Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008628

Physical Location & Seq

Genomic Coordinates Reverse (-)

610363 .. 612324

Gene Structure 1962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCTAACGCAAGAAGTTTGGTCGCCAAGGCAAACAATATTAACGTAGGTTCATTGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCCGCCGTGGTCTCGCTGCTAATTCCGGTAACCCCACGGTCTATGATATTACTAAGTTTGGAGCCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATACAAGTGTGTGACAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGGAACATTTTTGGCTGGTCCAGTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTTATAGGCACAATCATCGCTACGACCAGCGGGTACGCAACTCCCGAGTGGTTCTTGTTCGAGCGTGTTGACAATCTCGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGGTTGTGGTAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAAAAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGTCAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTACCGCACCAGCTGAAAGCCCCAACACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATAGCGACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGTGATTTGTGGTCCAGGACACGGTCTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGAAGACGTTAGCGGAATCCACGTTAACAACTGCACGATGATTGAGACCGACAATGGTCTTAGGATCAAGACATGGGGTGGGTCAGACCCAAGCAAGGCTGTGGACATTAAGTTTGAAAACATCATCATGCAGAGTGTCAAGAACCCAATCATCATTGATCAAAACTACGGTTCAAGAGGCGGAGATTCACAAGTTGCTATAAGTGATATTTTGTTCAAGAACATTAGAGGAACAACAATTACAAAAGATGTTGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCCAAGGAGTAAACGTTGTTGACGTGAACTTGGACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCATCAGGCGGTTTGGTCGGAGCTCTTTGCGATAACGCCAATGTTATCTTCGGTGGAAAACTTAGTTTCCCTATGTGTCCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

422

Amino Acids

44.43

Weight (kDa)

8.51

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	54 - 260	8.4e-07	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	79 - 388	3.7e-90	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02790
fragaria_vesca	FvH4_4g18750 FvH4_4g18750 FvH4_4g18750
malus_domestica	MD13G1163700.v1.1 MD16G1163200.v1.1
prunus_persica	Prupe.1G130700_v2.0.a1 Prupe.1G131100_v2.0.a1
pyrus_communis	pycom13g13940 pycom16g13830
rosa_chinensis	RchiOBHm_Chr4g0423531 RchiOBHm_Chr4g0423541
rosa_laevigata	RLG00000007551
rosa_multiflora	Rmu_sc0005267.1_g000015 Rmu_sc0005794.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365750 Rroxscaffold_7G00215080
rosa_rugosa	Rorug04G0188600
rosa_samantha	Rh4AG247600 Rh4BG252800 Rh4CG261200 Rh4DG248200
rosa_wichuraiana	Rw4G021210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	1108
AciI	CCGC	7 cut(s)	111, 115, 366, 633, 843, 1011, 1191
AclI	AACGTT	2 cut(s)	687, 1128
AclWI	GGATC	1 cut(s)	902
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	4 cut(s)	249, 371, 706, 821
AfiI	CCNNNNNNNGG	3 cut(s)	791, 925, 1118
AflIII	ACRYGT	2 cut(s)	582, 769
AgsI	TTSAA	5 cut(s)	217, 542, 947, 1005, 1048
AhlI	ACTAGT	1 cut(s)	262
AjiI	CACGTC	1 cut(s)	1138
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	4 cut(s)	483, 515, 1214, 1246
AluBI	AGCT	5 cut(s)	455, 558, 628, 641, 1205
AluI	AGCT	5 cut(s)	455, 558, 628, 641, 1205
Alw21I	GWGCWC	1 cut(s)	1207
Alw26I	GTCTC	4 cut(s)	128, 516, 714, 869
AlwI	GGATC	1 cut(s)	902
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	66, 112, 573
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	4 cut(s)	315, 347, 926, 958
AspS9I	GGNCC	4 cut(s)	290, 308, 487, 782
AsuHPI	GGTGA	4 cut(s)	110, 412, 461, 574
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	4 cut(s)	290, 308, 487, 782
AxyI	CCTNAGG	1 cut(s)	270
BaeI	ACNNNNGTAYC	2 cut(s)	218, 251
BanI	GGYRCC	1 cut(s)	1108
BanII	GRGCYC	1 cut(s)	1207
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	1 cut(s)	1207
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	3 cut(s)	179, 464, 653
BceAI	ACGGC	3 cut(s)	102, 161, 1096
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	1 cut(s)	786
BciVI	GTATCC	2 cut(s)	219, 674
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	4 cut(s)	128, 516, 714, 869
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	1 cut(s)	263
BfuI	GTATCC	2 cut(s)	219, 674
BisI	GCNGC	3 cut(s)	112, 115, 129
BlsI	GCNGC	3 cut(s)	113, 116, 130
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	4 cut(s)	290, 308, 487, 782
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	1138
BmgT120I	GGNCC	4 cut(s)	290, 308, 487, 782
BmiI	GGNNCC	5 cut(s)	175, 190, 427, 748, 1110
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	1 cut(s)	702
BoxI	GACNNNNGTC	1 cut(s)	885
BpiI	GAAGAC	1 cut(s)	840
BpmI	CTGGAG	1 cut(s)	738
BsaI	GGTCTC	2 cut(s)	128, 869
BsaJI	CCNNGG	6 cut(s)	27, 69, 118, 147, 439, 1117
BsaWI	WCCGGW	2 cut(s)	137, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	1113, 1143
Bsc4I	CCNNNNNNNGG	3 cut(s)	791, 925, 1118
Bse118I	RCCGGY	2 cut(s)	305, 428
Bse1I	ACTGG	3 cut(s)	245, 293, 721
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	6 cut(s)	27, 69, 118, 147, 439, 1117
BseGI	GGATG	2 cut(s)	612, 693
BseLI	CCNNNNNNNGG	3 cut(s)	791, 925, 1118
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	3 cut(s)	245, 293, 721
BseRI	GAGGAG	1 cut(s)	1182
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	847
Bsh1285I	CGRYCG	2 cut(s)	115, 742
BshFI	GGCC	3 cut(s)	68, 114, 575
BshNI	GGYRCC	1 cut(s)	1108
BsiEI	CGRYCG	2 cut(s)	115, 742
BsiHKAI	GWGCWC	1 cut(s)	1207
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	138, 306, 423, 429
BslFI	GGGAC	1 cut(s)	1245
BslI	CCNNNNNNNGG	3 cut(s)	791, 925, 1118
BsmAI	GTCTC	4 cut(s)	128, 516, 714, 869
BsmBI	CGTCTC	2 cut(s)	516, 714
BsmFI	GGGAC	1 cut(s)	1245
BsnI	GGCC	3 cut(s)	68, 114, 575
Bso31I	GGTCTC	2 cut(s)	128, 869
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	1207
Bsp143I	GATC	2 cut(s)	894, 988
BspACI	CCGC	7 cut(s)	111, 115, 366, 633, 843, 1011, 1191
BspANI	GGCC	3 cut(s)	68, 114, 575
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	5 cut(s)	175, 190, 427, 748, 1110
BspPI	GGATC	1 cut(s)	902
BspT107I	GGYRCC	1 cut(s)	1108
BspTNI	GGTCTC	2 cut(s)	128, 869
BsrDI	GCAATG	1 cut(s)	682
BsrFI	RCCGGY	2 cut(s)	305, 428
BsrI	ACTGG	3 cut(s)	245, 293, 721
BssAI	RCCGGY	2 cut(s)	305, 428
BssECI	CCNNGG	6 cut(s)	27, 69, 118, 147, 439, 1117
BssMI	GATC	2 cut(s)	894, 988
BssT1I	CCWWGG	3 cut(s)	27, 69, 1117
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	7 cut(s)	151, 242, 331, 704, 763, 794, 1001
BstDEI	CTNAG	7 cut(s)	165, 270, 589, 600, 797, 890, 1244
BstDSI	CCRYGG	3 cut(s)	118, 147, 439
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	612, 693
BstKTI	GATC	2 cut(s)	897, 991
BstMAI	GTCTC	4 cut(s)	128, 516, 714, 869
BstMBI	GATC	2 cut(s)	894, 988
BstMCI	CGRYCG	2 cut(s)	115, 742
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	586
BstPAI	GACNNNNGTC	1 cut(s)	885
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	784
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	840
BstZI	CGGCCG	1 cut(s)	112
Bsu36I	CCTNAGG	1 cut(s)	270
BsuI	GTATCC	2 cut(s)	219, 674
BsuRI	GGCC	3 cut(s)	68, 114, 575
BtgI	CCRYGG	3 cut(s)	118, 147, 439
BtgZI	GCGATG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	1138
BtsCI	GGATG	2 cut(s)	612, 693
CciNI	GCGGCCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	305, 428
Cfr13I	GGNCC	4 cut(s)	290, 308, 487, 782
Csp6I	GTAC	4 cut(s)	248, 370, 705, 820
CviAII	CATG	6 cut(s)	222, 312, 529, 583, 903, 958
CviQI	GTAC	4 cut(s)	248, 370, 705, 820
DdeI	CTNAG	7 cut(s)	165, 270, 589, 600, 797, 890, 1244
DpnI	GATC	2 cut(s)	896, 990
DpnII	GATC	2 cut(s)	894, 988
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	112
EagI	CGGCCG	1 cut(s)	112
EciI	GGCGGA	1 cut(s)	1026
Ecl136II	GAGCTC	1 cut(s)	1205
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	3 cut(s)	27, 69, 1117
Eco147I	AGGCCT	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	1207
Eco31I	GGTCTC	2 cut(s)	128, 869
Eco47I	GGWCC	4 cut(s)	290, 308, 487, 782
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	1205
Eco81I	CCTNAGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	1205
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	3 cut(s)	27, 69, 1117
EcoT38I	GRGCYC	1 cut(s)	1207
ErhI	CCWWGG	3 cut(s)	27, 69, 1117
Esp3I	CGTCTC	2 cut(s)	516, 714
FaeI	CATG	6 cut(s)	225, 315, 532, 586, 906, 961
FaqI	GGGAC	1 cut(s)	1245
FatI	CATG	6 cut(s)	221, 311, 528, 582, 902, 957
FauI	CCCGC	1 cut(s)	359
FbaI	TGATCA	1 cut(s)	988
Fnu4HI	GCNGC	3 cut(s)	112, 115, 129
FokI	GGATG	2 cut(s)	599, 680
FriOI	GRGCYC	1 cut(s)	1207
Fsp4HI	GCNGC	3 cut(s)	112, 115, 129
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	3 cut(s)	112, 115, 129
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	3 cut(s)	68, 114, 575
HapII	CCGG	4 cut(s)	138, 306, 423, 429
Hin1II	CATG	6 cut(s)	225, 315, 532, 586, 906, 961
HincII	GTYRAC	4 cut(s)	406, 610, 856, 1135
HindII	GTYRAC	4 cut(s)	406, 610, 856, 1135
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	3 cut(s)	58, 846, 1016
HpaI	GTTAAC	2 cut(s)	610, 856
HpaII	CCGG	4 cut(s)	138, 306, 423, 429
HphI	GGTGA	4 cut(s)	110, 412, 461, 574
Hpy166II	GTNNAC	8 cut(s)	406, 565, 610, 856, 934, 1126, 1135, 1141
Hpy188I	TCNGA	3 cut(s)	916, 1089, 1202
Hpy188III	TCNNGA	7 cut(s)	380, 460, 523, 898, 970, 1005, 1048
Hpy8I	GTNNAC	8 cut(s)	406, 565, 610, 856, 934, 1126, 1135, 1141
Hpy99I	CGWCG	1 cut(s)	767
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	7 cut(s)	151, 242, 331, 704, 763, 794, 1001
HpyCH4IV	ACGT	9 cut(s)	45, 509, 687, 756, 769, 837, 852, 1128, 1137
HpyCH4V	TGCA	5 cut(s)	315, 495, 680, 864, 961
HpyF3I	CTNAG	7 cut(s)	165, 270, 589, 600, 797, 890, 1244
HpySE526I	ACGT	9 cut(s)	45, 509, 687, 756, 769, 837, 852, 1128, 1137
Hsp92II	CATG	6 cut(s)	225, 315, 532, 586, 906, 961
Ksp22I	TGATCA	1 cut(s)	988
KspAI	GTTAAC	2 cut(s)	610, 856
Kzo9I	GATC	2 cut(s)	894, 988
LmnI	GCTCC	3 cut(s)	173, 752, 1202
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	702
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	9 cut(s)	45, 509, 687, 756, 769, 837, 852, 1128, 1137
MaeIII	GTNAC	4 cut(s)	140, 236, 325, 757
MalI	GATC	2 cut(s)	896, 990
MboI	GATC	2 cut(s)	894, 988
MboII	GAAGA	4 cut(s)	491, 845, 1186, 1222
MhlI	GDGCHC	1 cut(s)	1207
MluCI	AATT	3 cut(s)	133, 518, 1068
MmeI	TCCRAC	3 cut(s)	530, 774, 1180
MnlI	CCTC	7 cut(s)	428, 513, 707, 823, 1001, 1052, 1160
MseI	TTAA	6 cut(s)	42, 204, 609, 624, 855, 939
MslI	CAYNNNNRTG	1 cut(s)	956
MspA1I	CMGCKG	2 cut(s)	366, 641
MspI	CCGG	4 cut(s)	138, 306, 423, 429
MspR9I	CCNGG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	786
NdeII	GATC	2 cut(s)	894, 988
NlaIII	CATG	6 cut(s)	225, 315, 532, 586, 906, 961
NlaIV	GGNNCC	5 cut(s)	175, 190, 427, 748, 1110
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	236, 325
NotI	GCGGCCGC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	575
PciI	ACATGT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	4 cut(s)	378, 762, 834, 1134
PfeI	GAWTC	3 cut(s)	58, 846, 1016
PflFI	GACNNNGTC	1 cut(s)	792
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	3 cut(s)	113, 116, 130
PscI	ACATGT	1 cut(s)	582
PshAI	GACNNNNGTC	1 cut(s)	885
Psp124BI	GAGCTC	1 cut(s)	1207
Psp1406I	AACGTT	2 cut(s)	687, 1128
Psp6I	CCWGG	1 cut(s)	784
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	5 cut(s)	175, 190, 427, 748, 1110
PspPI	GGNCC	4 cut(s)	290, 308, 487, 782
PsrI	GAACNNNNNNTAC	2 cut(s)	1054, 1086
PsyI	GACNNNGTC	1 cut(s)	792
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	4 cut(s)	249, 371, 706, 821
RsaNI	GTAC	4 cut(s)	248, 370, 705, 820
RseI	CAYNNNNRTG	1 cut(s)	956
SacI	GAGCTC	1 cut(s)	1207
SaqAI	TTAA	6 cut(s)	42, 204, 609, 624, 855, 939
SatI	GCNGC	3 cut(s)	112, 115, 129
Sau3AI	GATC	2 cut(s)	894, 988
Sau96I	GGNCC	4 cut(s)	290, 308, 487, 782
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	1 cut(s)	1207
SfaNI	GCATC	1 cut(s)	702
SinI	GGWCC	4 cut(s)	290, 308, 487, 782
SmiMI	CAYNNNNRTG	1 cut(s)	956
SpeI	ACTAGT	1 cut(s)	262
Sse9I	AATT	3 cut(s)	133, 518, 1068
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	7 cut(s)	111, 115, 366, 633, 843, 1011, 1191
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	1207
StuI	AGGCCT	1 cut(s)	575
StyD4I	CCNGG	1 cut(s)	784
StyI	CCWWGG	3 cut(s)	27, 69, 1117
TaaI	ACNGT	7 cut(s)	151, 242, 331, 704, 763, 794, 1001
TaiI	ACGT	9 cut(s)	48, 512, 690, 759, 772, 840, 855, 1131, 1140
TaqI	TCGA	3 cut(s)	396, 699, 765
TaqII	GACCGA	2 cut(s)	728, 893
TasI	AATT	3 cut(s)	133, 518, 1068
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	2 cut(s)	114, 117
TfiI	GAWTC	3 cut(s)	58, 846, 1016
Tru1I	TTAA	6 cut(s)	42, 204, 609, 624, 855, 939
Tru9I	TTAA	6 cut(s)	42, 204, 609, 624, 855, 939
TseFI	GTSAC	2 cut(s)	236, 325
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	2 cut(s)	236, 325
TspDTI	ATGAA	2 cut(s)	42, 545
Tth111I	GACNNNGTC	1 cut(s)	792
VpaK11BI	GGWCC	4 cut(s)	290, 308, 487, 782
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	586
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.