Rh3DG042700

Cysteine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
2786803 .. 2789237
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG042700.1

Sequence Viewer

Length: 972 bp
ATGGAGGACTCATGCGCAATCAAGAACGATGTCACTGAATTAATCGGAAATACCCCAATGGTATATCTCAACAACGTCGTGGACGGTTGTGTAGCCAGAATTGCTGCCAAGCTAGAGATAATGGAACCTTGCTCTAGTGTAAAAGACAGGATCGCATATAGCATGATCAAGGATGCAGAGGATAAGGGTCTAATTACGCCAGGGAAGACTGTTCTTATTGAGCCTACAAGTGGCAACACTGGCATTGGATTGGCATTCATTGCCGCAACCAAGGGCTACAAGCTTAAGCTAAGCATGCCATCTATAGTGAGTCTTGAAAGAAGAATTGTGCTCCGAGCTTTTGGAGCTGAGGTCTTCATCACAGATCCTGCTAAGGGATTTAAGGGAGTTCTTGCTAAGGCAGATGAGCTGCTAAGCAACACACCTAATAGCTTTATGCTTCAACAGTTTGAAAACCCTGCCAATCCAGAGGTTCATTATGAAACCACTGGCCCAGAGATATGGAGAGACTCGGGAGGGAAAGTTGATGTCTTGGTTTCAGGGATAGGGACCGGGGGTACGGTAACCGGTGCAGGGAGTTTCCTCAAAGAGCAAAATCCAGATATCAAGGTGTATGGTGTAGAACCAGCTGAAAGTGCAATATTGAATGGCGGCAAACCAGGGATGCATCTGATCCAAGGAATTGGTGCTGGTTTCATACCTCAAGTTCTGGATGTTAGCTTGCTGGATGAAGTTATTCAAGTATCCAGTGAGGAAGCAATTGAAAATGCTAAGCTGCTTGCACTAAAAGAAGGTCTTTTGGTGGGAATTTCATCTGGTGCTGCTGCAGCAGCAGCAATAAAGTTGGCAAAGAAGCAAGAAAATGCTGGAAAACTGATAGTTGTTGTGTTCGCCAGTTCTGGAGAGCGATACCTGTCTTCGCCACTCTTCGATACCATTAGGCATGAGGCAGAAAATATGAAGTTTGAATGA

Protein Analysis

323

Amino Acids

34.22

Weight (kDa)

5.09

Isoelectric Point (pI)

23.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 11 - 297 8.9e-73 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis pycom04g19410 pycom04g19420
rosa_chinensis RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 16
AciI CCGC 2 cut(s) 264, 651
AclWI GGATC 3 cut(s) 158, 359, 667
AcsI RAATTY 1 cut(s) 807
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 3 cut(s) 230, 374, 573
AflII CTTAAG 1 cut(s) 284
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 7 cut(s) 317, 443, 452, 646, 740, 764, 968
AjnI CCWGG 2 cut(s) 199, 658
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 3 cut(s) 158, 359, 667
AlwNI CAGNNNCTG 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 8 cut(s) 104, 409, 775, 821, 824, 827, 830, 833
ApoI RAATTY 1 cut(s) 807
AseI ATTAAT 1 cut(s) 41
AsiGI ACCGGT 1 cut(s) 566
Asp700I GAANNNNTTC 1 cut(s) 735
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 491, 549
AsuC2I CCSGG 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 511
AvaII GGWCC 1 cut(s) 549
BbsI GAAGAC 3 cut(s) 212, 346, 909
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 8 cut(s) 91, 396, 762, 808, 811, 839, 842, 845
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 2 cut(s) 201, 660
BciVI GTATCC 1 cut(s) 754
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 2 cut(s) 113, 135
BfmI CTRYAG 2 cut(s) 303, 825
BfrI CTTAAG 1 cut(s) 284
BfuI GTATCC 1 cut(s) 754
BlpI GCTNAGC 3 cut(s) 290, 413, 771
Bme1390I CCNGG 3 cut(s) 201, 553, 660
Bme18I GGWCC 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 2 cut(s) 491, 549
BmiI GGNNCC 2 cut(s) 126, 550
BmrFI CCNGG 3 cut(s) 201, 553, 660
BmsI GCATC 3 cut(s) 163, 654, 676
BpiI GAAGAC 3 cut(s) 212, 346, 909
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 3 cut(s) 348, 372, 396
Bpu1102I GCTNAGC 3 cut(s) 290, 413, 771
BpuEI CTTGAG 1 cut(s) 687
BpuMI CCSGG 1 cut(s) 553
BsaJI CCNNGG 5 cut(s) 200, 270, 552, 659, 676
BsaWI WCCGGW 1 cut(s) 566
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 507, 537
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 374, 573
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 4 cut(s) 244, 493, 747, 894
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 2 cut(s) 201, 660
BseDI CCNNGG 5 cut(s) 200, 270, 552, 659, 676
BseGI GGATG 4 cut(s) 178, 669, 718, 733
BseLI CCNNNNNNNGG 3 cut(s) 230, 374, 573
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 4 cut(s) 244, 493, 747, 894
BseXI GCAGC 8 cut(s) 91, 396, 762, 808, 811, 839, 842, 845
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 1 cut(s) 492
BshTI ACCGGT 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 2 cut(s) 552, 567
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 3 cut(s) 230, 374, 573
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 562
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 150, 165, 364, 672
Bsp1720I GCTNAGC 3 cut(s) 290, 413, 771
BspACI CCGC 2 cut(s) 264, 651
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 126, 550
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 3 cut(s) 158, 359, 667
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 4 cut(s) 244, 493, 747, 894
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 5 cut(s) 200, 270, 552, 659, 676
BssMI GATC 4 cut(s) 150, 165, 364, 672
BssT1I CCWWGG 2 cut(s) 270, 676
Bst2UI CCWGG 2 cut(s) 201, 660
Bst4CI ACNGT 4 cut(s) 86, 211, 447, 562
Bst6I CTCTTC 1 cut(s) 932
BstAFI CTTAAG 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 296, 722, 780
BstDEI CTNAG 6 cut(s) 290, 348, 372, 396, 413, 771
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 4 cut(s) 178, 669, 718, 733
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 4 cut(s) 153, 168, 367, 675
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 4 cut(s) 150, 165, 364, 672
BstMWI GCNNNNNNNGC 9 cut(s) 101, 240, 260, 295, 344, 635, 827, 830, 833
BstNI CCWGG 2 cut(s) 201, 660
BstNSI RCATGY 1 cut(s) 298
BstPI GGTNACC 1 cut(s) 562
BstSCI CCNGG 3 cut(s) 199, 551, 658
BstSFI CTRYAG 2 cut(s) 303, 825
BstV1I GCAGC 8 cut(s) 91, 396, 762, 808, 811, 839, 842, 845
BstV2I GAAGAC 3 cut(s) 212, 346, 909
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 2 cut(s) 501, 683
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 754
BsuRI GGCC 1 cut(s) 492
BtsCI GGATG 4 cut(s) 178, 669, 718, 733
BtsIMutI CAGTG 4 cut(s) 33, 237, 486, 754
Cac8I GCNNGC 3 cut(s) 296, 722, 780
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 2 cut(s) 491, 549
Csp6I GTAC 1 cut(s) 558
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 4 cut(s) 12, 163, 295, 944
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 6 cut(s) 290, 348, 372, 396, 413, 771
DpnI GATC 4 cut(s) 152, 167, 366, 674
DpnII GATC 4 cut(s) 150, 165, 364, 672
Eam1104I CTCTTC 1 cut(s) 932
EarI CTCTTC 1 cut(s) 932
Eco130I CCWWGG 2 cut(s) 270, 676
Eco32I GATATC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 511
Eco91I GGTNACC 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 199, 658
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 2 cut(s) 270, 676
EcoT22I ATGCAT 1 cut(s) 669
ErhI CCWWGG 2 cut(s) 270, 676
FaeI CATG 4 cut(s) 15, 166, 298, 947
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 1 cut(s) 562
FatI CATG 4 cut(s) 11, 162, 294, 943
FbaI TGATCA 1 cut(s) 165
FokI GGATG 4 cut(s) 185, 676, 725, 740
FspBI CTAG 2 cut(s) 113, 135
FspI TGCGCA 1 cut(s) 16
GlaI GCGC 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 1 cut(s) 492
HapII CCGG 2 cut(s) 552, 567
HhaI GCGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 15, 166, 298, 947
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 8, 310, 509
HpaII CCGG 2 cut(s) 552, 567
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 47, 335, 672
Hpy188III TCNNGA 7 cut(s) 22, 314, 467, 513, 599, 710, 900
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 785
HpyCH4III ACNGT 4 cut(s) 86, 211, 447, 562
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 6 cut(s) 176, 572, 638, 667, 782, 827
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 240, 260, 295, 344, 635, 827, 830, 833
HpyF3I CTNAG 6 cut(s) 290, 348, 372, 396, 413, 771
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 15, 166, 298, 947
HspAI GCGC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 4 cut(s) 150, 165, 364, 672
LmnI GCTCC 2 cut(s) 336, 344
Lsp1109I GCAGC 8 cut(s) 91, 396, 762, 808, 811, 839, 842, 845
LweI GCATC 3 cut(s) 163, 654, 676
MaeI CTAG 2 cut(s) 113, 135
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 31, 562
MalI GATC 4 cut(s) 152, 167, 366, 674
MboI GATC 4 cut(s) 150, 165, 364, 672
MboII GAAGA 5 cut(s) 217, 333, 346, 909, 919
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 7 cut(s) 38, 99, 192, 324, 681, 759, 807
MlyI GAGTC 3 cut(s) 2, 319, 503
MnlI CCTC 8 cut(s) 172, 343, 463, 509, 593, 711, 745, 940
Mph1103I ATGCAT 1 cut(s) 669
MroXI GAANNNNTTC 1 cut(s) 735
MseI TTAA 3 cut(s) 41, 285, 381
MspA1I CMGCKG 1 cut(s) 629
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 552, 567
MspR9I CCNGG 3 cut(s) 201, 553, 660
MunI CAATTG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 2 cut(s) 201, 660
MwoI GCNNNNNNNGC 9 cut(s) 101, 240, 260, 295, 344, 635, 827, 830, 833
NciI CCSGG 1 cut(s) 553
NdeII GATC 4 cut(s) 150, 165, 364, 672
NlaIII CATG 4 cut(s) 15, 166, 298, 947
NlaIV GGNNCC 2 cut(s) 126, 550
NmuCI GTSAC 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 1 cut(s) 298
PaeI GCATGC 1 cut(s) 298
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 735
PinAI ACCGGT 1 cut(s) 566
PleI GAGTC 3 cut(s) 2, 318, 503
PpsI GAGTC 3 cut(s) 2, 318, 503
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 199, 658
PspEI GGTNACC 1 cut(s) 562
PspGI CCWGG 2 cut(s) 199, 658
PspN4I GGNNCC 2 cut(s) 126, 550
PspPI GGNCC 2 cut(s) 491, 549
PstI CTGCAG 1 cut(s) 829
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SaqAI TTAA 3 cut(s) 41, 285, 381
Sau3AI GATC 4 cut(s) 150, 165, 364, 672
Sau96I GGNCC 2 cut(s) 491, 549
SchI GAGTC 3 cut(s) 2, 319, 503
ScrFI CCNGG 3 cut(s) 201, 553, 660
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 3 cut(s) 163, 654, 676
SfcI CTRYAG 2 cut(s) 303, 825
SinI GGWCC 1 cut(s) 549
SmlI CTYRAG 2 cut(s) 284, 702
SmoI CTYRAG 2 cut(s) 284, 702
SphI GCATGC 1 cut(s) 298
Sse9I AATT 7 cut(s) 38, 99, 192, 324, 681, 759, 807
SsiI CCGC 2 cut(s) 264, 651
SspI AATATT 1 cut(s) 642
SspMI CTAG 2 cut(s) 113, 135
StyD4I CCNGG 3 cut(s) 199, 551, 658
StyI CCWWGG 2 cut(s) 270, 676
TaaI ACNGT 4 cut(s) 86, 211, 447, 562
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 930
TasI AATT 7 cut(s) 38, 99, 192, 324, 681, 759, 807
TauI GCSGC 2 cut(s) 266, 654
Tru1I TTAA 3 cut(s) 41, 285, 381
Tru9I TTAA 3 cut(s) 41, 285, 381
TscAI CASTG 4 cut(s) 40, 244, 493, 754
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 8 cut(s) 104, 409, 775, 821, 824, 827, 830, 833
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 7 cut(s) 247, 346, 464, 495, 685, 744, 801
TspRI CASTG 4 cut(s) 40, 244, 493, 754
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 549
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 1 cut(s) 807
XceI RCATGY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 2 cut(s) 113, 135
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.