Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

2801310 .. 2805091

Gene Structure 3782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCTCTCGGTCTCTTTTCCGGTTTTCCCTCCATCGGCCCATTAATCGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGAATTGCTGCCAAGCTCGAGATGATGGAACCCTGCTGTAGTGTGAAAGACAGGATTGCATATAGTATGATCAAGGATGCAGAAGATAAAGGTCTAATAACTCCGGGGAAGACTGTTCTCATTGAGCCCACAAGTGGAAACACTGGCATTGGATTGGCATTCATCGCAGCAAGCAAGGGTTACAAGTTGAAGTTAGTCATGCCATCTGTAATGAGTCTTGAAAAAAGAATTGTGCTCTTAGCTTTTGGAGCTGAGGTTTACCTCACAGATTGGGCCAAAGGCTTTAAGGGAAGTCTTGATAAGGTTGAGGAGTTGCTACGTGACACACCTAATAGTCATACGCTTCAGCAATTTGAAAACCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACTCGGCTGGGAAAGTTGATATCTTGGTTTCGGGGATAGGAACTGGTGGTACAGTAACTGGTGTAGGGAAGTTTCTTAAAGAGCAAAATCCAGAGATCAAGGTTTACGGTGTAGAACCAATTGAGAGTGCAGTCTTGAATGGTGGTCCACCTGGGAAGCATCTGATCCAAGGACTTGGTGCTGGCATCATACCTCAAGTGCTCGATGTTAACCTGCCGGATAAAGTTATTACAGTATCCAGTGAGGAATCTATCGACACTGCTAGGCTGCTTGCCCTAAAAGAAGGTCTTTTGGTGGGGATCTCATCTGGTGCTGCAGCAGCAGTAGCAATAAAGTTGGCAAAGAAGCAGGAAAATGCTGGAAAACTAATAGTTGTCGTGTTCCCCAGTTTCGGAGAGCGTTATCTGTCTTCTCCACTTTTTGATACCATTAGGCATGAGGCAGAAAAAATGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

323

Amino Acids

34.44

Weight (kDa)

6.16

Isoelectric Point (pI)

24.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	14 - 299	6e-71	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	66
AclWI	GGATC	2 cut(s)	670, 818
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	4 cut(s)	35, 47, 233, 902
AgsI	TTSAA	4 cut(s)	289, 320, 455, 649
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	4 cut(s)	98, 115, 341, 350
AluI	AGCT	4 cut(s)	98, 115, 341, 350
Alw21I	GWGCWC	2 cut(s)	336, 714
Alw26I	GTCTC	3 cut(s)	9, 17, 504
AlwI	GGATC	2 cut(s)	670, 818
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	37, 372, 493
ApeKI	GCWGC	6 cut(s)	107, 266, 778, 824, 827, 830
AseI	ATTAAT	1 cut(s)	44
AspS9I	GGNCC	4 cut(s)	38, 372, 494, 656
AsuC2I	CCSGG	2 cut(s)	204, 497
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	656
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	2 cut(s)	215, 912
Bbv12I	GWGCWC	2 cut(s)	336, 714
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	6 cut(s)	94, 278, 765, 811, 839, 842
BccI	CCATC	3 cut(s)	41, 118, 310
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	1 cut(s)	757
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	2 cut(s)	204, 497
BcoDI	GTCTC	3 cut(s)	9, 17, 504
BfaI	CTAG	1 cut(s)	774
BfmI	CTRYAG	2 cut(s)	136, 825
BfuAI	ACCTGC	1 cut(s)	732
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	6 cut(s)	108, 267, 779, 825, 828, 831
BlsI	GCNGC	6 cut(s)	109, 268, 780, 826, 829, 832
Bme1390I	CCNGG	3 cut(s)	204, 497, 663
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	4 cut(s)	38, 372, 494, 656
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	3 cut(s)	204, 497, 663
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	3 cut(s)	166, 679, 705
BmuI	ACTGGG	1 cut(s)	891
BpiI	GAAGAC	2 cut(s)	215, 912
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	690
BpuMI	CCSGG	2 cut(s)	204, 497
BsaAI	YACGTR	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	203, 662, 679
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 47, 233, 902
Bse1I	ACTGG	6 cut(s)	247, 496, 559, 574, 750, 897
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	3 cut(s)	203, 662, 679
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	4 cut(s)	35, 47, 233, 902
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	6 cut(s)	247, 496, 559, 574, 750, 897
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	6 cut(s)	94, 278, 765, 811, 839, 842
BseYI	CCCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	660
BshFI	GGCC	3 cut(s)	39, 374, 495
BsiHKAI	GWGCWC	2 cut(s)	336, 714
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	21, 203, 497, 728
BslI	CCNNNNNNNGG	4 cut(s)	35, 47, 233, 902
BsmAI	GTCTC	3 cut(s)	9, 17, 504
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	39, 374, 495
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	228, 336, 714
Bsp143I	GATC	4 cut(s)	168, 606, 675, 810
BspANI	GGCC	3 cut(s)	39, 374, 495
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	732
BspPI	GGATC	2 cut(s)	670, 818
BspTNI	GGTCTC	1 cut(s)	17
BsrI	ACTGG	6 cut(s)	247, 496, 559, 574, 750, 897
BssECI	CCNNGG	3 cut(s)	203, 662, 679
BssMI	GATC	4 cut(s)	168, 606, 675, 810
BssNAI	GTATAC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	679
Bst1107I	GTATAC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	4 cut(s)	214, 565, 620, 745
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	271, 694, 783
BstDEI	CTNAG	2 cut(s)	337, 351
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	4 cut(s)	171, 609, 678, 813
BstMAI	GTCTC	3 cut(s)	9, 17, 504
BstMBI	GATC	4 cut(s)	168, 606, 675, 810
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 263, 347, 830, 836
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	3 cut(s)	202, 495, 661
BstSFI	CTRYAG	2 cut(s)	136, 825
BstV1I	GCAGC	6 cut(s)	94, 278, 765, 811, 839, 842
BstV2I	GAAGAC	2 cut(s)	215, 912
BstX2I	RGATCY	1 cut(s)	810
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	810
BstZ17I	GTATAC	1 cut(s)	67
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	39, 374, 495
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	4 cut(s)	240, 489, 757, 768
BveI	ACCTGC	1 cut(s)	732
Cac8I	GCNNGC	3 cut(s)	271, 694, 783
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr13I	GGNCC	4 cut(s)	38, 372, 494, 656
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	2 cut(s)	298, 947
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	337, 351
DpnI	GATC	4 cut(s)	170, 608, 677, 812
DpnII	GATC	4 cut(s)	168, 606, 675, 810
Eco130I	CCWWGG	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	661
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	2 cut(s)	301, 950
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FatI	CATG	2 cut(s)	297, 946
FbaI	TGATCA	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	6 cut(s)	108, 267, 779, 825, 828, 831
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	6 cut(s)	108, 267, 779, 825, 828, 831
FspBI	CTAG	1 cut(s)	774
GluI	GCNGC	6 cut(s)	108, 267, 779, 825, 828, 831
GsaI	CCCAGC	1 cut(s)	522
HaeIII	GGCC	3 cut(s)	39, 374, 495
HapII	CCGG	4 cut(s)	21, 203, 497, 728
Hin1II	CATG	2 cut(s)	301, 950
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	4 cut(s)	313, 475, 512, 758
HpaI	GTTAAC	1 cut(s)	721
HpaII	CCGG	4 cut(s)	21, 203, 497, 728
Hpy166II	GTNNAC	5 cut(s)	67, 358, 616, 659, 721
Hpy188I	TCNGA	3 cut(s)	50, 675, 905
Hpy188III	TCNNGA	5 cut(s)	118, 317, 395, 602, 646
Hpy8I	GTNNAC	5 cut(s)	67, 358, 616, 659, 721
HpyAV	CCTTC	2 cut(s)	80, 788
HpyCH4III	ACNGT	4 cut(s)	214, 565, 620, 745
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	4 cut(s)	158, 179, 641, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 263, 347, 830, 836
HpyF3I	CTNAG	2 cut(s)	337, 351
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	2 cut(s)	301, 950
Ksp22I	TGATCA	1 cut(s)	168
KspAI	GTTAAC	1 cut(s)	721
Kzo9I	GATC	4 cut(s)	168, 606, 675, 810
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	6 cut(s)	94, 278, 765, 811, 839, 842
LweI	GCATC	3 cut(s)	166, 679, 705
MaeI	CTAG	1 cut(s)	774
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	3 cut(s)	278, 419, 565
MalI	GATC	4 cut(s)	170, 608, 677, 812
MboI	GATC	4 cut(s)	168, 606, 675, 810
MboII	GAAGA	3 cut(s)	194, 220, 912
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	810
MhlI	GDGCHC	3 cut(s)	228, 336, 714
MluCI	AATT	4 cut(s)	102, 327, 449, 630
MlyI	GAGTC	2 cut(s)	322, 506
MnlI	CCTC	7 cut(s)	40, 346, 371, 400, 714, 748, 943
MseI	TTAA	4 cut(s)	44, 384, 588, 720
MspI	CCGG	4 cut(s)	21, 203, 497, 728
MspR9I	CCNGG	3 cut(s)	204, 497, 663
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	5 cut(s)	104, 263, 347, 830, 836
NciI	CCSGG	2 cut(s)	204, 497
NdeII	GATC	4 cut(s)	168, 606, 675, 810
NlaIII	CATG	2 cut(s)	301, 950
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	116
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	475, 758
PkrI	GCNGC	6 cut(s)	109, 268, 780, 826, 829, 832
PleI	GAGTC	2 cut(s)	321, 506
PpsI	GAGTC	2 cut(s)	321, 506
Ppu21I	YACGTR	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	4 cut(s)	38, 372, 494, 656
PsrI	GAACNNNNNNTAC	2 cut(s)	544, 576
PstI	CTGCAG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	810
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SaqAI	TTAA	4 cut(s)	44, 384, 588, 720
SatI	GCNGC	6 cut(s)	108, 267, 779, 825, 828, 831
Sau3AI	GATC	4 cut(s)	168, 606, 675, 810
Sau96I	GGNCC	4 cut(s)	38, 372, 494, 656
SchI	GAGTC	2 cut(s)	322, 506
ScrFI	CCNGG	3 cut(s)	204, 497, 663
SduI	GDGCHC	3 cut(s)	228, 336, 714
SfaNI	GCATC	3 cut(s)	166, 679, 705
SfcI	CTRYAG	2 cut(s)	136, 825
Sfr274I	CTCGAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	116, 705
SmoI	CTYRAG	2 cut(s)	116, 705
Sse9I	AATT	4 cut(s)	102, 327, 449, 630
SspMI	CTAG	1 cut(s)	774
StyD4I	CCNGG	3 cut(s)	202, 495, 661
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	4 cut(s)	214, 565, 620, 745
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	4 cut(s)	100, 117, 714, 765
TasI	AATT	4 cut(s)	102, 327, 449, 630
TfiI	GAWTC	2 cut(s)	475, 758
Tru1I	TTAA	4 cut(s)	44, 384, 588, 720
Tru9I	TTAA	4 cut(s)	44, 384, 588, 720
TscAI	CASTG	4 cut(s)	247, 496, 757, 775
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	6 cut(s)	107, 266, 778, 824, 827, 830
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	250, 467, 498
TspRI	CASTG	4 cut(s)	247, 496, 757, 775
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.