Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004970

Physical Location & Seq

Genomic Coordinates Forward (+)

25643909 .. 25646594

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G281100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCATGGTCAAGGGTTTGCAAAAGAGCCCTTCCGCTCTCGCCTTACTTCAAGAACTCACAGCATTTCCCTTGTGAATCCAGATGCATACCCAGTTATAATTTCATTGGAGGTAGTAGTAGCAGTGCATATCAGAGGCATTTTAGCCATTACAGGACTATTTGGGGCTTCAAGCTCGGCTCTTTTGAAAAGTGCGGTCAGCTTCCATCATTGGCTTCTCAATCTTTGTTGAGAATCCAGCGACCCTATTCTTCTCAGGCTACCGCACAACAGAAATCACGCAAGATGCTGTTGTACCTTACGGGTTTGGTTTTTGCAATGGTGGCAAGCACTTATGCAGCTGTTCCTCTCTACAGAAGATTCTGCCAAGCTACTGGGTATGGAGGCACTGTCCAACGCCGTGAGAGTGTTGAGCAGAAGATTGCTCGGCATACTAAGGATGGCACAGTCACTACTAGGGAGATTGTGGTGCAGTTCAATGCTGATGTGGCTGATGGAATGCAATGGAAGTTTATTCCTACACAAAGAGAGATAAGGGTCAAACCTGGAGAAAGTGCACTTGCTTTTTATACCGCTGAAAATCGAAGTTCAATTCCAATAGTTGGTGTCTCTACGTATAATGTTACCCCTATGAAGGCTGCAGTTTACTTCAATAAAATACAGTGTTTTTGCTTCGAGGAGCAGCGCCTTCTTCCTGGGGAGCAGATTGACATGCCTGTGTTCTTTTATATCGACCCTGAGTTTGAAACGGATCCAAGAATGGATGGCATCAATAACATAATTTTGTCCTACACATTTTTCAAGGTTTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

272

Amino Acids

30.96

Weight (kDa)

9.36

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02410 AT1G02410 AT1G02410
malus_domestica	MD02G1272100.v1.1 MD07G1041100.v1.1
prunus_persica	Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1
pyrus_communis	pycom02g23270 pycom07g02850
rosa_chinensis	RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351
rosa_laevigata	RLG00000025608 RLG00000027871
rosa_multiflora	Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007
rosa_roxburghii	Rroxscaffold_4G00297020
rosa_rugosa	Rorug01G0271100 Rorug02G0640300
rosa_samantha	Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200
rosa_wichuraiana	Rw1G025270 Rw3G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	37
AciI	CCGC	4 cut(s)	35, 195, 264, 573
AclWI	GGATC	2 cut(s)	746, 759
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	602, 634
AgsI	TTSAA	8 cut(s)	52, 172, 188, 478, 591, 652, 746, 802
AjnI	CCWGG	2 cut(s)	544, 694
AluBI	AGCT	4 cut(s)	175, 202, 341, 371
AluI	AGCT	4 cut(s)	175, 202, 341, 371
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	613
Alw44I	GTGCAC	1 cut(s)	555
AlwI	GGATC	2 cut(s)	746, 759
ApaLI	GTGCAC	1 cut(s)	555
ApeKI	GCWGC	3 cut(s)	338, 638, 682
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
AspLEI	GCGC	1 cut(s)	687
BaeGI	GKGCMC	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	3 cut(s)	350, 625, 694
BccI	CCATC	4 cut(s)	214, 434, 488, 758
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	2 cut(s)	546, 696
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	2 cut(s)	352, 639
BfoI	RGCGCY	1 cut(s)	688
BisI	GCNGC	3 cut(s)	339, 639, 683
BlsI	GCNGC	3 cut(s)	340, 640, 684
Bme1390I	CCNGG	2 cut(s)	546, 696
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	2 cut(s)	546, 696
BmrI	ACTGGG	2 cut(s)	87, 384
BmsI	GCATC	3 cut(s)	74, 276, 777
BmuI	ACTGGG	2 cut(s)	87, 384
BpmI	CTGGAG	1 cut(s)	567
BsaAI	YACGTR	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	695
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 634
Bse1I	ACTGG	2 cut(s)	93, 379
Bse3DI	GCAATG	2 cut(s)	324, 509
BseBI	CCWGG	2 cut(s)	546, 696
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	2 cut(s)	445, 769
BseLI	CCNNNNNNNGG	2 cut(s)	602, 634
BseMI	GCAATG	2 cut(s)	324, 509
BseMII	CTCAG	2 cut(s)	269, 729
BseNI	ACTGG	2 cut(s)	93, 379
BseRI	GAGGAG	1 cut(s)	692
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	3 cut(s)	350, 625, 694
BsgI	GTGCAG	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	559
BslI	CCNNNNNNNGG	2 cut(s)	602, 634
BsmAI	GTCTC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	504
Bsp1286I	GDGCHC	2 cut(s)	31, 559
Bsp143I	GATC	1 cut(s)	751
BspACI	CCGC	4 cut(s)	35, 195, 264, 573
BspCNI	CTCAG	2 cut(s)	268, 730
BspLI	GGNNCC	1 cut(s)	753
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	2 cut(s)	746, 759
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	324, 509
BsrI	ACTGG	2 cut(s)	93, 379
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	1 cut(s)	751
Bst2UI	CCWGG	2 cut(s)	546, 696
Bst4CI	ACNGT	3 cut(s)	391, 448, 663
BstBAI	YACGTR	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	255, 435, 738
BstF5I	GGATG	2 cut(s)	445, 769
BstH2I	RGCGCY	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	1 cut(s)	754
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	1 cut(s)	751
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 488
BstNI	CCWGG	2 cut(s)	546, 696
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	2 cut(s)	544, 694
BstSFI	CTRYAG	2 cut(s)	352, 639
BstSLI	GKGCMC	1 cut(s)	559
BstSNI	TACGTA	1 cut(s)	615
BstV1I	GCAGC	3 cut(s)	350, 625, 694
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	751
BtsCI	GGATG	2 cut(s)	445, 769
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	3 cut(s)	130, 387, 668
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	2 cut(s)	6, 712
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	255, 435, 738
DpnI	GATC	1 cut(s)	753
DpnII	GATC	1 cut(s)	751
Eco105I	TACGTA	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	544, 694
EcoT22I	ATGCAT	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	2 cut(s)	9, 715
FatI	CATG	2 cut(s)	5, 711
Fnu4HI	GCNGC	3 cut(s)	339, 639, 683
FokI	GGATG	2 cut(s)	452, 776
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	339, 639, 683
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	3 cut(s)	339, 639, 683
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	688
HhaI	GCGC	1 cut(s)	687
Hin1II	CATG	2 cut(s)	9, 715
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HinfI	GANTC	3 cut(s)	77, 234, 360
Hpy166II	GTNNAC	2 cut(s)	557, 646
Hpy188I	TCNGA	2 cut(s)	135, 811
Hpy188III	TCNNGA	2 cut(s)	52, 81
Hpy8I	GTNNAC	2 cut(s)	557, 646
HpyAV	CCTTC	3 cut(s)	41, 628, 698
HpyCH4III	ACNGT	3 cut(s)	391, 448, 663
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	9 cut(s)	21, 87, 128, 317, 338, 472, 502, 557, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 488
HpyF3I	CTNAG	3 cut(s)	255, 435, 738
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	2 cut(s)	9, 715
HspAI	GCGC	1 cut(s)	685
Kzo9I	GATC	1 cut(s)	751
LmnI	GCTCC	2 cut(s)	679, 700
Lsp1109I	GCAGC	3 cut(s)	350, 625, 694
LweI	GCATC	3 cut(s)	74, 276, 777
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	2 cut(s)	448, 622
MalI	GATC	1 cut(s)	753
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	1 cut(s)	751
MboII	GAAGA	4 cut(s)	243, 369, 430, 683
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	2 cut(s)	31, 559
MluCI	AATT	3 cut(s)	100, 591, 780
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	5 cut(s)	104, 129, 357, 377, 670
Mph1103I	ATGCAT	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	2 cut(s)	341, 575
MspR9I	CCNGG	2 cut(s)	546, 696
Mva1269I	GAATGC	1 cut(s)	504
MvaI	CCWGG	2 cut(s)	546, 696
MwoI	GCNNNNNNNGC	2 cut(s)	323, 488
NdeII	GATC	1 cut(s)	751
NlaIII	CATG	2 cut(s)	9, 715
NlaIV	GGNNCC	1 cut(s)	753
NmeAIII	GCCGAG	2 cut(s)	156, 406
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	1 cut(s)	715
PctI	GAATGC	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	77, 234, 360
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	3 cut(s)	340, 640, 684
Ppu21I	YACGTR	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	544, 694
PspGI	CCWGG	2 cut(s)	544, 694
PspN4I	GGNNCC	1 cut(s)	753
PstI	CTGCAG	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	716
SatI	GCNGC	3 cut(s)	339, 639, 683
Sau3AI	GATC	1 cut(s)	751
ScrFI	CCNGG	2 cut(s)	546, 696
SduI	GDGCHC	2 cut(s)	31, 559
SetI	ASST	9 cut(s)	115, 177, 204, 300, 343, 373, 547, 617, 807
SfaNI	GCATC	3 cut(s)	74, 276, 777
SfcI	CTRYAG	2 cut(s)	352, 639
SmiMI	CAYNNNNRTG	1 cut(s)	716
SnaBI	TACGTA	1 cut(s)	615
Sse9I	AATT	3 cut(s)	100, 591, 780
SsiI	CCGC	4 cut(s)	35, 195, 264, 573
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	544, 694
TaaI	ACNGT	3 cut(s)	391, 448, 663
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	3 cut(s)	583, 675, 732
TasI	AATT	3 cut(s)	100, 591, 780
TfiI	GAWTC	3 cut(s)	77, 234, 360
TscAI	CASTG	3 cut(s)	130, 394, 668
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	3 cut(s)	338, 638, 682
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	94, 647
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	3 cut(s)	130, 394, 668
Van91I	CCANNNNNTGG	1 cut(s)	602
VneI	GTGCAC	1 cut(s)	555
XceI	RCATGY	1 cut(s)	715
XspI	CTAG	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.