Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Reverse (-)

2961972 .. 2964309

Gene Structure 2338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGTTAATCGGAAATACCCCAATGGTATATCTCAACAACGTCGTGGACGGCTGTGTAGCCAGAATTGCTGCCAAGCTAGAGATAATGGAACCTTGCTCTAGTACTGTTCTTATTGAGCCTACAAGTGGCAACACTGGCATTGGATTGGCATTCATTGCCGCAACCAAGGGCTACAAGCTTAAGCTAAGCATGCCATCTATAGTGAGTCTTGAAAGAAGAATTGTGCTCCGAGCTTTTGGAGCTGAGGTCTTCATCACAGATCCTGCTAAGGGATTTAAGGGAGTTCTTGCTAAGGCAGATGAGCTGCTAAGCAACACACCTAATAGCTTTATGCTTCAACAGTTTGAAAACCCTGCCAATCCAGAGGTTCATTATGAAACCACTGGCCCAGAGATATGGAGAGACTCGGGAGGGAAAGTTGATGTCTTGGTTTCAGGGATAGGGACTGGGGGTACTGTAACCGGTGCAGGGAGTTTCCTCAAAGAGCAAAATCCAGATATCAAGGTGTATGGTGTAGAACCAGCTGAAAGTGCAATATTGAATGGCGGCAAACCTGGGATGCATCTGATCCAAGGAATTGGTGCTGGTTTCATACCTCAAGTTCTGGATGTTAGCTTGCTGGATGAAGTTATTCAAGTATCCAGTGAGGAAGCAATTGAAACTGCTAAGCTGCTTGCACTAAAAGAAGGTCTTTTGGTGGGAATTTCATCTGGTGCTGCTGCAGCAGCAGCAATAAAGTTGGCAAAGAAGCAAGAAAATGCTGGAAAACTGATAGTTGTTGTGTTCGCCAGTTCTGGAGAGCGCTACCTGTCTTCGCCACTCTTCGATACCATTAGGCATGAGGCAGAAAATATGAAGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

289

Amino Acids

30.5

Weight (kDa)

5.11

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	35 - 263	5e-59	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	162, 549
AclWI	GGATC	2 cut(s)	257, 565
AcsI	RAATTY	1 cut(s)	705
AfaI	GTAC	2 cut(s)	106, 457
AfeI	AGCGCT	1 cut(s)	806
AfiI	CCNNNNNNNGG	3 cut(s)	128, 272, 471
AflII	CTTAAG	1 cut(s)	182
AgeI	ACCGGT	1 cut(s)	464
AgsI	TTSAA	7 cut(s)	215, 341, 350, 544, 638, 662, 866
AjnI	CCWGG	1 cut(s)	556
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	257, 565
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	409
Aor51HI	AGCGCT	1 cut(s)	806
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	8 cut(s)	71, 307, 673, 719, 722, 725, 728, 731
ApoI	RAATTY	1 cut(s)	705
AsiGI	ACCGGT	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	409
BbsI	GAAGAC	2 cut(s)	244, 807
Bbv12I	GWGCWC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	8 cut(s)	58, 294, 660, 706, 709, 737, 740, 743
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	558
BciVI	GTATCC	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	2 cut(s)	80, 102
BfmI	CTRYAG	2 cut(s)	201, 723
BfoI	RGCGCY	1 cut(s)	808
BfrI	CTTAAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	652
BlpI	GCTNAGC	3 cut(s)	188, 311, 669
BmcAI	AGTACT	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	558
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	552, 574
BmuI	ACTGGG	1 cut(s)	459
BpiI	GAAGAC	2 cut(s)	244, 807
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	3 cut(s)	246, 270, 294
Bpu1102I	GCTNAGC	3 cut(s)	188, 311, 669
BpuEI	CTTGAG	1 cut(s)	585
BsaJI	CCNNGG	3 cut(s)	168, 557, 574
BsaWI	WCCGGW	1 cut(s)	464
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 272, 471
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	5 cut(s)	142, 391, 454, 645, 792
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	3 cut(s)	168, 557, 574
BseGI	GGATG	3 cut(s)	567, 616, 631
BseLI	CCNNNNNNNGG	3 cut(s)	128, 272, 471
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	5 cut(s)	142, 391, 454, 645, 792
BseXI	GCAGC	8 cut(s)	58, 294, 660, 706, 709, 737, 740, 743
BsgI	GTGCAG	1 cut(s)	489
BshFI	GGCC	1 cut(s)	390
BshTI	ACCGGT	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	3 cut(s)	128, 272, 471
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	390
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	262, 570
Bsp1720I	GCTNAGC	3 cut(s)	188, 311, 669
BspACI	CCGC	2 cut(s)	162, 549
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	2 cut(s)	257, 565
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	5 cut(s)	142, 391, 454, 645, 792
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	168, 557, 574
BssMI	GATC	2 cut(s)	262, 570
BssT1I	CCWWGG	2 cut(s)	168, 574
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	109, 345, 460
Bst6I	CTCTTC	1 cut(s)	830
BstAFI	CTTAAG	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	194, 620, 678
BstDEI	CTNAG	6 cut(s)	188, 246, 270, 294, 311, 669
BstF5I	GGATG	3 cut(s)	567, 616, 631
BstH2I	RGCGCY	1 cut(s)	808
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	2 cut(s)	265, 573
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	262, 570
BstMWI	GCNNNNNNNGC	9 cut(s)	68, 138, 158, 193, 242, 533, 725, 728, 731
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	2 cut(s)	201, 723
BstV1I	GCAGC	8 cut(s)	58, 294, 660, 706, 709, 737, 740, 743
BstV2I	GAAGAC	2 cut(s)	244, 807
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	2 cut(s)	399, 581
BstYI	RGATCY	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	567, 616, 631
BtsIMutI	CAGTG	3 cut(s)	135, 384, 652
Cac8I	GCNNGC	3 cut(s)	194, 620, 678
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	1 cut(s)	807
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	389
Csp6I	GTAC	2 cut(s)	105, 456
CspAI	ACCGGT	1 cut(s)	464
CviAII	CATG	2 cut(s)	193, 842
CviQI	GTAC	2 cut(s)	105, 456
DdeI	CTNAG	6 cut(s)	188, 246, 270, 294, 311, 669
DpnI	GATC	2 cut(s)	264, 572
DpnII	GATC	2 cut(s)	262, 570
Eam1104I	CTCTTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	830
Eco130I	CCWWGG	2 cut(s)	168, 574
Eco32I	GATATC	1 cut(s)	502
Eco47III	AGCGCT	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	168, 574
EcoT22I	ATGCAT	1 cut(s)	567
ErhI	CCWWGG	2 cut(s)	168, 574
FaeI	CATG	2 cut(s)	196, 845
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	2 cut(s)	192, 841
FokI	GGATG	3 cut(s)	574, 623, 638
FspBI	CTAG	2 cut(s)	80, 102
GlaI	GCGC	1 cut(s)	806
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	808
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	1 cut(s)	465
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	2 cut(s)	196, 845
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	2 cut(s)	208, 407
HpaII	CCGG	1 cut(s)	465
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	14, 233, 570
Hpy188III	TCNNGA	6 cut(s)	212, 365, 411, 497, 608, 798
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	3 cut(s)	109, 345, 460
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	470, 536, 565, 680, 725
HpyF10VI	GCNNNNNNNGC	9 cut(s)	68, 138, 158, 193, 242, 533, 725, 728, 731
HpyF3I	CTNAG	6 cut(s)	188, 246, 270, 294, 311, 669
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	196, 845
HspAI	GCGC	1 cut(s)	805
Kzo9I	GATC	2 cut(s)	262, 570
LmnI	GCTCC	2 cut(s)	234, 242
Lsp1109I	GCAGC	8 cut(s)	58, 294, 660, 706, 709, 737, 740, 743
LweI	GCATC	2 cut(s)	552, 574
MaeI	CTAG	2 cut(s)	80, 102
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	2 cut(s)	264, 572
MboI	GATC	2 cut(s)	262, 570
MboII	GAAGA	4 cut(s)	231, 244, 807, 817
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	5 cut(s)	66, 222, 579, 657, 705
MlyI	GAGTC	2 cut(s)	217, 401
MnlI	CCTC	7 cut(s)	241, 361, 407, 491, 609, 643, 838
Mph1103I	ATGCAT	1 cut(s)	567
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	3 cut(s)	8, 183, 279
MspA1I	CMGCKG	1 cut(s)	527
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	9 cut(s)	68, 138, 158, 193, 242, 533, 725, 728, 731
NdeII	GATC	2 cut(s)	262, 570
NlaIII	CATG	2 cut(s)	196, 845
NlaIV	GGNNCC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	567
NspI	RCATGY	1 cut(s)	196
PaeI	GCATGC	1 cut(s)	196
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	633
PinAI	ACCGGT	1 cut(s)	464
PleI	GAGTC	2 cut(s)	216, 401
PpsI	GAGTC	2 cut(s)	216, 401
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	2 cut(s)	106, 457
RsaNI	GTAC	2 cut(s)	105, 456
SaqAI	TTAA	3 cut(s)	8, 183, 279
Sau3AI	GATC	2 cut(s)	262, 570
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	106
SchI	GAGTC	2 cut(s)	217, 401
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	552, 574
SfcI	CTRYAG	2 cut(s)	201, 723
SmlI	CTYRAG	2 cut(s)	182, 600
SmoI	CTYRAG	2 cut(s)	182, 600
SphI	GCATGC	1 cut(s)	196
Sse9I	AATT	5 cut(s)	66, 222, 579, 657, 705
SsiI	CCGC	2 cut(s)	162, 549
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	2 cut(s)	80, 102
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	168, 574
TaaI	ACNGT	3 cut(s)	109, 345, 460
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	828
TasI	AATT	5 cut(s)	66, 222, 579, 657, 705
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	2 cut(s)	164, 552
Tru1I	TTAA	3 cut(s)	8, 183, 279
Tru9I	TTAA	3 cut(s)	8, 183, 279
TscAI	CASTG	3 cut(s)	142, 391, 652
TseI	GCWGC	8 cut(s)	71, 307, 673, 719, 722, 725, 728, 731
TspDTI	ATGAA	7 cut(s)	145, 244, 362, 393, 583, 642, 699
TspRI	CASTG	3 cut(s)	142, 391, 652
Vha464I	CTTAAG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	2 cut(s)	80, 102
ZrmI	AGTACT	1 cut(s)	106
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.