Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004970

Physical Location & Seq

Genomic Coordinates Forward (+)

51837798 .. 51838598

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G025270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGACATTATTATGGGTTTGTAGAAGAGCTGTTCCCCTTCTAGATGCATATCCCAATTATAATTTAAATGGCGGTAGTACTGTATACCAGAGGCATTTTGGCCATGATAATAGAATCCAGCAACTTTATTCTACTCAGGCATCCACACAAGAGAAATCACGCAAGATGCTAGTGTACCTTACGGGTTTGGTTTTTGCAATGGTTGCAGCCAGTTATGCAGCAGTTCCTCTCTACAGAAGATTCTGCCAAGCTACTGGGTATGGTGGCACTATCCAACGCCGTGAGAGTGTTGAACAGAAGATTGCCCGACATGCTAAGGACGGCACGGTCACCACAAGAGAGATTGTGGTGCAATTCAATGCTGATGTGGCCGATGGAATGCAATGGAAGTTCACTCCTACCCAAAGAGAGGTAAGGGTCAAACCTGGTGAAAGTGCACTTGCTTTTTATACCGCTGAAAATCGAAGTTCAACTGCAATAGTTGGTGTCTCTACATACAATGTTACCCCAATGAAGGCTGCAGTTTACTTCAATAAAATACAGTGCTTTTGCTTTGAGGAGCAGCGCCTTCTTCCTGGGGAGCAGATTGATATGCCTGTGTTCTTTTATATCGACCCTGAGTTTGAAACAGATCCAAGAATGGATGGTATCAATAACATAATTTTGTCCTATACCTTTTTCAAGGTTTCAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

232

Amino Acids

26.48

Weight (kDa)

8.29

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CtaG_Cox11	PF04442	74 - 228	5.3e-61	Cytochrome c oxidase assembly protein CtaG/Cox11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02410 AT1G02410 AT1G02410
malus_domestica	MD02G1272100.v1.1 MD07G1041100.v1.1
prunus_persica	Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1
pyrus_communis	pycom02g23270 pycom07g02850
rosa_chinensis	RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351
rosa_laevigata	RLG00000025608 RLG00000027871
rosa_multiflora	Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007
rosa_roxburghii	Rroxscaffold_4G00297020
rosa_rugosa	Rorug01G0271100 Rorug02G0640300
rosa_samantha	Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200
rosa_wichuraiana	Rw1G025270 Rw3G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AasI	GACNNNNNNGTC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	2 cut(s)	72, 453
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	2 cut(s)	100, 369
AfaI	GTAC	2 cut(s)	79, 176
AfiI	CCNNNNNNNGG	2 cut(s)	409, 514
AgsI	TTSAA	6 cut(s)	293, 358, 471, 532, 626, 682
AjnI	CCWGG	2 cut(s)	424, 574
AluBI	AGCT	2 cut(s)	29, 251
AluI	AGCT	2 cut(s)	29, 251
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	493
Alw44I	GTGCAC	1 cut(s)	435
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	2 cut(s)	100, 369
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	4 cut(s)	206, 218, 518, 562
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AspLEI	GCGC	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	322, 440
BaeGI	GKGCMC	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	4 cut(s)	218, 230, 505, 574
BccI	CCATC	2 cut(s)	368, 638
BceAI	ACGGC	2 cut(s)	264, 337
BciT130I	CCWGG	2 cut(s)	426, 576
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	41, 170
BfmI	CTRYAG	2 cut(s)	232, 519
BfoI	RGCGCY	1 cut(s)	568
BisI	GCNGC	4 cut(s)	207, 219, 519, 563
BlsI	GCNGC	4 cut(s)	208, 220, 520, 564
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	2 cut(s)	426, 576
BmrFI	CCNGG	2 cut(s)	426, 576
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	3 cut(s)	34, 149, 156
BmuI	ACTGGG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 514
Bse1I	ACTGG	2 cut(s)	210, 259
Bse3DI	GCAATG	2 cut(s)	204, 389
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	426, 576
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	2 cut(s)	140, 649
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	409, 514
BseMI	GCAATG	2 cut(s)	204, 389
BseMII	CTCAG	2 cut(s)	149, 609
BseNI	ACTGG	2 cut(s)	210, 259
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	4 cut(s)	218, 230, 505, 574
BshFI	GGCC	2 cut(s)	102, 371
BsiHKAI	GWGCWC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	409, 514
BsmAI	GTCTC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	102, 371
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	631
BspACI	CCGC	2 cut(s)	72, 453
BspANI	GGCC	2 cut(s)	102, 371
BspCNI	CTCAG	2 cut(s)	148, 610
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	1 cut(s)	626
BspQI	GCTCTTC	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	204, 389
BsrI	ACTGG	2 cut(s)	210, 259
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	1 cut(s)	631
BssNAI	GTATAC	1 cut(s)	85
Bst1107I	GTATAC	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	426, 576
Bst4CI	ACNGT	3 cut(s)	82, 328, 543
Bst6I	CTCTTC	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	135, 315, 618
BstEII	GGTNACC	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	140, 649
BstH2I	RGCGCY	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	1 cut(s)	634
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	631
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 215, 311, 368
BstNI	CCWGG	2 cut(s)	426, 576
BstNSI	RCATGY	1 cut(s)	314
BstPI	GGTNACC	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	424, 574
BstSFI	CTRYAG	2 cut(s)	232, 519
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	4 cut(s)	218, 230, 505, 574
BstX2I	RGATCY	1 cut(s)	631
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	102, 371
BtsCI	GGATG	2 cut(s)	140, 649
BtsIMutI	CAGTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	567
CsiI	ACCWGGT	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	78, 175
CviAII	CATG	2 cut(s)	104, 311
CviJI	RGCY	6 cut(s)	29, 102, 209, 251, 371, 518
CviKI_1	RGCY	6 cut(s)	29, 102, 209, 251, 371, 518
CviQI	GTAC	2 cut(s)	78, 175
DdeI	CTNAG	3 cut(s)	135, 315, 618
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
DraI	TTTAAA	1 cut(s)	66
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	100, 369
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	328
EcoO65I	GGTNACC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	424, 574
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	2 cut(s)	107, 314
FatI	CATG	2 cut(s)	103, 310
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	207, 219, 519, 563
FokI	GGATG	2 cut(s)	127, 656
Fsp4HI	GCNGC	4 cut(s)	207, 219, 519, 563
FspBI	CTAG	2 cut(s)	41, 170
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	4 cut(s)	207, 219, 519, 563
HaeII	RGCGCY	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	102, 371
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	2 cut(s)	107, 314
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HinfI	GANTC	2 cut(s)	114, 240
HphI	GGTGA	2 cut(s)	322, 440
Hpy166II	GTNNAC	5 cut(s)	85, 175, 393, 437, 526
Hpy188I	TCNGA	1 cut(s)	691
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	5 cut(s)	85, 175, 393, 437, 526
HpyAV	CCTTC	3 cut(s)	47, 508, 578
HpyCH4III	ACNGT	3 cut(s)	82, 328, 543
HpyCH4V	TGCA	9 cut(s)	47, 197, 206, 218, 352, 382, 437, 476, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 215, 311, 368
HpyF3I	CTNAG	3 cut(s)	135, 315, 618
Hsp92II	CATG	2 cut(s)	107, 314
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	631
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	559, 580
Lsp1109I	GCAGC	4 cut(s)	218, 230, 505, 574
LweI	GCATC	3 cut(s)	34, 149, 156
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	2 cut(s)	41, 170
MaeIII	GTNAC	2 cut(s)	328, 502
MalI	GATC	1 cut(s)	633
MboI	GATC	1 cut(s)	631
MboII	GAAGA	4 cut(s)	36, 249, 310, 563
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	439
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	55, 61, 353, 660
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	84, 237, 403, 550, 685
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	10
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	426, 576
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	2 cut(s)	426, 576
MwoI	GCNNNNNNNGC	4 cut(s)	203, 215, 311, 368
NdeII	GATC	1 cut(s)	631
NlaIII	CATG	2 cut(s)	107, 314
NmuCI	GTSAC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	114, 240
PkrI	GCNGC	4 cut(s)	208, 220, 520, 564
PsiI	TTATAA	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	424, 574
PspEI	GGTNACC	1 cut(s)	328
PspGI	CCWGG	2 cut(s)	424, 574
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	2 cut(s)	79, 176
RsaNI	GTAC	2 cut(s)	78, 175
RseI	CAYNNNNRTG	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	4 cut(s)	207, 219, 519, 563
Sau3AI	GATC	1 cut(s)	631
ScaI	AGTACT	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	426, 576
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	7 cut(s)	31, 180, 253, 414, 427, 677, 687
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	3 cut(s)	34, 149, 156
SfcI	CTRYAG	2 cut(s)	232, 519
SmiI	ATTTAAAT	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	10
Sse9I	AATT	4 cut(s)	55, 61, 353, 660
SsiI	CCGC	2 cut(s)	72, 453
SspMI	CTAG	2 cut(s)	41, 170
StyD4I	CCNGG	2 cut(s)	424, 574
SwaI	ATTTAAAT	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	82, 328, 543
TaqI	TCGA	2 cut(s)	463, 612
TasI	AATT	4 cut(s)	55, 61, 353, 660
TatI	WGTACW	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	114, 240
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	548
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	4 cut(s)	206, 218, 518, 562
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	548
VneI	GTGCAC	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	41, 170
ZrmI	AGTACT	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.