Prupe.6G338100_v2.0.a1

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
29315709 .. 29319564
3856 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G338100.3

Sequence Viewer

Length: 972 bp
ATGGAAGACAAGTGCGCAATCAGGAGAGATGTCACAGAATTAATTGGAAATACCCCGTTGGTATATCTCAACAATGTTGTGGATGGTTGCGTAGCCCGAATTGCTGCCAAGCTAGAATCAATGGAACCCTGCTCTAGTGTGAAAGACAGGATTGCATTTAGTATGATCAAGGACGCAGAGGATAAAGGTCTAATTACGCCAGGGAAGACTGTTCTTGTTGAGCCCACAAGTGGCAACACTGGCATTGGATTGGCATTCATTGCAGCAAGCAAGGGTTACAAGCTTAAGATAACCATGCCATCTTCAATGAGTCTTGAGAGAAGAATTGTGCTCCTAGCTTTTGGAGCTGAGGTGTACCTCACAGATCCTGCCAAAGGCATTAAGGGAGTTCTTGATAAGGCTGAGGAGTTGCTAACCAGCACGCCTAATAGTTATATGCTTCAGCAATTTGAAAATCCCGCCAATCCAAAGGTTCATTACGAAACCACCGGCCCGGAGATATGGAGAGACTCAGGAGGGAAGGTTGATGCCCTGGTTTCAGGGATAGGGACTGGGGGTACCGTAACCGGTACTGGGAGATTTCTTAAAGAGCAAAATCCAAAGATCAAGGTGTACGGTGTAGAACCAGTCGAAAGTGCAGTCTTAAATGGTGGCCGACCTGGGAAGCATCAGATCCAAGGAATTGGTGCGGGTATCATACCTCAAGTTCTGGATGTAAGCTTGCTCAACGAAGTTATTCAAGTAACCAGTGAAGAAGCTATTGACACCGCTAAGCTGCTTGCCCTGAAAGAAGGTCTTCTGGTGGGGATTTCATCTGGTGCAGCAGCAGCAGCAGCAATAAAGCTGGCCAAGAAGCAGGAAAATGCTGGAAAACTCATTGTTGCTGTGTTCCCCAGCTTCGGAGAGCGTTATTTGTCTTCAGAGCTCTTTGATTCCGTTAGGCATGAGGCGGAAAACATGACTGTTTACTGA

Protein Analysis

324

Amino Acids

34.38

Weight (kDa)

5.81

Isoelectric Point (pI)

21.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 16
Acc65I GGTACC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 557
AciI CCGC 4 cut(s) 459, 689, 768, 950
AclWI GGATC 2 cut(s) 359, 667
AcoI YGGCCR 2 cut(s) 652, 846
AcuI CTGAAG 2 cut(s) 425, 903
AfaI GTAC 4 cut(s) 356, 559, 571, 614
AfiI CCNNNNNNNGG 4 cut(s) 230, 374, 573, 899
AflII CTTAAG 1 cut(s) 284
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 3 cut(s) 306, 452, 740
AjnI CCWGG 3 cut(s) 199, 531, 658
Alw21I GWGCWC 2 cut(s) 333, 927
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 2 cut(s) 359, 667
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 3 cut(s) 490, 652, 846
ApeKI GCWGC 8 cut(s) 104, 263, 775, 821, 824, 827, 830, 833
ArsI GACNNNNNNTTYG 2 cut(s) 624, 656
AseI ATTAAT 1 cut(s) 41
AsiGI ACCGGT 1 cut(s) 566
Asp700I GAANNNNTTC 2 cut(s) 735, 795
Asp718I GGTACC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 494
BalI TGGCCA 1 cut(s) 848
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 2 cut(s) 225, 927
BbsI GAAGAC 4 cut(s) 12, 212, 788, 909
Bbv12I GWGCWC 2 cut(s) 333, 927
BbvCI CCTCAGC 2 cut(s) 348, 402
BbvI GCAGC 8 cut(s) 91, 275, 762, 833, 836, 839, 842, 845
BccI CCATC 2 cut(s) 77, 307
BciT130I CCWGG 3 cut(s) 201, 533, 660
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 3 cut(s) 113, 135, 335
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 8 cut(s) 106, 265, 777, 823, 826, 829, 832, 835
Bme1390I CCNGG 4 cut(s) 201, 494, 533, 660
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 2 cut(s) 126, 559
BmrFI CCNGG 4 cut(s) 201, 494, 533, 660
BmrI ACTGGG 2 cut(s) 561, 582
BmsI GCATC 2 cut(s) 517, 676
BmuI ACTGGG 2 cut(s) 561, 582
BpiI GAAGAC 4 cut(s) 12, 212, 788, 909
Bpu10I CCTNAGC 2 cut(s) 348, 402
Bpu1102I GCTNAGC 1 cut(s) 771
BpuEI CTTGAG 2 cut(s) 335, 687
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 4 cut(s) 200, 531, 659, 676
BsaWI WCCGGW 1 cut(s) 566
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 507, 537
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 374, 573, 899
Bse118I RCCGGY 2 cut(s) 488, 566
Bse1I ACTGG 5 cut(s) 244, 556, 577, 626, 747
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 3 cut(s) 201, 533, 660
BseDI CCNNGG 4 cut(s) 200, 531, 659, 676
BseGI GGATG 2 cut(s) 88, 718
BseLI CCNNNNNNNGG 4 cut(s) 230, 374, 573, 899
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 3 cut(s) 339, 393, 525
BseNI ACTGG 5 cut(s) 244, 556, 577, 626, 747
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 8 cut(s) 91, 275, 762, 833, 836, 839, 842, 845
BseYI CCCAGC 1 cut(s) 893
BsgI GTGCAG 2 cut(s) 657, 840
BshFI GGCC 3 cut(s) 492, 654, 848
BshNI GGYRCC 1 cut(s) 557
BshTI ACCGGT 1 cut(s) 566
BsiHKAI GWGCWC 2 cut(s) 333, 927
BsiSI CCGG 3 cut(s) 489, 494, 567
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 4 cut(s) 230, 374, 573, 899
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 562
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 3 cut(s) 492, 654, 848
Bsp1286I GDGCHC 3 cut(s) 225, 333, 927
Bsp143I GATC 4 cut(s) 165, 364, 603, 672
Bsp1720I GCTNAGC 1 cut(s) 771
BspACI CCGC 4 cut(s) 459, 689, 768, 950
BspANI GGCC 3 cut(s) 492, 654, 848
BspCNI CTCAG 3 cut(s) 340, 394, 524
BspLI GGNNCC 2 cut(s) 126, 559
BspPI GGATC 2 cut(s) 359, 667
BspT107I GGYRCC 1 cut(s) 557
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 488, 566
BsrI ACTGG 5 cut(s) 244, 556, 577, 626, 747
BssAI RCCGGY 2 cut(s) 488, 566
BssECI CCNNGG 4 cut(s) 200, 531, 659, 676
BssMI GATC 4 cut(s) 165, 364, 603, 672
BssT1I CCWWGG 1 cut(s) 676
Bst2UI CCWGG 3 cut(s) 201, 533, 660
Bst4CI ACNGT 4 cut(s) 211, 562, 617, 964
BstAFI CTTAAG 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 5 cut(s) 268, 422, 722, 780, 846
BstDEI CTNAG 4 cut(s) 348, 402, 511, 771
BstENI CCTNNNNNAGG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 88, 718
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 4 cut(s) 168, 367, 606, 675
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 4 cut(s) 165, 364, 603, 672
BstMWI GCNNNNNNNGC 7 cut(s) 101, 240, 260, 344, 827, 830, 833
BstNI CCWGG 3 cut(s) 201, 533, 660
BstSCI CCNGG 4 cut(s) 199, 492, 531, 658
BstV1I GCAGC 8 cut(s) 91, 275, 762, 833, 836, 839, 842, 845
BstV2I GAAGAC 4 cut(s) 12, 212, 788, 909
BstX2I RGATCY 2 cut(s) 364, 672
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 2 cut(s) 364, 672
BsuRI GGCC 3 cut(s) 492, 654, 848
BtsCI GGATG 2 cut(s) 88, 718
BtsIMutI CAGTG 2 cut(s) 237, 754
Cac8I GCNNGC 5 cut(s) 268, 422, 722, 780, 846
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 2 cut(s) 488, 566
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 1 cut(s) 182
Csp6I GTAC 4 cut(s) 355, 558, 570, 613
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 3 cut(s) 295, 944, 958
CviQI GTAC 4 cut(s) 355, 558, 570, 613
DdeI CTNAG 4 cut(s) 348, 402, 511, 771
DpnI GATC 4 cut(s) 167, 366, 605, 674
DpnII GATC 4 cut(s) 165, 364, 603, 672
EaeI YGGCCR 2 cut(s) 652, 846
EciI GGCGGA 1 cut(s) 965
Ecl136II GAGCTC 1 cut(s) 925
Eco130I CCWWGG 1 cut(s) 676
Eco24I GRGCYC 2 cut(s) 225, 927
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 2 cut(s) 425, 903
EcoICRI GAGCTC 1 cut(s) 925
EcoNI CCTNNNNNAGG 1 cut(s) 372
EcoRII CCWGG 3 cut(s) 199, 531, 658
EcoT14I CCWWGG 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 225, 927
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 3 cut(s) 298, 947, 961
FaiI YATR 9 cut(s) 64, 164, 296, 435, 437, 502, 698, 945, 959
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 1 cut(s) 562
FatI CATG 3 cut(s) 294, 943, 957
FauI CCCGC 2 cut(s) 466, 682
FbaI TGATCA 1 cut(s) 165
Fnu4HI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
FokI GGATG 2 cut(s) 95, 725
FriOI GRGCYC 2 cut(s) 225, 927
Fsp4HI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
FspBI CTAG 3 cut(s) 113, 135, 335
FspI TGCGCA 1 cut(s) 16
GlaI GCGC 1 cut(s) 16
GluI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
GsaI CCCAGC 1 cut(s) 897
HaeIII GGCC 3 cut(s) 492, 654, 848
HapII CCGG 3 cut(s) 489, 494, 567
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 17
Hin1II CATG 3 cut(s) 298, 947, 961
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 2 cut(s) 281, 718
HinfI GANTC 4 cut(s) 116, 310, 509, 932
HpaII CCGG 3 cut(s) 489, 494, 567
Hpy166II GTNNAC 3 cut(s) 355, 613, 967
Hpy188I TCNGA 3 cut(s) 672, 902, 922
Hpy188III TCNNGA 5 cut(s) 22, 314, 392, 513, 710
Hpy8I GTNNAC 3 cut(s) 355, 613, 967
HpyAV CCTTC 2 cut(s) 514, 785
HpyCH4III ACNGT 4 cut(s) 211, 562, 617, 964
HpyCH4V TGCA 4 cut(s) 155, 263, 638, 821
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 240, 260, 344, 827, 830, 833
HpyF3I CTNAG 4 cut(s) 348, 402, 511, 771
Hsp92II CATG 3 cut(s) 298, 947, 961
HspAI GCGC 1 cut(s) 15
KpnI GGTACC 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 4 cut(s) 165, 364, 603, 672
LmnI GCTCC 2 cut(s) 336, 344
Lsp1109I GCAGC 8 cut(s) 91, 275, 762, 833, 836, 839, 842, 845
LweI GCATC 2 cut(s) 517, 676
MaeI CTAG 3 cut(s) 113, 135, 335
MaeIII GTNAC 4 cut(s) 31, 275, 562, 742
MalI GATC 4 cut(s) 167, 366, 605, 674
MboI GATC 4 cut(s) 165, 364, 603, 672
MboII GAAGA 7 cut(s) 17, 217, 294, 333, 764, 788, 909
MflI RGATCY 2 cut(s) 364, 672
MhlI GDGCHC 3 cut(s) 225, 333, 927
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 7 cut(s) 38, 42, 99, 192, 324, 446, 681
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 2 cut(s) 319, 503
MnlI CCTC 7 cut(s) 172, 343, 368, 397, 509, 711, 940
Mox20I TGGCCA 1 cut(s) 848
MroXI GAANNNNTTC 2 cut(s) 735, 795
MscI TGGCCA 1 cut(s) 848
MseI TTAA 5 cut(s) 41, 285, 381, 585, 644
Msp20I TGGCCA 1 cut(s) 848
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 3 cut(s) 489, 494, 567
MspR9I CCNGG 4 cut(s) 201, 494, 533, 660
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 3 cut(s) 201, 533, 660
MwoI GCNNNNNNNGC 7 cut(s) 101, 240, 260, 344, 827, 830, 833
NciI CCSGG 1 cut(s) 494
NdeII GATC 4 cut(s) 165, 364, 603, 672
NlaIII CATG 3 cut(s) 298, 947, 961
NlaIV GGNNCC 2 cut(s) 126, 559
NmuCI GTSAC 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 16
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 2 cut(s) 735, 795
PfeI GAWTC 2 cut(s) 116, 932
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 8 cut(s) 106, 265, 777, 823, 826, 829, 832, 835
PleI GAGTC 2 cut(s) 318, 503
PpsI GAGTC 2 cut(s) 318, 503
PshBI ATTAAT 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 927
Psp6I CCWGG 3 cut(s) 199, 531, 658
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 3 cut(s) 199, 531, 658
PspN4I GGNNCC 2 cut(s) 126, 559
PspPI GGNCC 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 2 cut(s) 364, 672
RsaI GTAC 4 cut(s) 356, 559, 571, 614
RsaNI GTAC 4 cut(s) 355, 558, 570, 613
SacI GAGCTC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 41, 285, 381, 585, 644
SatI GCNGC 8 cut(s) 105, 264, 776, 822, 825, 828, 831, 834
Sau3AI GATC 4 cut(s) 165, 364, 603, 672
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 2 cut(s) 319, 503
ScrFI CCNGG 4 cut(s) 201, 494, 533, 660
SduI GDGCHC 3 cut(s) 225, 333, 927
SfaNI GCATC 2 cut(s) 517, 676
SmlI CTYRAG 3 cut(s) 284, 314, 702
SmoI CTYRAG 3 cut(s) 284, 314, 702
Sse9I AATT 7 cut(s) 38, 42, 99, 192, 324, 446, 681
SsiI CCGC 4 cut(s) 459, 689, 768, 950
SspMI CTAG 3 cut(s) 113, 135, 335
SstI GAGCTC 1 cut(s) 927
StyD4I CCNGG 4 cut(s) 199, 492, 531, 658
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 4 cut(s) 211, 562, 617, 964
TaqI TCGA 1 cut(s) 630
TasI AATT 7 cut(s) 38, 42, 99, 192, 324, 446, 681
TfiI GAWTC 2 cut(s) 116, 932
Tru1I TTAA 5 cut(s) 41, 285, 381, 585, 644
Tru9I TTAA 5 cut(s) 41, 285, 381, 585, 644
TscAI CASTG 2 cut(s) 244, 754
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 8 cut(s) 104, 263, 775, 821, 824, 827, 830, 833
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 247, 464, 801
TspGWI ACGGA 1 cut(s) 925
TspRI CASTG 2 cut(s) 244, 754
Vha464I CTTAAG 1 cut(s) 284
VspI ATTAAT 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 372
XmnI GAANNNNTTC 2 cut(s) 735, 795
XspI CTAG 3 cut(s) 113, 135, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.