Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004970

Physical Location & Seq

Genomic Coordinates Forward (+)

3427242 .. 3430409

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1041100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCGTGGTCTGGGGTTTGTAAGAGAGCTCTTCCCCTCTCAACTTACCTCACAAGCTCACACCTTTTCACTCTCCAGTCCAGATGCATTCCCAGCTGTAATTTTAATGGAGGTGGTAGTAGTATTAGTGCATATCAGAGGCATTTCAGCCATGGTAGTAAGAATATGTGGCGGCGCTTTGAGTTAAGCTCGTTTGACAAGTGTGGTTGTCAGCTCTCACCATTTGCTTCTCAATCTCTGTTGAGAAGAATCCAGAGACCCTATTCTTCTCTGGCTGCCACGCAACGAAAATCGCGCAAGATGCTTTACTACTTGACGGGTTTGGTTTTTGCAATGGTGGCAGCCAGTTATGCAGCTGTTCCTCTCTATAGAAGATTCTGCCAAGCTACAGGGTATGGAGGCACTATCCAACGCCGTGAGAGTGTTGAACAGAAGATTGCTCGGCATGCTAAGGATGGCACAGTCACAAATAGGGAGATAGTGGTGCAGTTCAATGCTGATGTGGCTGATGGAATGCAATGGAAGTTTATTCCTACACAAAGAGAGGTAAGGGTAAAGCCTGGAGAAAGTGCACTTGCTTTCTATACTGCTGAAAACCGAAGTTCAACTCCAATAGTTGGTGTCTCAACTTATAATGTTACCCCTATGAAGGCTGCAGTTTACTTCAATAAAATACAGTGCTTTTGCTTCGAGGAGCAGCGGCTTCTTCCGGGGGAGCAGATTGACATGCCTGTGTTCTTTTATATCGACCCCGAGTTTGAAACAGATCCAAGAATGGACGGTATCAATAACATAATTTTGTCCTATACATTTTTCAAGGTCTCAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

278

Amino Acids

31.49

Weight (kDa)

9.34

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CtaG_Cox11	PF04442	119 - 273	1.2e-60	Cytochrome c oxidase assembly protein CtaG/Cox11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02410 AT1G02410 AT1G02410
malus_domestica	MD02G1272100.v1.1 MD07G1041100.v1.1
prunus_persica	Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1
pyrus_communis	pycom02g23270 pycom07g02850
rosa_chinensis	RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351
rosa_laevigata	RLG00000025608 RLG00000027871
rosa_multiflora	Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007
rosa_roxburghii	Rroxscaffold_4G00297020
rosa_rugosa	Rorug01G0271100 Rorug02G0640300
rosa_samantha	Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200
rosa_wichuraiana	Rw1G025270 Rw3G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccII	CGCG	1 cut(s)	295
AciI	CCGC	2 cut(s)	172, 700
AclWI	GGATC	1 cut(s)	761
AfiI	CCNNNNNNNGG	2 cut(s)	617, 649
AgsI	TTSAA	6 cut(s)	428, 493, 606, 667, 761, 817
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	7 cut(s)	29, 57, 96, 189, 214, 356, 386
AluI	AGCT	7 cut(s)	29, 57, 96, 189, 214, 356, 386
Alw21I	GWGCWC	2 cut(s)	31, 574
Alw26I	GTCTC	3 cut(s)	250, 628, 826
Alw44I	GTGCAC	1 cut(s)	570
AlwI	GGATC	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	752
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	5 cut(s)	275, 341, 353, 653, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AspLEI	GCGC	2 cut(s)	177, 297
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	2 cut(s)	31, 574
BbvI	GCAGC	5 cut(s)	262, 353, 365, 640, 709
BccI	CCATC	2 cut(s)	449, 503
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	3 cut(s)	250, 628, 826
BfmI	CTRYAG	3 cut(s)	367, 387, 654
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
BlsI	GCNGC	7 cut(s)	174, 277, 343, 355, 655, 699, 702
Bme1390I	CCNGG	2 cut(s)	561, 711
BmeT110I	CYCGRG	1 cut(s)	752
BmrFI	CCNGG	2 cut(s)	561, 711
BmsI	GCATC	2 cut(s)	74, 291
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	2 cut(s)	59, 582
Bpu10I	CCTNAGC	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	711
BsaI	GGTCTC	2 cut(s)	250, 826
BsaJI	CCNNGG	2 cut(s)	151, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 649
Bse1I	ACTGG	2 cut(s)	76, 345
Bse3DI	GCAATG	2 cut(s)	339, 524
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	151, 710
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	617, 649
BseMI	GCAATG	2 cut(s)	339, 524
BseNI	ACTGG	2 cut(s)	76, 345
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	5 cut(s)	262, 353, 365, 640, 709
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	31, 574
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	710
BslI	CCNNNNNNNGG	2 cut(s)	617, 649
BsmAI	GTCTC	3 cut(s)	250, 628, 826
BsmI	GAATGC	2 cut(s)	87, 519
Bso31I	GGTCTC	2 cut(s)	250, 826
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	31, 574
Bsp143I	GATC	1 cut(s)	766
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	2 cut(s)	172, 700
BspFNI	CGCG	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	761
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	2 cut(s)	250, 826
BsrDI	GCAATG	2 cut(s)	339, 524
BsrI	ACTGG	2 cut(s)	76, 345
BssECI	CCNNGG	2 cut(s)	151, 710
BssMI	GATC	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	463, 678, 782
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	450, 823
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 297
BstKTI	GATC	1 cut(s)	769
BstMAI	GTCTC	3 cut(s)	250, 628, 826
BstMBI	GATC	1 cut(s)	766
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 301, 338, 350, 446, 503
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	2 cut(s)	449, 730
BstSCI	CCNGG	2 cut(s)	559, 709
BstSFI	CTRYAG	3 cut(s)	367, 387, 654
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	5 cut(s)	262, 353, 365, 640, 709
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	683
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	2 cut(s)	177, 297
CviAII	CATG	3 cut(s)	152, 446, 727
DdeI	CTNAG	2 cut(s)	450, 823
DpnI	GATC	1 cut(s)	768
DpnII	GATC	1 cut(s)	766
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	2 cut(s)	250, 826
Eco53kI	GAGCTC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	752
EcoICRI	GAGCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	155, 449, 730
FatI	CATG	3 cut(s)	151, 445, 726
Fnu4HI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
GlaI	GCGC	2 cut(s)	176, 296
GluI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	2 cut(s)	59, 582
HaeII	RGCGCY	1 cut(s)	178
HapII	CCGG	1 cut(s)	710
HhaI	GCGC	2 cut(s)	177, 297
Hin1II	CATG	3 cut(s)	155, 449, 730
Hin6I	GCGC	2 cut(s)	175, 295
HinP1I	GCGC	2 cut(s)	175, 295
HinfI	GANTC	2 cut(s)	249, 375
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	572, 661
Hpy188I	TCNGA	2 cut(s)	138, 826
Hpy188III	TCNNGA	2 cut(s)	81, 253
Hpy8I	GTNNAC	2 cut(s)	572, 661
HpyAV	CCTTC	1 cut(s)	643
HpyCH4III	ACNGT	3 cut(s)	463, 678, 782
HpyCH4V	TGCA	8 cut(s)	87, 131, 332, 353, 487, 517, 572, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 301, 338, 350, 446, 503
HpyF3I	CTNAG	2 cut(s)	450, 823
Hsp92II	CATG	3 cut(s)	155, 449, 730
HspAI	GCGC	2 cut(s)	175, 295
Kzo9I	GATC	1 cut(s)	766
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	694, 715
Lsp1109I	GCAGC	5 cut(s)	262, 353, 365, 640, 709
LweI	GCATC	2 cut(s)	74, 291
MaeIII	GTNAC	2 cut(s)	463, 637
MalI	GATC	1 cut(s)	768
MboI	GATC	1 cut(s)	766
MboII	GAAGA	6 cut(s)	23, 258, 258, 384, 445, 698
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	2 cut(s)	31, 574
MluCI	AATT	2 cut(s)	100, 795
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	9 cut(s)	47, 59, 104, 132, 372, 392, 538, 685, 820
Mph1103I	ATGCAT	1 cut(s)	89
MseI	TTAA	2 cut(s)	105, 185
MslI	CAYNNNNRTG	1 cut(s)	731
MspA1I	CMGCKG	3 cut(s)	96, 356, 700
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	2 cut(s)	561, 711
Mva1269I	GAATGC	2 cut(s)	87, 519
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	6 cut(s)	93, 301, 338, 350, 446, 503
NciI	CCSGG	1 cut(s)	711
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	766
NlaIII	CATG	3 cut(s)	155, 449, 730
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	2 cut(s)	449, 730
PaeI	GCATGC	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	2 cut(s)	87, 519
PfeI	GAWTC	2 cut(s)	249, 375
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	7 cut(s)	174, 277, 343, 355, 655, 699, 702
PsiI	TTATAA	1 cut(s)	633
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	559
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	2 cut(s)	96, 356
RseI	CAYNNNNRTG	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	105, 185
SatI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
Sau3AI	GATC	1 cut(s)	766
ScrFI	CCNGG	2 cut(s)	561, 711
SduI	GDGCHC	2 cut(s)	31, 574
SfaNI	GCATC	2 cut(s)	74, 291
SfcI	CTRYAG	3 cut(s)	367, 387, 654
SmiMI	CAYNNNNRTG	1 cut(s)	731
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	2 cut(s)	100, 795
SsiI	CCGC	2 cut(s)	172, 700
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	559, 709
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	463, 678, 782
TaqI	TCGA	2 cut(s)	690, 747
TasI	AATT	2 cut(s)	100, 795
TauI	GCSGC	2 cut(s)	175, 703
TfiI	GAWTC	2 cut(s)	249, 375
Tru1I	TTAA	2 cut(s)	105, 185
Tru9I	TTAA	2 cut(s)	105, 185
TscAI	CASTG	1 cut(s)	683
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	5 cut(s)	275, 341, 353, 653, 697
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	683
Van91I	CCANNNNNTGG	1 cut(s)	617
VneI	GTGCAC	1 cut(s)	570
XceI	RCATGY	2 cut(s)	449, 730
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.