCAG	1 cut(s)	796
BspPI	GGATC	3 cut(s)	125, 326, 634
BspTI	CTTAAG	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	4 cut(s)	211, 460, 714, 861
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	5 cut(s)	167, 237, 519, 626, 643
BssMI	GATC	4 cut(s)	117, 132, 331, 639
BssT1I	CCWWGG	2 cut(s)	237, 643
Bst2UI	CCWGG	2 cut(s)	168, 627
Bst4CI	ACNGT	3 cut(s)	178, 414, 529
Bst6I	CTCTTC	1 cut(s)	899
BstAFI	CTTAAG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	263, 689, 747
BstDEI	CTNAG	6 cut(s)	257, 315, 339, 363, 380, 738
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	5 cut(s)	55, 145, 636, 685, 700
BstKTI	GATC	4 cut(s)	120, 135, 334, 642
BstMAI	GTCTC	2 cut(s)	77, 468
BstMBI	GATC	4 cut(s)	117, 132, 331, 639
BstMWI	GCNNNNNNNGC	9 cut(s)	68, 207, 227, 262, 311, 602, 794, 797, 800
BstNI	CCWGG	2 cut(s)	168, 627
BstNSI	RCATGY	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	3 cut(s)	166, 518, 625
BstSFI	CTRYAG	2 cut(s)	270, 792
BstV1I	GCAGC	8 cut(s)	58, 363, 729, 775, 778, 806, 809, 812
BstV2I	GAAGAC	3 cut(s)	179, 313, 876
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	2 cut(s)	468, 650
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	459
BtsCI	GGATG	5 cut(s)	55, 145, 636, 685, 700
BtsIMutI	CAGTG	3 cut(s)	204, 453, 721
Cac8I	GCNNGC	3 cut(s)	263, 689, 747
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	2 cut(s)	458, 516
Csp6I	GTAC	1 cut(s)	525
CspAI	ACCGGT	1 cut(s)	533
CviAII	CATG	3 cut(s)	130, 262, 911
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	6 cut(s)	257, 315, 339, 363, 380, 738
DpnI	GATC	4 cut(s)	119, 134, 333, 641
DpnII	GATC	4 cut(s)	117, 132, 331, 639
Eam1104I	CTCTTC	1 cut(s)	899
EarI	CTCTTC	1 cut(s)	899
Eco130I	CCWWGG	2 cut(s)	237, 643
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	478
Eco91I	GGTNACC	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	166, 625
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	2 cut(s)	237, 643
EcoT22I	ATGCAT	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	237, 643
FaeI	CATG	3 cut(s)	133, 265, 914
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	3 cut(s)	129, 261, 910
FbaI	TGATCA	1 cut(s)	132
FokI	GGATG	5 cut(s)	62, 152, 643, 692, 707
FspBI	CTAG	2 cut(s)	80, 102
GsuI	CTGGAG	1 cut(s)	888
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	2 cut(s)	519, 534
Hin1II	CATG	3 cut(s)	133, 265, 914
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	277, 476
HpaII	CCGG	2 cut(s)	519, 534
Hpy188I	TCNGA	2 cut(s)	302, 639
Hpy188III	TCNNGA	6 cut(s)	281, 434, 480, 566, 677, 867
HpyAV	CCTTC	1 cut(s)	752
HpyCH4III	ACNGT	3 cut(s)	178, 414, 529
HpyCH4V	TGCA	6 cut(s)	143, 539, 605, 634, 749, 794
HpyF10VI	GCNNNNNNNGC	9 cut(s)	68, 207, 227, 262, 311, 602, 794, 797, 800
HpyF3I	CTNAG	6 cut(s)	257, 315, 339, 363, 380, 738
Hsp92II	CATG	3 cut(s)	133, 265, 914
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	117, 132, 331, 639
LmnI	GCTCC	3 cut(s)	91, 303, 311
Lsp1109I	GCAGC	8 cut(s)	58, 363, 729, 775, 778, 806, 809, 812
LweI	GCATC	3 cut(s)	130, 621, 643
MaeI	CTAG	2 cut(s)	80, 102
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	4 cut(s)	119, 134, 333, 641
MboI	GATC	4 cut(s)	117, 132, 331, 639
MboII	GAAGA	5 cut(s)	184, 300, 313, 876, 886
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	6 cut(s)	66, 159, 291, 648, 726, 774
MlyI	GAGTC	2 cut(s)	286, 470
MnlI	CCTC	8 cut(s)	139, 310, 430, 476, 560, 678, 712, 907
Mph1103I	ATGCAT	1 cut(s)	636
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	3 cut(s)	8, 252, 348
MspA1I	CMGCKG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	2 cut(s)	519, 534
MspR9I	CCNGG	3 cut(s)	168, 520, 627
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	2 cut(s)	168, 627
MwoI	GCNNNNNNNGC	9 cut(s)	68, 207, 227, 262, 311, 602, 794, 797, 800
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	4 cut(s)	117, 132, 331, 639
NlaIII	CATG	3 cut(s)	133, 265, 914
NlaIV	GGNNCC	2 cut(s)	93, 517
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	1 cut(s)	265
PaeI	GCATGC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	702
PinAI	ACCGGT	1 cut(s)	533
PleI	GAGTC	2 cut(s)	285, 470
PpsI	GAGTC	2 cut(s)	285, 470
Psp6I	CCWGG	2 cut(s)	166, 625
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	2 cut(s)	166, 625
PspN4I	GGNNCC	2 cut(s)	93, 517
PspPI	GGNCC	2 cut(s)	458, 516
PstI	CTGCAG	1 cut(s)	796
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	8, 252, 348
Sau3AI	GATC	4 cut(s)	117, 132, 331, 639
Sau96I	GGNCC	2 cut(s)	458, 516
SchI	GAGTC	2 cut(s)	286, 470
ScrFI	CCNGG	3 cut(s)	168, 520, 627
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	3 cut(s)	130, 621, 643
SfcI	CTRYAG	2 cut(s)	270, 792
SinI	GGWCC	1 cut(s)	516
SmlI	CTYRAG	2 cut(s)	251, 669
SmoI	CTYRAG	2 cut(s)	251, 669
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	6 cut(s)	66, 159, 291, 648, 726, 774
SsiI	CCGC	2 cut(s)	231, 618
SspI	AATATT	1 cut(s)	609
SspMI	CTAG	2 cut(s)	80, 102
StyD4I	CCNGG	3 cut(s)	166, 518, 625
StyI	CCWWGG	2 cut(s)	237, 643
TaaI	ACNGT	3 cut(s)	178, 414, 529
TaqI	TCGA	1 cut(s)	897
TasI	AATT	6 cut(s)	66, 159, 291, 648, 726, 774
TauI	GCSGC	2 cut(s)	233, 621
Tru1I	TTAA	3 cut(s)	8, 252, 348
Tru9I	TTAA	3 cut(s)	8, 252, 348
TscAI	CASTG	3 cut(s)	211, 460, 721
TseI	GCWGC	8 cut(s)	71, 376, 742, 788, 791, 794, 797, 800
TspDTI	ATGAA	7 cut(s)	214, 313, 431, 462, 652, 711, 768
TspRI	CASTG	3 cut(s)	211, 460, 721
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	516
XapI	RAATTY	1 cut(s)	774
XceI	RCATGY	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	2 cut(s)	80, 102
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.