Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004970

Physical Location & Seq

Genomic Coordinates Forward (+)

1718149 .. 1723702

Gene Structure 5554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G012700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCATGGTCAAGGGTTTGTAAAAGAGCCCTTCCCCTCTTGCCTTACTTCAAGAACCCACAGCATATCACATGTGAATCCAGATGCATACCTTTCATTGGAGGTTGTAGTACTAGTAGTAGTGCATATCAGAGGCATTTTAGCCACGGTAGTCCTATTTGGCGCTTCAAGCTAGGCACATTTGACAAGTGCGGTCAGCTTCCTCCATTTGCTTCTCAATCTTTGTTGAGAATCCAGCGGCCCTATTCTGCTCAGGCTATCACACAACAGAAATCACGCAAGATGCTGTTGTACCTTACGGGTTTGGTGTTTGCAATGGTGGCAAGCAGTTATGCAGCTGTTCCTCTCTACAGAAGATTCTGCCAAGCTACTGGATATGGAGGCACTGTTCAACGTCGTGAGAGTGTTGAGCAGAAGATTGCTCGGCATGCTAAGGATGGCACAGTCACTACAAGGGAGATTGTGGTTCAGTTCAATGCTGATGTGGCTGATGGAATGCAATGGAAGTTTATTCCTACACAAAGAGAGGTAAGGGTCAAACCTGGAGAAAGTGCACTTGCTTTTTATACTGCTGAAAATCGAAGCTCAACTCCAATAGTTGGTGTCTCTACGTATAATGTTACCCCTATGAAGGCTGCAGTTTACTTCAATAAAATCCAGTGTTTTTGCTTTGAGGAGCAGCGCCTTCTTCCGGGGGAGCAGATTGACATGCCTGTGTTCTTTTATATCGACCCTGAGTTTGAAACAGATCCAAGAATGGATGGTATCAATAACATAATTTTGTCCTACACATTTTTCAAGGTTTCAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

272

Amino Acids

30.86

Weight (kDa)

9.26

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02410 AT1G02410 AT1G02410
malus_domestica	MD02G1272100.v1.1 MD07G1041100.v1.1
prunus_persica	Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1
pyrus_communis	pycom02g23270 pycom07g02850
rosa_chinensis	RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351
rosa_laevigata	RLG00000025608 RLG00000027871
rosa_multiflora	Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007
rosa_roxburghii	Rroxscaffold_4G00297020
rosa_rugosa	Rorug01G0271100 Rorug02G0640300
rosa_samantha	Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200
rosa_wichuraiana	Rw1G025270 Rw3G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AciI	CCGC	2 cut(s)	192, 238
AclWI	GGATC	1 cut(s)	743
AfaI	GTAC	2 cut(s)	112, 293
AfiI	CCNNNNNNNGG	4 cut(s)	98, 599, 631, 691
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	7 cut(s)	52, 169, 392, 475, 649, 743, 799
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	541
AloI	GAACNNNNNNTCC	2 cut(s)	372, 404
AluBI	AGCT	5 cut(s)	172, 199, 338, 368, 585
AluI	AGCT	5 cut(s)	172, 199, 338, 368, 585
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	1 cut(s)	610
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	743
AoxI	GGCC	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	3 cut(s)	335, 635, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	722, 754
AspLEI	GCGC	2 cut(s)	165, 684
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	693
BaeGI	GKGCMC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	347, 622, 691
BccI	CCATC	3 cut(s)	431, 485, 755
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	610
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	2 cut(s)	114, 173
BfmI	CTRYAG	2 cut(s)	349, 636
BfoI	RGCGCY	2 cut(s)	166, 685
BisI	GCNGC	4 cut(s)	239, 336, 636, 680
BlsI	GCNGC	4 cut(s)	240, 337, 637, 681
BmcAI	AGTACT	1 cut(s)	112
Bme1390I	CCNGG	2 cut(s)	543, 693
BmgT120I	GGNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	543, 693
BmsI	GCATC	2 cut(s)	74, 273
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	2 cut(s)	252, 432
BpuMI	CCSGG	1 cut(s)	693
BsaAI	YACGTR	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	145, 692
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 599, 631, 691
Bse1I	ACTGG	2 cut(s)	376, 658
Bse3DI	GCAATG	2 cut(s)	321, 506
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	145, 692
BseGI	GGATG	2 cut(s)	442, 766
BseLI	CCNNNNNNNGG	4 cut(s)	98, 599, 631, 691
BseMI	GCAATG	2 cut(s)	321, 506
BseMII	CTCAG	2 cut(s)	266, 726
BseNI	ACTGG	2 cut(s)	376, 658
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	347, 622, 691
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	1 cut(s)	692
BslI	CCNNNNNNNGG	4 cut(s)	98, 599, 631, 691
BsmAI	GTCTC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	31, 556
Bsp143I	GATC	1 cut(s)	748
BspACI	CCGC	2 cut(s)	192, 238
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	265, 727
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	321, 506
BsrI	ACTGG	2 cut(s)	376, 658
BssECI	CCNNGG	2 cut(s)	145, 692
BssMI	GATC	1 cut(s)	748
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	3 cut(s)	149, 388, 445
BstBAI	YACGTR	1 cut(s)	612
BstC8I	GCNNGC	2 cut(s)	325, 429
BstDEI	CTNAG	3 cut(s)	252, 432, 735
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	442, 766
BstH2I	RGCGCY	2 cut(s)	166, 685
BstHHI	GCGC	2 cut(s)	165, 684
BstKTI	GATC	1 cut(s)	751
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	1 cut(s)	748
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 320, 428, 485
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	3 cut(s)	75, 431, 712
BstSCI	CCNGG	2 cut(s)	541, 691
BstSFI	CTRYAG	2 cut(s)	349, 636
BstSLI	GKGCMC	1 cut(s)	556
BstSNI	TACGTA	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	347, 622, 691
BstX2I	RGATCY	1 cut(s)	748
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	442, 766
BtsIMutI	CAGTG	2 cut(s)	384, 665
Cac8I	GCNNGC	2 cut(s)	325, 429
CfoI	GCGC	2 cut(s)	165, 684
Cfr13I	GGNCC	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	111, 292
CviAII	CATG	4 cut(s)	6, 72, 428, 709
CviQI	GTAC	2 cut(s)	111, 292
DdeI	CTNAG	3 cut(s)	252, 432, 735
DpnI	GATC	1 cut(s)	750
DpnII	GATC	1 cut(s)	748
Eco105I	TACGTA	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	4 cut(s)	9, 75, 431, 712
FatI	CATG	4 cut(s)	5, 71, 427, 708
Fnu4HI	GCNGC	4 cut(s)	239, 336, 636, 680
FokI	GGATG	2 cut(s)	449, 773
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	4 cut(s)	239, 336, 636, 680
FspBI	CTAG	2 cut(s)	114, 173
GlaI	GCGC	2 cut(s)	164, 683
GluI	GCNGC	4 cut(s)	239, 336, 636, 680
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	2 cut(s)	166, 685
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	692
HhaI	GCGC	2 cut(s)	165, 684
Hin1II	CATG	4 cut(s)	9, 75, 431, 712
Hin6I	GCGC	2 cut(s)	163, 682
HinP1I	GCGC	2 cut(s)	163, 682
HinfI	GANTC	3 cut(s)	77, 231, 357
HpaII	CCGG	1 cut(s)	692
Hpy166II	GTNNAC	2 cut(s)	554, 643
Hpy188I	TCNGA	2 cut(s)	132, 808
Hpy188III	TCNNGA	3 cut(s)	52, 81, 398
Hpy8I	GTNNAC	2 cut(s)	554, 643
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	3 cut(s)	41, 625, 695
HpyCH4III	ACNGT	3 cut(s)	149, 388, 445
HpyCH4IV	ACGT	2 cut(s)	394, 611
HpyCH4V	TGCA	7 cut(s)	87, 125, 314, 335, 499, 554, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 320, 428, 485
HpyF3I	CTNAG	3 cut(s)	252, 432, 735
HpySE526I	ACGT	2 cut(s)	394, 611
Hsp92II	CATG	4 cut(s)	9, 75, 431, 712
HspAI	GCGC	2 cut(s)	163, 682
Kzo9I	GATC	1 cut(s)	748
LmnI	GCTCC	2 cut(s)	676, 697
Lsp1109I	GCAGC	3 cut(s)	347, 622, 691
LweI	GCATC	2 cut(s)	74, 273
MaeI	CTAG	2 cut(s)	114, 173
MaeII	ACGT	2 cut(s)	394, 611
MaeIII	GTNAC	2 cut(s)	445, 619
MalI	GATC	1 cut(s)	750
MboI	GATC	1 cut(s)	748
MboII	GAAGA	3 cut(s)	366, 427, 680
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	2 cut(s)	31, 556
MluCI	AATT	1 cut(s)	777
MnlI	CCTC	9 cut(s)	47, 95, 126, 213, 354, 374, 520, 667, 802
Mph1103I	ATGCAT	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	713
MspA1I	CMGCKG	2 cut(s)	238, 338
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	2 cut(s)	543, 693
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	4 cut(s)	169, 320, 428, 485
NciI	CCSGG	1 cut(s)	693
NdeII	GATC	1 cut(s)	748
NlaIII	CATG	4 cut(s)	9, 75, 431, 712
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	3 cut(s)	75, 431, 712
PaeI	GCATGC	1 cut(s)	431
PciI	ACATGT	1 cut(s)	71
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	77, 231, 357
PflMI	CCANNNNNTGG	1 cut(s)	599
PkrI	GCNGC	4 cut(s)	240, 337, 637, 681
Ppu21I	YACGTR	1 cut(s)	612
PscI	ACATGT	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	1 cut(s)	748
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	112, 293
RsaNI	GTAC	2 cut(s)	111, 292
RseI	CAYNNNNRTG	1 cut(s)	713
SatI	GCNGC	4 cut(s)	239, 336, 636, 680
Sau3AI	GATC	1 cut(s)	748
Sau96I	GGNCC	1 cut(s)	240
ScaI	AGTACT	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	543, 693
SduI	GDGCHC	2 cut(s)	31, 556
SfaNI	GCATC	2 cut(s)	74, 273
SfcI	CTRYAG	2 cut(s)	349, 636
SmiMI	CAYNNNNRTG	1 cut(s)	713
SnaBI	TACGTA	1 cut(s)	612
SpeI	ACTAGT	1 cut(s)	113
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	1 cut(s)	777
SsiI	CCGC	2 cut(s)	192, 238
SspMI	CTAG	2 cut(s)	114, 173
StyD4I	CCNGG	2 cut(s)	541, 691
TaaI	ACNGT	3 cut(s)	149, 388, 445
TaiI	ACGT	2 cut(s)	397, 614
TaqI	TCGA	2 cut(s)	580, 729
TasI	AATT	1 cut(s)	777
TatI	WGTACW	1 cut(s)	110
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	3 cut(s)	77, 231, 357
TscAI	CASTG	2 cut(s)	391, 665
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	335, 635, 679
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	85, 644
TspRI	CASTG	2 cut(s)	391, 665
Van91I	CCANNNNNTGG	1 cut(s)	599
VneI	GTGCAC	1 cut(s)	552
XceI	RCATGY	3 cut(s)	75, 431, 712
XspI	CTAG	2 cut(s)	114, 173
ZrmI	AGTACT	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.