Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011680.1

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

69798 .. 72232

Gene Structure 2435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011680.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggagggccaatgtgcaatcaagaaagatgtcactgaattaatcggaaataccccaatggtatacctgaacaatgttgtggaaggttgtgtagctcgaattgctgccaagctcgagatgatggaaccctgctgtagtgtgaaagacaggattgcatatagtatgatcaaggatgcagaagataaaggtctaataactccggggaagactgttctcattgagcccacaagtggaaacactggcattggattggcattcatcgcagcaagcaagggttacaagttgaagttagtcatgccatctgtaatgagtcttgaaaaaagaattgtgctcttagcttttggagctgaggtttacctcacagattgggccaaaggctttaagggaagtcttgataaggttgaggagttgctacgtgacacacctaatagtcatacgcttcagcaatttgaaaaccctgccaatccaaagattcattatgaaaccactggcccggagatatggagagactcggctgggaaagttgatatcttggtttcggggataggaactggtggtacagtaactggtgtagggaagtttcttaaagagcaaaatccagagatcaaggtttacggtgtagaaccaattgagagtgcagtcttgaatggtggtccacctgggaagcatctgatccaaggacttggtgctggcatcatacctcaagtgctcgatgttaacctgccggataaagttattacagtatccagtgaggaatctatcgacactgctaggctgcttgccctaaaagaaggtcttttggtggggatctcatctggtgctgcagcagcggtagcaataaagttggcaaagaagcaggaaaatgctggaaaactaatagttgcaagtcttctttaccattcaattgttcatggcattagttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

308

Amino Acids

32.73

Weight (kDa)

6.25

Isoelectric Point (pI)

16.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	729
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	830
AclWI	GGATC	2 cut(s)	667, 815
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	559
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	5 cut(s)	286, 317, 452, 646, 903
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	4 cut(s)	95, 112, 338, 347
AluI	AGCT	4 cut(s)	95, 112, 338, 347
Alw21I	GWGCWC	2 cut(s)	333, 711
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	667, 815
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	3 cut(s)	7, 369, 490
ApeKI	GCWGC	6 cut(s)	104, 263, 775, 821, 824, 827
AseI	ATTAAT	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	7, 369, 491, 653
AsuC2I	CCSGG	2 cut(s)	201, 494
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	212, 881
Bbv12I	GWGCWC	2 cut(s)	333, 711
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	6 cut(s)	91, 275, 762, 808, 836, 839
BccI	CCATC	2 cut(s)	115, 307
BciT130I	CCWGG	1 cut(s)	660
BciVI	GTATCC	1 cut(s)	754
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	2 cut(s)	201, 494
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	2 cut(s)	133, 822
BfuAI	ACCTGC	1 cut(s)	729
BfuI	GTATCC	1 cut(s)	754
BisI	GCNGC	6 cut(s)	105, 264, 776, 822, 825, 828
BlsI	GCNGC	6 cut(s)	106, 265, 777, 823, 826, 829
Bme1390I	CCNGG	3 cut(s)	201, 494, 660
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	4 cut(s)	7, 369, 491, 653
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	3 cut(s)	201, 494, 660
BmsI	GCATC	3 cut(s)	163, 676, 702
BpiI	GAAGAC	2 cut(s)	212, 881
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	687
BpuMI	CCSGG	2 cut(s)	201, 494
BsaAI	YACGTR	1 cut(s)	416
BsaJI	CCNNGG	3 cut(s)	200, 659, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	5 cut(s)	244, 493, 556, 571, 747
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	3 cut(s)	200, 659, 676
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	5 cut(s)	244, 493, 556, 571, 747
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	6 cut(s)	91, 275, 762, 808, 836, 839
BseYI	CCCAGC	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	3 cut(s)	9, 371, 492
BsiHKAI	GWGCWC	2 cut(s)	333, 711
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	200, 494, 725
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	9, 371, 492
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	3 cut(s)	225, 333, 711
Bsp143I	GATC	4 cut(s)	165, 603, 672, 807
BspACI	CCGC	1 cut(s)	830
BspANI	GGCC	3 cut(s)	9, 371, 492
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	1 cut(s)	826
BspMI	ACCTGC	1 cut(s)	729
BspPI	GGATC	2 cut(s)	667, 815
BsrI	ACTGG	5 cut(s)	244, 493, 556, 571, 747
BssECI	CCNNGG	3 cut(s)	200, 659, 676
BssMI	GATC	4 cut(s)	165, 603, 672, 807
BssNAI	GTATAC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	676
Bst1107I	GTATAC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	4 cut(s)	211, 562, 617, 742
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	268, 691, 780
BstDEI	CTNAG	2 cut(s)	334, 348
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	4 cut(s)	168, 606, 675, 810
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	4 cut(s)	165, 603, 672, 807
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 260, 344, 827, 833
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	3 cut(s)	199, 492, 658
BstSFI	CTRYAG	2 cut(s)	133, 822
BstV1I	GCAGC	6 cut(s)	91, 275, 762, 808, 836, 839
BstV2I	GAAGAC	2 cut(s)	212, 881
BstX2I	RGATCY	1 cut(s)	807
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	807
BstZ17I	GTATAC	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	9, 371, 492
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	5 cut(s)	33, 237, 486, 754, 765
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	3 cut(s)	268, 691, 780
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr13I	GGNCC	4 cut(s)	7, 369, 491, 653
Csp6I	GTAC	1 cut(s)	558
CviAII	CATG	2 cut(s)	295, 911
CviQI	GTAC	1 cut(s)	558
DdeI	CTNAG	2 cut(s)	334, 348
DpnI	GATC	4 cut(s)	167, 605, 674, 809
DpnII	GATC	4 cut(s)	165, 603, 672, 807
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	2 cut(s)	298, 914
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FatI	CATG	2 cut(s)	294, 910
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	6 cut(s)	105, 264, 776, 822, 825, 828
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	6 cut(s)	105, 264, 776, 822, 825, 828
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	6 cut(s)	105, 264, 776, 822, 825, 828
GsaI	CCCAGC	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	9, 371, 492
HapII	CCGG	3 cut(s)	200, 494, 725
Hin1II	CATG	2 cut(s)	298, 914
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	4 cut(s)	310, 472, 509, 755
HpaI	GTTAAC	1 cut(s)	718
HpaII	CCGG	3 cut(s)	200, 494, 725
Hpy166II	GTNNAC	5 cut(s)	64, 355, 613, 656, 718
Hpy188I	TCNGA	2 cut(s)	47, 672
Hpy188III	TCNNGA	6 cut(s)	22, 115, 314, 392, 599, 643
Hpy8I	GTNNAC	5 cut(s)	64, 355, 613, 656, 718
HpyAV	CCTTC	2 cut(s)	77, 785
HpyCH4III	ACNGT	4 cut(s)	211, 562, 617, 742
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	6 cut(s)	17, 155, 176, 638, 824, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 260, 344, 827, 833
HpyF3I	CTNAG	2 cut(s)	334, 348
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	298, 914
Ksp22I	TGATCA	1 cut(s)	165
KspAI	GTTAAC	1 cut(s)	718
Kzo9I	GATC	4 cut(s)	165, 603, 672, 807
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	6 cut(s)	91, 275, 762, 808, 836, 839
LweI	GCATC	3 cut(s)	163, 676, 702
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	4 cut(s)	31, 275, 416, 562
MalI	GATC	4 cut(s)	167, 605, 674, 809
MboI	GATC	4 cut(s)	165, 603, 672, 807
MboII	GAAGA	3 cut(s)	191, 217, 881
MfeI	CAATTG	2 cut(s)	627, 903
MflI	RGATCY	1 cut(s)	807
MhlI	GDGCHC	3 cut(s)	225, 333, 711
MluCI	AATT	6 cut(s)	38, 99, 324, 446, 627, 903
MlyI	GAGTC	2 cut(s)	319, 503
MnlI	CCTC	5 cut(s)	343, 368, 397, 711, 745
MseI	TTAA	5 cut(s)	41, 381, 585, 717, 925
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	3 cut(s)	200, 494, 725
MspR9I	CCNGG	3 cut(s)	201, 494, 660
MunI	CAATTG	2 cut(s)	627, 903
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	5 cut(s)	101, 260, 344, 827, 833
NciI	CCSGG	2 cut(s)	201, 494
NdeII	GATC	4 cut(s)	165, 603, 672, 807
NlaIII	CATG	2 cut(s)	298, 914
NlaIV	GGNNCC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	2 cut(s)	31, 416
PaeR7I	CTCGAG	1 cut(s)	113
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	472, 755
PkrI	GCNGC	6 cut(s)	106, 265, 777, 823, 826, 829
PleI	GAGTC	2 cut(s)	318, 503
PpsI	GAGTC	2 cut(s)	318, 503
Ppu21I	YACGTR	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	658
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	4 cut(s)	7, 369, 491, 653
PsrI	GAACNNNNNNTAC	2 cut(s)	541, 573
PstI	CTGCAG	1 cut(s)	826
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	807
RsaI	GTAC	1 cut(s)	559
RsaNI	GTAC	1 cut(s)	558
SaqAI	TTAA	5 cut(s)	41, 381, 585, 717, 925
SatI	GCNGC	6 cut(s)	105, 264, 776, 822, 825, 828
Sau3AI	GATC	4 cut(s)	165, 603, 672, 807
Sau96I	GGNCC	4 cut(s)	7, 369, 491, 653
SchI	GAGTC	2 cut(s)	319, 503
ScrFI	CCNGG	3 cut(s)	201, 494, 660
SduI	GDGCHC	3 cut(s)	225, 333, 711
SfaNI	GCATC	3 cut(s)	163, 676, 702
SfcI	CTRYAG	2 cut(s)	133, 822
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	653
SlaI	CTCGAG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	113, 702
SmoI	CTYRAG	2 cut(s)	113, 702
Sse9I	AATT	6 cut(s)	38, 99, 324, 446, 627, 903
SsiI	CCGC	1 cut(s)	830
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	199, 492, 658
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	4 cut(s)	211, 562, 617, 742
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	4 cut(s)	97, 114, 711, 762
TasI	AATT	6 cut(s)	38, 99, 324, 446, 627, 903
TfiI	GAWTC	2 cut(s)	472, 755
Tru1I	TTAA	5 cut(s)	41, 381, 585, 717, 925
Tru9I	TTAA	5 cut(s)	41, 381, 585, 717, 925
TscAI	CASTG	5 cut(s)	40, 244, 493, 754, 772
TseFI	GTSAC	2 cut(s)	31, 416
TseI	GCWGC	6 cut(s)	104, 263, 775, 821, 824, 827
Tsp45I	GTSAC	2 cut(s)	31, 416
TspDTI	ATGAA	4 cut(s)	247, 464, 495, 899
TspRI	CASTG	5 cut(s)	40, 244, 493, 754, 772
VpaK11BI	GGWCC	1 cut(s)	653
VspI	ATTAAT	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.