RLG00000025606

Cysteine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
47041274 .. 47043728
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025606

Sequence Viewer

Length: 969 bp
ATGGTGGGCCAATGTGCAATCAAGAAAGATGTCACCGAATTAATTGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGATGATGGGACCCTGCTCTAGTGTTAAAGACAGGATTGGACATAGTATGATCAAGGATGCGGAGGATAAAGGTCTAATAACTCCTGGAAAGACTGTTCTTGTTGAGCCCACAAGTGGTAACACTGGCATTGGATTAGCATTCATAGCAGCTAGCAAGGGTTACAAGCTGAAGCTAGTCATGCCATCAACATATAGTCTTGAAAGAAGAATTGTGCTCCTAGCATTTGGAGCTGAGGTATACCTCACAGATAAGAACAAAGGGATGAAGGGAGTACTTGATAAGGCCGAGGAGTTGCTCCGTGAGACGCCTGATAGTCATATGCTTCAGCAACTTGAAAATCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACTCAGCAGGGAAAGTTGATATCTTGGTTTCAGCGATAGGAACCGGTGGCACAGTAACCGGTATAGGGAAATTTCTTAAAGAGCAAAATCCAGAGATCAAGGTTTGCGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATGGAGGTCCACCTGGAAAGCATCTGATCCAAGGAATCGGTGCTGGCTTCATTCCTCAAGTTCTTGATGTTAGCCTGCTAGACGAAGTTATTCCTGTATCTGGTGAGGAATCTATTGAGACTGCTAAACTACTTGCCTTAAAAGAAGGTCTTTTGGTGGGAATCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCGAAAAGGCCGGAAAATGCCGGAAAACTAGTAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAAGCAGAAAACATGACATTTTGA

Protein Analysis

323

Amino Acids

34.24

Weight (kDa)

5.69

Isoelectric Point (pI)

22.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 11 - 298 3.9e-70 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 907
AccI GTMKAC 3 cut(s) 63, 354, 917
AciI CCGC 3 cut(s) 176, 615, 907
AclWI GGATC 1 cut(s) 667
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 2 cut(s) 305, 425
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 4 cut(s) 230, 573, 746, 899
AgeI ACCGGT 2 cut(s) 551, 566
AgsI TTSAA 3 cut(s) 317, 452, 646
AhlI ACTAGT 1 cut(s) 874
AjnI CCWGG 2 cut(s) 199, 658
AloI GAACNNNNNNTCC 2 cut(s) 195, 227
AluBI AGCT 6 cut(s) 95, 112, 266, 283, 289, 347
AluI AGCT 6 cut(s) 95, 112, 266, 283, 289, 347
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 3 cut(s) 413, 501, 758
AlwI GGATC 1 cut(s) 667
AoxI GGCC 4 cut(s) 7, 399, 490, 854
ApeKI GCWGC 5 cut(s) 104, 263, 821, 830, 833
ApoI RAATTY 1 cut(s) 578
AseI ATTAAT 1 cut(s) 41
AsiGI ACCGGT 2 cut(s) 551, 566
Asp700I GAANNNNTTC 1 cut(s) 735
AspS9I GGNCC 4 cut(s) 7, 125, 491, 653
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 25, 761
AsuNHI GCTAGC 1 cut(s) 266
AvaII GGWCC 2 cut(s) 125, 653
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 5 cut(s) 91, 275, 808, 842, 845
BccI CCATC 2 cut(s) 115, 307
BciT130I CCWGG 2 cut(s) 201, 660
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 413, 501, 758
BcuI ACTAGT 1 cut(s) 874
BfaI CTAG 7 cut(s) 113, 135, 267, 290, 335, 725, 875
BisI GCNGC 5 cut(s) 105, 264, 822, 831, 834
BlsI GCNGC 5 cut(s) 106, 265, 823, 832, 835
BmcAI AGTACT 1 cut(s) 390
Bme1390I CCNGG 3 cut(s) 201, 494, 660
Bme18I GGWCC 2 cut(s) 125, 653
BmgT120I GGNCC 4 cut(s) 7, 125, 491, 653
BmiI GGNNCC 3 cut(s) 126, 127, 550
BmrFI CCNGG 3 cut(s) 201, 494, 660
BmrI ACTGGG 1 cut(s) 888
BmsI GCATC 2 cut(s) 163, 676
BmtI GCTAGC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 888
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 687
BpuMI CCSGG 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 402, 676
BsaWI WCCGGW 2 cut(s) 551, 566
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 573, 746, 899
Bse118I RCCGGY 2 cut(s) 551, 566
Bse1I ACTGG 4 cut(s) 244, 493, 626, 894
BseBI CCWGG 2 cut(s) 201, 660
BseDI CCNNGG 2 cut(s) 402, 676
BseGI GGATG 2 cut(s) 178, 384
BseLI CCNNNNNNNGG 4 cut(s) 230, 573, 746, 899
BseMII CTCAG 2 cut(s) 339, 525
BseNI ACTGG 4 cut(s) 244, 493, 626, 894
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 5 cut(s) 91, 275, 808, 842, 845
BsgI GTGCAG 1 cut(s) 657
BshFI GGCC 4 cut(s) 9, 401, 492, 856
BshTI ACCGGT 2 cut(s) 551, 566
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 5 cut(s) 494, 552, 567, 857, 867
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 4 cut(s) 230, 573, 746, 899
BsmAI GTCTC 3 cut(s) 413, 501, 758
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 4 cut(s) 9, 401, 492, 856
Bsp1286I GDGCHC 2 cut(s) 225, 333
Bsp143I GATC 3 cut(s) 165, 603, 672
BspACI CCGC 3 cut(s) 176, 615, 907
BspANI GGCC 4 cut(s) 9, 401, 492, 856
BspCNI CTCAG 2 cut(s) 340, 524
BspLI GGNNCC 3 cut(s) 126, 127, 550
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 1 cut(s) 667
BsrBI CCGCTC 1 cut(s) 907
BsrFI RCCGGY 2 cut(s) 551, 566
BsrI ACTGG 4 cut(s) 244, 493, 626, 894
BssAI RCCGGY 2 cut(s) 551, 566
BssECI CCNNGG 2 cut(s) 402, 676
BssMI GATC 3 cut(s) 165, 603, 672
BssNAI GTATAC 2 cut(s) 64, 355
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 1 cut(s) 676
Bst1107I GTATAC 2 cut(s) 64, 355
Bst2UI CCWGG 2 cut(s) 201, 660
Bst4CI ACNGT 2 cut(s) 211, 562
BstACI GRCGYC 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 268, 691, 722
BstDEI CTNAG 2 cut(s) 348, 511
BstF5I GGATG 2 cut(s) 178, 384
BstKTI GATC 3 cut(s) 168, 606, 675
BstMAI GTCTC 3 cut(s) 413, 501, 758
BstMBI GATC 3 cut(s) 165, 603, 672
BstMWI GCNNNNNNNGC 6 cut(s) 101, 260, 295, 344, 827, 830
BstNI CCWGG 2 cut(s) 201, 660
BstSCI CCNGG 3 cut(s) 199, 492, 658
BstV1I GCAGC 5 cut(s) 91, 275, 808, 842, 845
BstZ17I GTATAC 2 cut(s) 64, 355
BsuRI GGCC 4 cut(s) 9, 401, 492, 856
BtsCI GGATG 2 cut(s) 178, 384
BtsIMutI CAGTG 2 cut(s) 237, 486
Cac8I GCNNGC 3 cut(s) 268, 691, 722
Cfr10I RCCGGY 2 cut(s) 551, 566
Cfr13I GGNCC 4 cut(s) 7, 125, 491, 653
CseI GACGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 389
CspAI ACCGGT 2 cut(s) 551, 566
CviAII CATG 3 cut(s) 295, 944, 958
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 348, 511
DpnI GATC 3 cut(s) 167, 605, 674
DpnII GATC 3 cut(s) 165, 603, 672
Eco130I CCWWGG 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 125, 653
Eco57I CTGAAG 2 cut(s) 305, 425
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 199, 658
EcoRV GATATC 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 676
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 3 cut(s) 298, 947, 961
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 294, 943, 957
FauNDI CATATG 1 cut(s) 435
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 3 cut(s) 63, 354, 917
Fnu4HI GCNGC 5 cut(s) 105, 264, 822, 831, 834
FokI GGATG 2 cut(s) 185, 391
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 5 cut(s) 105, 264, 822, 831, 834
FspBI CTAG 7 cut(s) 113, 135, 267, 290, 335, 725, 875
GluI GCNGC 5 cut(s) 105, 264, 822, 831, 834
HaeIII GGCC 4 cut(s) 9, 401, 492, 856
HapII CCGG 5 cut(s) 494, 552, 567, 857, 867
HgaI GACGC 1 cut(s) 430
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 3 cut(s) 298, 947, 961
HinfI GANTC 5 cut(s) 472, 509, 681, 755, 807
HpaII CCGG 5 cut(s) 494, 552, 567, 857, 867
HphI GGTGA 2 cut(s) 25, 761
Hpy166II GTNNAC 4 cut(s) 64, 355, 656, 918
Hpy188I TCNGA 1 cut(s) 672
Hpy188III TCNNGA 5 cut(s) 22, 314, 599, 643, 710
Hpy8I GTNNAC 4 cut(s) 64, 355, 656, 918
HpyAV CCTTC 3 cut(s) 77, 376, 785
HpyCH4III ACNGT 2 cut(s) 211, 562
HpyCH4V TGCA 3 cut(s) 17, 638, 824
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 260, 295, 344, 827, 830
HpyF3I CTNAG 2 cut(s) 348, 511
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 3 cut(s) 298, 947, 961
KflI GGGWCCC 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 3 cut(s) 165, 603, 672
LmnI GCTCC 3 cut(s) 336, 344, 417
Lsp1109I GCAGC 5 cut(s) 91, 275, 808, 842, 845
LweI GCATC 2 cut(s) 163, 676
MaeI CTAG 7 cut(s) 113, 135, 267, 290, 335, 725, 875
MaeIII GTNAC 4 cut(s) 31, 233, 275, 562
MalI GATC 3 cut(s) 167, 605, 674
MbiI CCGCTC 1 cut(s) 907
MboI GATC 3 cut(s) 165, 603, 672
MboII GAAGA 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 225, 333
MluCI AATT 4 cut(s) 38, 42, 324, 578
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 7 cut(s) 172, 343, 368, 397, 644, 711, 745
MroXI GAANNNNTTC 1 cut(s) 735
MseI TTAA 4 cut(s) 41, 141, 585, 785
MspI CCGG 5 cut(s) 494, 552, 567, 857, 867
MspR9I CCNGG 3 cut(s) 201, 494, 660
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 2 cut(s) 201, 660
MwoI GCNNNNNNNGC 6 cut(s) 101, 260, 295, 344, 827, 830
NciI CCSGG 1 cut(s) 494
NdeI CATATG 1 cut(s) 435
NdeII GATC 3 cut(s) 165, 603, 672
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 3 cut(s) 298, 947, 961
NlaIV GGNNCC 3 cut(s) 126, 127, 550
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 31
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 4 cut(s) 472, 681, 755, 807
PfoI TCCNGGA 1 cut(s) 199
PinAI ACCGGT 2 cut(s) 551, 566
PkrI GCNGC 5 cut(s) 106, 265, 823, 832, 835
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 199, 658
PspGI CCWGG 2 cut(s) 199, 658
PspN4I GGNNCC 3 cut(s) 126, 127, 550
PspPI GGNCC 4 cut(s) 7, 125, 491, 653
PspPPI RGGWCCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SaqAI TTAA 4 cut(s) 41, 141, 585, 785
SatI GCNGC 5 cut(s) 105, 264, 822, 831, 834
Sau3AI GATC 3 cut(s) 165, 603, 672
Sau96I GGNCC 4 cut(s) 7, 125, 491, 653
ScaI AGTACT 1 cut(s) 390
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 3 cut(s) 201, 494, 660
SduI GDGCHC 2 cut(s) 225, 333
SfaNI GCATC 2 cut(s) 163, 676
SinI GGWCC 2 cut(s) 125, 653
SmlI CTYRAG 1 cut(s) 702
SmoI CTYRAG 1 cut(s) 702
SpeI ACTAGT 1 cut(s) 874
Sse9I AATT 4 cut(s) 38, 42, 324, 578
SsiI CCGC 3 cut(s) 176, 615, 907
SspMI CTAG 7 cut(s) 113, 135, 267, 290, 335, 725, 875
StyD4I CCNGG 3 cut(s) 199, 492, 658
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 2 cut(s) 211, 562
TasI AATT 4 cut(s) 38, 42, 324, 578
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 4 cut(s) 472, 681, 755, 807
Tru1I TTAA 4 cut(s) 41, 141, 585, 785
Tru9I TTAA 4 cut(s) 41, 141, 585, 785
TscAI CASTG 2 cut(s) 244, 493
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 5 cut(s) 104, 263, 821, 830, 833
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 6 cut(s) 247, 395, 464, 495, 685, 960
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 244, 493
VpaK11BI GGWCC 2 cut(s) 125, 653
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 1 cut(s) 578
XmiI GTMKAC 3 cut(s) 63, 354, 917
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 7 cut(s) 113, 135, 267, 290, 335, 725, 875
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.