Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

2810903 .. 2814923

Gene Structure 4021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAGGTCACCATGGAGGGCCAATGTGCAATCAAGAAAGATGTCACCGAATTAATAGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGACGATGGAACCCTGCTCTAGTGTTAAAGACAGGATTGCACATAGTATGATCAAGGATGCAGAGGATAAAGGTCTAATAAGTCCGGGAAAGACTGTTCTCATTGAGCCCACAAGTGGCAACACTGGCATTGGATTAGCATTCATAGCAGCTAGCAAGGGTTACAAGTTGAAGCTAGTCATGCCATCATCATATAGTATTGAAAGAAGAATTGTGCTCCTAGCTTTTGGAGCTGAGGTATACCTCACAGATGTGGAAAAAGGTATTAAGGGAGTTTTTGATAAGGCTGAGGAGTTGCTACGTGACACACCTGATAGTCATATGCTTCAGCAATTTGAAAATCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACTCAGCAGGGAAAGTTGATATCTTGGTTTCGGGGATAGGAACCGGTGGCACAGTAACTGGTATAGGGAAATTCCTTAAAGAACAAAATCCAGAGATCAAGGTGTACGGTGTAGAACCAGTTGAGAGTGCAGTCCTGAATGGTGGTCCACCTGGAAAGCATCTGATCCAAGGAATCGGTGCTGGCTTCATTCCTCAAGTTCTTGATGTTAGCCTGCTAGACGAAGTTATTCCAGTATCCAGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTAAAAGAAGGTCTTTTGGTGGGAATCTCATCTGGTGCTGCAACAGCAGCAGCAATTAAGTTGGCAAAAAAGCAGGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCTAGTTTTGGAGAGCGGTATCTGTCTACTGCACTCTTTGATACCATTAGGCATGAAGCAGAAAACATGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

326

Amino Acids

34.87

Weight (kDa)

5.44

Isoelectric Point (pI)

24.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	15 - 302	1.1e-72	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	919
AccI	GTMKAC	3 cut(s)	75, 366, 929
AciI	CCGC	1 cut(s)	919
AclWI	GGATC	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	590
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	2 cut(s)	242, 911
AgeI	ACCGGT	1 cut(s)	563
AgsI	TTSAA	3 cut(s)	298, 329, 464
AjnI	CCWGG	1 cut(s)	670
AleI	CACNNNNGTG	1 cut(s)	377
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	7 cut(s)	107, 124, 278, 301, 350, 359, 787
AluI	AGCT	7 cut(s)	107, 124, 278, 301, 350, 359, 787
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	3 cut(s)	122, 513, 770
AlwI	GGATC	1 cut(s)	679
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	2 cut(s)	19, 502
ApeKI	GCWGC	5 cut(s)	116, 275, 833, 842, 845
ApoI	RAATTY	1 cut(s)	590
AseI	ATTAAT	1 cut(s)	53
AsiGI	ACCGGT	1 cut(s)	563
Asp700I	GAANNNNTTC	1 cut(s)	747
AspS9I	GGNCC	3 cut(s)	19, 503, 665
AsuC2I	CCSGG	2 cut(s)	213, 506
AsuHPI	GGTGA	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	2 cut(s)	360, 414
BbvI	GCAGC	5 cut(s)	103, 287, 820, 854, 857
BccI	CCATC	2 cut(s)	127, 319
BciT130I	CCWGG	1 cut(s)	672
BciVI	GTATCC	1 cut(s)	766
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	2 cut(s)	213, 506
BcoDI	GTCTC	3 cut(s)	122, 513, 770
BfaI	CTAG	7 cut(s)	125, 147, 279, 302, 347, 737, 906
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	5 cut(s)	117, 276, 834, 843, 846
BlpI	GCTNAGC	1 cut(s)	783
BlsI	GCNGC	5 cut(s)	118, 277, 835, 844, 847
Bme1390I	CCNGG	3 cut(s)	213, 506, 672
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	19, 503, 665
BmiI	GGNNCC	2 cut(s)	138, 562
BmrFI	CCNGG	3 cut(s)	213, 506, 672
BmsI	GCATC	2 cut(s)	175, 688
BmtI	GCTAGC	1 cut(s)	282
Bpu10I	CCTNAGC	2 cut(s)	360, 414
Bpu1102I	GCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	1 cut(s)	699
BpuMI	CCSGG	2 cut(s)	213, 506
BsaAI	YACGTR	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	12, 688
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 911
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	6 cut(s)	256, 505, 583, 638, 752, 759
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	2 cut(s)	12, 688
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	242, 911
BseMII	CTCAG	3 cut(s)	351, 405, 537
BseNI	ACTGG	6 cut(s)	256, 505, 583, 638, 752, 759
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	5 cut(s)	103, 287, 820, 854, 857
BsgI	GTGCAG	2 cut(s)	669, 918
BshFI	GGCC	2 cut(s)	21, 504
BshTI	ACCGGT	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	4 cut(s)	212, 506, 564, 879
BslI	CCNNNNNNNGG	2 cut(s)	242, 911
BsmAI	GTCTC	3 cut(s)	122, 513, 770
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	21, 504
Bsp1286I	GDGCHC	2 cut(s)	237, 345
Bsp143I	GATC	3 cut(s)	177, 615, 684
Bsp1720I	GCTNAGC	1 cut(s)	783
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	919
BspANI	GGCC	2 cut(s)	21, 504
BspCNI	CTCAG	3 cut(s)	352, 406, 536
BspLI	GGNNCC	2 cut(s)	138, 562
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	679
BsrBI	CCGCTC	1 cut(s)	919
BsrFI	RCCGGY	1 cut(s)	563
BsrI	ACTGG	6 cut(s)	256, 505, 583, 638, 752, 759
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	12, 688
BssMI	GATC	3 cut(s)	177, 615, 684
BssNAI	GTATAC	2 cut(s)	76, 367
BssT1I	CCWWGG	2 cut(s)	12, 688
Bst1107I	GTATAC	2 cut(s)	76, 367
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	3 cut(s)	223, 574, 629
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	280, 703, 734
BstDEI	CTNAG	4 cut(s)	360, 414, 523, 783
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	180, 618, 687
BstMAI	GTCTC	3 cut(s)	122, 513, 770
BstMBI	GATC	3 cut(s)	177, 615, 684
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 252, 272, 307, 356, 839, 842
BstNI	CCWGG	1 cut(s)	672
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	3 cut(s)	211, 504, 670
BstV1I	GCAGC	5 cut(s)	103, 287, 820, 854, 857
BstZ17I	GTATAC	2 cut(s)	76, 367
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	21, 504
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	3 cut(s)	249, 498, 766
Cac8I	GCNNGC	3 cut(s)	280, 703, 734
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	3 cut(s)	19, 503, 665
Csp6I	GTAC	1 cut(s)	625
CspAI	ACCGGT	1 cut(s)	563
CviAII	CATG	4 cut(s)	13, 307, 956, 970
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	4 cut(s)	360, 414, 523, 783
DpnI	GATC	3 cut(s)	179, 617, 686
DpnII	GATC	3 cut(s)	177, 615, 684
Eco130I	CCWWGG	2 cut(s)	12, 688
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	670
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	12, 688
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	12, 688
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	4 cut(s)	16, 310, 959, 973
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FatI	CATG	4 cut(s)	12, 306, 955, 969
FauNDI	CATATG	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	3 cut(s)	75, 366, 929
Fnu4HI	GCNGC	5 cut(s)	117, 276, 834, 843, 846
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	5 cut(s)	117, 276, 834, 843, 846
FspBI	CTAG	7 cut(s)	125, 147, 279, 302, 347, 737, 906
GluI	GCNGC	5 cut(s)	117, 276, 834, 843, 846
HaeIII	GGCC	2 cut(s)	21, 504
HapII	CCGG	4 cut(s)	212, 506, 564, 879
Hin1II	CATG	4 cut(s)	16, 310, 959, 973
HinfI	GANTC	5 cut(s)	484, 521, 693, 767, 819
HpaII	CCGG	4 cut(s)	212, 506, 564, 879
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	5 cut(s)	76, 367, 625, 668, 930
Hpy188I	TCNGA	1 cut(s)	684
Hpy188III	TCNNGA	4 cut(s)	34, 611, 655, 722
Hpy8I	GTNNAC	5 cut(s)	76, 367, 625, 668, 930
HpyAV	CCTTC	2 cut(s)	89, 797
HpyCH4III	ACNGT	3 cut(s)	223, 574, 629
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	6 cut(s)	29, 167, 188, 650, 836, 935
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 252, 272, 307, 356, 839, 842
HpyF3I	CTNAG	4 cut(s)	360, 414, 523, 783
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	4 cut(s)	16, 310, 959, 973
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	177, 615, 684
LmnI	GCTCC	2 cut(s)	348, 356
Lsp1109I	GCAGC	5 cut(s)	103, 287, 820, 854, 857
LweI	GCATC	2 cut(s)	175, 688
MaeI	CTAG	7 cut(s)	125, 147, 279, 302, 347, 737, 906
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	5 cut(s)	7, 43, 287, 428, 574
MalI	GATC	3 cut(s)	179, 617, 686
MbiI	CCGCTC	1 cut(s)	919
MboI	GATC	3 cut(s)	177, 615, 684
MboII	GAAGA	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	237, 345
MluCI	AATT	5 cut(s)	50, 336, 458, 590, 849
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	7 cut(s)	10, 184, 355, 380, 409, 723, 757
MroXI	GAANNNNTTC	1 cut(s)	747
MseI	TTAA	6 cut(s)	53, 153, 393, 597, 797, 852
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	4 cut(s)	212, 506, 564, 879
MspR9I	CCNGG	3 cut(s)	213, 506, 672
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	7 cut(s)	113, 252, 272, 307, 356, 839, 842
NciI	CCSGG	2 cut(s)	213, 506
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	3 cut(s)	177, 615, 684
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	4 cut(s)	16, 310, 959, 973
NlaIV	GGNNCC	2 cut(s)	138, 562
NmuCI	GTSAC	3 cut(s)	7, 43, 428
OliI	CACNNNNGTG	1 cut(s)	377
PctI	GAATGC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	747
PfeI	GAWTC	4 cut(s)	484, 693, 767, 819
PfoI	TCCNGGA	1 cut(s)	211
PinAI	ACCGGT	1 cut(s)	563
PkrI	GCNGC	5 cut(s)	118, 277, 835, 844, 847
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Ppu21I	YACGTR	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	670
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	138, 562
PspPI	GGNCC	3 cut(s)	19, 503, 665
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	6 cut(s)	53, 153, 393, 597, 797, 852
SatI	GCNGC	5 cut(s)	117, 276, 834, 843, 846
Sau3AI	GATC	3 cut(s)	177, 615, 684
Sau96I	GGNCC	3 cut(s)	19, 503, 665
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	213, 506, 672
SduI	GDGCHC	2 cut(s)	237, 345
SfaNI	GCATC	2 cut(s)	175, 688
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
Sse9I	AATT	5 cut(s)	50, 336, 458, 590, 849
SsiI	CCGC	1 cut(s)	919
SspMI	CTAG	7 cut(s)	125, 147, 279, 302, 347, 737, 906
StyD4I	CCNGG	3 cut(s)	211, 504, 670
StyI	CCWWGG	2 cut(s)	12, 688
TaaI	ACNGT	3 cut(s)	223, 574, 629
TaiI	ACGT	1 cut(s)	430
TasI	AATT	5 cut(s)	50, 336, 458, 590, 849
TfiI	GAWTC	4 cut(s)	484, 693, 767, 819
Tru1I	TTAA	6 cut(s)	53, 153, 393, 597, 797, 852
Tru9I	TTAA	6 cut(s)	53, 153, 393, 597, 797, 852
TscAI	CASTG	3 cut(s)	256, 505, 766
TseFI	GTSAC	3 cut(s)	7, 43, 428
TseI	GCWGC	5 cut(s)	116, 275, 833, 842, 845
Tsp45I	GTSAC	3 cut(s)	7, 43, 428
TspDTI	ATGAA	6 cut(s)	17, 259, 476, 507, 697, 972
TspRI	CASTG	3 cut(s)	256, 505, 766
VpaK11BI	GGWCC	1 cut(s)	665
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	1 cut(s)	590
XmiI	GTMKAC	3 cut(s)	75, 366, 929
XmnI	GAANNNNTTC	1 cut(s)	747
XspI	CTAG	7 cut(s)	125, 147, 279, 302, 347, 737, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.