Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

3264333 .. 3266382

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG046700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGGGCCAATGTGCAATCAAGAAAGATGTCACCGAATTAATTGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGATGATGGGGCCCTGCTCTAGTGTTAAAGACAGGTATAGTATTCATTATGAAACCACTGGCCCAGAGATCTGGAGAGACTCAGCAAGGAAAGTTGATATCTTGGTTTCAGGGATAGGAACCGGTGGCACAGTAACCGGTATAGGGAAATTTCTTAAAGAGCAAAATCCAGAGATCAAGGTTTGCGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATGGAGGTCCACCTGGAAGGCATCTGATCCAAGGAATCGGTGTTGGCTTCATACCTCAAGTTCTCGATGTTAGCCTGCTAGACGAAGTTATTCCAGTATCCAGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTGAAAGAAGGTCTTTTGGTGGGATTCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTAGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

217

Amino Acids

23.14

Weight (kDa)

5.21

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	55 - 193	2e-32	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	592
AccI	GTMKAC	2 cut(s)	63, 602
AciI	CCGC	2 cut(s)	300, 592
AclWI	GGATC	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	258, 584
AgeI	ACCGGT	2 cut(s)	236, 251
AgsI	TTSAA	2 cut(s)	331, 472
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	3 cut(s)	95, 112, 460
AluI	AGCT	3 cut(s)	95, 112, 460
Alw26I	GTCTC	2 cut(s)	186, 443
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	4 cut(s)	7, 125, 175, 539
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	4 cut(s)	104, 506, 515, 518
ApoI	RAATTY	1 cut(s)	263
AseI	ATTAAT	1 cut(s)	41
AsiGI	ACCGGT	2 cut(s)	236, 251
Asp700I	GAANNNNTTC	1 cut(s)	420
AspS9I	GGNCC	5 cut(s)	7, 125, 126, 176, 338
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	91, 493, 527, 530
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	186, 443
BfaI	CTAG	3 cut(s)	113, 135, 410
BfuI	GTATCC	1 cut(s)	439
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	4 cut(s)	105, 507, 516, 519
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	4 cut(s)	106, 508, 517, 520
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	5 cut(s)	7, 125, 126, 176, 338
BmiI	GGNNCC	3 cut(s)	126, 127, 235
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	208
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	2 cut(s)	236, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 584
Bse118I	RCCGGY	2 cut(s)	236, 251
Bse1I	ACTGG	5 cut(s)	178, 311, 425, 432, 579
Bse8I	GATNNNNATC	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	496
BseLI	CCNNNNNNNGG	2 cut(s)	258, 584
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	5 cut(s)	178, 311, 425, 432, 579
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	4 cut(s)	91, 493, 527, 530
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	9, 127, 177, 541
BshTI	ACCGGT	2 cut(s)	236, 251
BsiSI	CCGG	3 cut(s)	237, 252, 552
BslI	CCNNNNNNNGG	2 cut(s)	258, 584
BsmAI	GTCTC	2 cut(s)	186, 443
BsnI	GGCC	4 cut(s)	9, 127, 177, 541
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	183, 288, 357
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	2 cut(s)	300, 592
BspANI	GGCC	4 cut(s)	9, 127, 177, 541
BspCNI	CTCAG	1 cut(s)	209
BspLI	GGNNCC	3 cut(s)	126, 127, 235
BspPI	GGATC	1 cut(s)	352
BsrBI	CCGCTC	1 cut(s)	592
BsrFI	RCCGGY	2 cut(s)	236, 251
BsrI	ACTGG	5 cut(s)	178, 311, 425, 432, 579
BssAI	RCCGGY	2 cut(s)	236, 251
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	183, 288, 357
BssNAI	GTATAC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	361
Bst1107I	GTATAC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	196, 456
BstKTI	GATC	3 cut(s)	186, 291, 360
BstMAI	GTCTC	2 cut(s)	186, 443
BstMBI	GATC	3 cut(s)	183, 288, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 512, 515
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	91, 493, 527, 530
BstX2I	RGATCY	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	183
BstZ17I	GTATAC	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	4 cut(s)	9, 127, 177, 541
BtsIMutI	CAGTG	2 cut(s)	171, 439
Cac8I	GCNNGC	1 cut(s)	407
Cfr10I	RCCGGY	2 cut(s)	236, 251
Cfr13I	GGNCC	5 cut(s)	7, 125, 126, 176, 338
CspAI	ACCGGT	2 cut(s)	236, 251
CviAII	CATG	2 cut(s)	629, 643
CviJI	RGCY	9 cut(s)	9, 95, 112, 127, 177, 378, 405, 460, 541
CviKI_1	RGCY	9 cut(s)	9, 95, 112, 127, 177, 378, 405, 460, 541
DdeI	CTNAG	2 cut(s)	196, 456
DpnI	GATC	3 cut(s)	185, 290, 359
DpnII	GATC	3 cut(s)	183, 288, 357
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	129
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	338
EcoO109I	RGGNCCY	2 cut(s)	125, 126
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	2 cut(s)	632, 646
FaiI	YATR	7 cut(s)	64, 153, 165, 257, 383, 630, 644
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FatI	CATG	2 cut(s)	628, 642
FblI	GTMKAC	2 cut(s)	63, 602
Fnu4HI	GCNGC	4 cut(s)	105, 507, 516, 519
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	105, 507, 516, 519
FspBI	CTAG	3 cut(s)	113, 135, 410
GluI	GCNGC	4 cut(s)	105, 507, 516, 519
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	4 cut(s)	9, 127, 177, 541
HapII	CCGG	3 cut(s)	237, 252, 552
Hin1II	CATG	2 cut(s)	632, 646
HinfI	GANTC	4 cut(s)	194, 366, 440, 492
HpaII	CCGG	3 cut(s)	237, 252, 552
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	64, 341, 603
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	5 cut(s)	22, 187, 284, 328, 395
Hpy8I	GTNNAC	3 cut(s)	64, 341, 603
HpyAV	CCTTC	3 cut(s)	77, 342, 470
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	17, 323, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 512, 515
HpyF3I	CTNAG	2 cut(s)	196, 456
Hsp92II	CATG	2 cut(s)	632, 646
Kzo9I	GATC	3 cut(s)	183, 288, 357
Lsp1109I	GCAGC	4 cut(s)	91, 493, 527, 530
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	3 cut(s)	113, 135, 410
MaeIII	GTNAC	2 cut(s)	31, 247
MalI	GATC	3 cut(s)	185, 290, 359
MbiI	CCGCTC	1 cut(s)	592
MboI	GATC	3 cut(s)	183, 288, 357
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	3 cut(s)	38, 42, 263
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	4 cut(s)	329, 396, 430, 625
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	3 cut(s)	41, 141, 270
MspI	CCGG	3 cut(s)	237, 252, 552
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	101, 512, 515
NdeII	GATC	3 cut(s)	183, 288, 357
NlaIII	CATG	2 cut(s)	632, 646
NlaIV	GGNNCC	3 cut(s)	126, 127, 235
NmuCI	GTSAC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	366, 440, 492
PinAI	ACCGGT	2 cut(s)	236, 251
PkrI	GCNGC	4 cut(s)	106, 508, 517, 520
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	126, 127, 235
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	5 cut(s)	7, 125, 126, 176, 338
PsuI	RGATCY	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	41, 141, 270
SatI	GCNGC	4 cut(s)	105, 507, 516, 519
Sau3AI	GATC	3 cut(s)	183, 288, 357
Sau96I	GGNCC	5 cut(s)	7, 125, 126, 176, 338
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	361
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	3 cut(s)	38, 42, 263
SsiI	CCGC	2 cut(s)	300, 592
SspMI	CTAG	3 cut(s)	113, 135, 410
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	38, 42, 263
TfiI	GAWTC	3 cut(s)	366, 440, 492
Tru1I	TTAA	3 cut(s)	41, 141, 270
Tru9I	TTAA	3 cut(s)	41, 141, 270
TscAI	CASTG	2 cut(s)	178, 439
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	104, 506, 515, 518
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	149, 180, 370
TspRI	CASTG	2 cut(s)	178, 439
VpaK11BI	GGWCC	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	263
XmiI	GTMKAC	2 cut(s)	63, 602
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	3 cut(s)	113, 135, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.