Rh4AG247600

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
55996937 .. 55999617
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG247600.1

Sequence Viewer

Length: 1098 bp
ATGGCTATCAATGCAGGAATGTCTTGGAGCCACGCCTTTCTTTTCGTGTGCTTAGTTCCACTAGCCCATCTTGCGACCGCCCGTGAAAGACAGATAATTCCTCCGGTATTACCCGATGTTTTCCGCGGCAACAATTTGGCTCGCCATGGTAGAGCTGATCCCACTGAGAAAATCTTCAACGTTCTAGATTTTGGCGCCGTGGCCGATGGAAAGAAAGATTCAGCCATTTATTTCATACGAACATGGATTGCGGCGTGCCGGGGTACTCACACTGGGAAATCAAGGGTTGTGATTCCGGAAGGGACGTTCAAAGCCGGGCCAGTTATATTGCAGGGTCCATGCACCTGCGCGAAGCCTATAATTGTTGAAATTAAAGGGACCGTATTAGGAGCCAATGACTTATCCTTATATGAAGAACCATACTGGATTTTATTTGAAAAGGTGGACGGAGTGATAGTTACAGGCAAGGGTACTCTTAATGGCCAAGGTTCAAGTGTCTGGAAAAACGTTGAGAGCTGCAGCGGTAGCGACTGCAGTCCACTCCCATCGAACCTAAAATTTAACGGAGTCACAAACGGGCTCATCCGCGGCATCAATTCGATAAACCCTAAGGGAGTGCACATTTTCATCACGGACAGCCAGAACATTAGGGTGCGCGCAGTCCATATCGAAGCGCCCGGAACTAGCCCTAACACCGATGGCATACACATAAGTGACTCGAACAACGTGAGGATCGCCAGAACTCACATTTCTACCGGGGATGACTGCGTAGGTATGATTCAGGGATCCACCAACATTGCCATCAACAAAGTCTTTTGCGGACCTGGACATGGAATCAGCGTTGGTAGCCTTGGCAAATACGAGACTGAAAATGATGTGAGAGGGATCATTGTCAAGAACTGCACTTTTGCCAACACGGACAACGGTATCAGAATCAAGTCGTGGCCGGGATCGCAGCCAAGTCAAGCTACCGGCATGATTTTCCAGGACCTAATCATGCAAAATGTTAGGAACCCCATCATAATCGACCAGGAGTACGGTTGTAACGGCAAATGCAACAAAGCGGTACGTACAAAAAAAATCAATAAATCTAGCTAA

Protein Analysis

365

Amino Acids

39.28

Weight (kDa)

9.01

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 90 - 358 2.2e-70 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 4 cut(s) 126, 350, 588, 657
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 9 cut(s) 78, 124, 126, 251, 522, 586, 588, 819, 1064
AclI AACGTT 2 cut(s) 180, 507
AclWI GGATC 6 cut(s) 152, 740, 780, 793, 893, 958
AcoI YGGCCR 3 cut(s) 201, 481, 944
AcsI RAATTY 1 cut(s) 557
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 5 cut(s) 265, 472, 1037, 1068, 1072
AfiI CCNNNNNNNGG 1 cut(s) 830
AgsI TTSAA 5 cut(s) 178, 310, 368, 437, 492
AjnI CCWGG 3 cut(s) 823, 984, 1029
AleI CACNNNNGTG 1 cut(s) 711
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 4 cut(s) 155, 516, 968, 1095
AluI AGCT 4 cut(s) 155, 516, 968, 1095
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 1 cut(s) 857
Alw44I GTGCAC 1 cut(s) 617
AlwI GGATC 6 cut(s) 152, 740, 780, 793, 893, 958
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 4 cut(s) 201, 317, 481, 944
ApaLI GTGCAC 1 cut(s) 617
ApeKI GCWGC 3 cut(s) 516, 519, 955
ApoI RAATTY 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 5 cut(s) 197, 350, 657, 659, 676
AspS9I GGNCC 5 cut(s) 317, 335, 378, 821, 988
AsuC2I CCSGG 5 cut(s) 260, 316, 678, 757, 948
AvaII GGWCC 4 cut(s) 335, 378, 821, 988
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 621
BaeI ACNNNNGTAYC 2 cut(s) 910, 943
BalI TGGCCA 1 cut(s) 483
BamHI GGATCC 1 cut(s) 785
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 3 cut(s) 503, 531, 967
BccI CCATC 6 cut(s) 75, 200, 553, 692, 809, 1025
BceAI ACGGC 2 cut(s) 182, 1063
BciT130I CCWGG 3 cut(s) 825, 986, 1031
BcnI CCSGG 5 cut(s) 260, 316, 678, 757, 948
BcoDI GTCTC 1 cut(s) 857
BfaI CTAG 4 cut(s) 62, 185, 684, 1092
BfmI CTRYAG 2 cut(s) 517, 532
BfoI RGCGCY 2 cut(s) 198, 677
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 6 cut(s) 127, 252, 517, 520, 589, 956
BlsI GCNGC 6 cut(s) 128, 253, 518, 521, 590, 957
Bme1390I CCNGG 8 cut(s) 260, 316, 678, 757, 825, 948, 986, 1031
Bme18I GGWCC 4 cut(s) 335, 378, 821, 988
BmgT120I GGNCC 5 cut(s) 317, 335, 378, 821, 988
BmiI GGNNCC 7 cut(s) 29, 196, 336, 379, 391, 787, 1013
BmrFI CCNGG 8 cut(s) 260, 316, 678, 757, 825, 948, 986, 1031
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 282
BoxI GACNNNNGTC 1 cut(s) 534
BpuMI CCSGG 5 cut(s) 260, 316, 678, 757, 948
BsaAI YACGTR 1 cut(s) 1070
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 8 cut(s) 124, 145, 198, 259, 484, 586, 756, 850
BsaWI WCCGGW 2 cut(s) 103, 295
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 830
Bse118I RCCGGY 1 cut(s) 971
Bse1I ACTGG 3 cut(s) 277, 320, 428
Bse21I CCTNAGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 795
BseAI TCCGGA 1 cut(s) 295
BseBI CCWGG 3 cut(s) 825, 986, 1031
BseDI CCNNGG 8 cut(s) 124, 145, 198, 259, 484, 586, 756, 850
BseGI GGATG 2 cut(s) 582, 766
BseLI CCNNNNNNNGG 1 cut(s) 830
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 3 cut(s) 277, 320, 428
BsePI GCGCGC 1 cut(s) 655
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 3 cut(s) 503, 531, 967
BsgI GTGCAG 1 cut(s) 886
Bsh1236I CGCG 4 cut(s) 126, 350, 588, 657
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 4 cut(s) 203, 319, 483, 946
BshNI GGYRCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 621
BsiSI CCGG 8 cut(s) 104, 259, 296, 315, 678, 756, 947, 972
BslFI GGGAC 2 cut(s) 316, 391
BslI CCNNNNNNNGG 1 cut(s) 830
BsmAI GTCTC 1 cut(s) 857
BsmFI GGGAC 2 cut(s) 316, 391
BsnI GGCC 4 cut(s) 203, 319, 483, 946
Bsp1286I GDGCHC 2 cut(s) 582, 621
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 5 cut(s) 157, 732, 785, 885, 950
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 9 cut(s) 78, 124, 126, 251, 522, 586, 588, 819, 1064
BspANI GGCC 4 cut(s) 203, 319, 483, 946
BspCNI CTCAG 1 cut(s) 157
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 4 cut(s) 126, 350, 588, 657
BspLI GGNNCC 7 cut(s) 29, 196, 336, 379, 391, 787, 1013
BspMAI CTGCAG 2 cut(s) 521, 536
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 6 cut(s) 152, 740, 780, 793, 893, 958
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 795
BsrFI RCCGGY 1 cut(s) 971
BsrI ACTGG 3 cut(s) 277, 320, 428
BssAI RCCGGY 1 cut(s) 971
BssECI CCNNGG 8 cut(s) 124, 145, 198, 259, 484, 586, 756, 850
BssHII GCGCGC 1 cut(s) 655
BssMI GATC 5 cut(s) 157, 732, 785, 885, 950
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 3 cut(s) 145, 484, 850
Bst2UI CCWGG 3 cut(s) 825, 986, 1031
Bst4CI ACNGT 3 cut(s) 382, 926, 1040
BstACI GRCGYC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 1070
BstC8I GCNNGC 3 cut(s) 142, 256, 657
BstDEI CTNAG 3 cut(s) 52, 165, 609
BstDSI CCRYGG 4 cut(s) 124, 145, 198, 586
BstF5I GGATG 2 cut(s) 582, 766
BstFNI CGCG 4 cut(s) 126, 350, 588, 657
BstH2I RGCGCY 2 cut(s) 198, 677
BstHHI GCGC 5 cut(s) 197, 350, 657, 659, 676
BstKTI GATC 5 cut(s) 160, 735, 788, 888, 953
BstMAI GTCTC 1 cut(s) 857
BstMBI GATC 5 cut(s) 157, 732, 785, 885, 950
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 5 cut(s) 11, 71, 525, 846, 952
BstNI CCWGG 3 cut(s) 825, 986, 1031
BstPAI GACNNNNGTC 1 cut(s) 534
BstSCI CCNGG 8 cut(s) 258, 314, 676, 755, 823, 946, 984, 1029
BstSFI CTRYAG 2 cut(s) 517, 532
BstSLI GKGCMC 1 cut(s) 621
BstSNI TACGTA 1 cut(s) 1070
BstUI CGCG 4 cut(s) 126, 350, 588, 657
BstV1I GCAGC 3 cut(s) 503, 531, 967
BstX2I RGATCY 1 cut(s) 785
BstYI RGATCY 1 cut(s) 785
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 4 cut(s) 203, 319, 483, 946
BtgI CCRYGG 4 cut(s) 124, 145, 198, 586
BtsCI GGATG 2 cut(s) 582, 766
BtsIMutI CAGTG 2 cut(s) 162, 270
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 3 cut(s) 142, 256, 657
CfoI GCGC 5 cut(s) 197, 350, 657, 659, 676
Cfr10I RCCGGY 1 cut(s) 971
Cfr13I GGNCC 5 cut(s) 317, 335, 378, 821, 988
Cfr42I CCGCGG 2 cut(s) 127, 589
Csp6I GTAC 5 cut(s) 264, 471, 1036, 1067, 1071
CspCI CAANNNNNGTGG 2 cut(s) 778, 813
CviAII CATG 6 cut(s) 146, 243, 339, 830, 976, 997
CviQI GTAC 5 cut(s) 264, 471, 1036, 1067, 1071
DdeI CTNAG 3 cut(s) 52, 165, 609
DinI GGCGCC 1 cut(s) 196
DpnI GATC 5 cut(s) 159, 734, 787, 887, 952
DpnII GATC 5 cut(s) 157, 732, 785, 885, 950
EaeI YGGCCR 3 cut(s) 201, 481, 944
Eco105I TACGTA 1 cut(s) 1070
Eco130I CCWWGG 3 cut(s) 145, 484, 850
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 4 cut(s) 335, 378, 821, 988
Eco81I CCTNAGG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 988
EcoRII CCWGG 3 cut(s) 823, 984, 1029
EcoT14I CCWWGG 3 cut(s) 145, 484, 850
EcoT38I GRGCYC 1 cut(s) 582
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 3 cut(s) 145, 484, 850
FaeI CATG 6 cut(s) 149, 246, 342, 833, 979, 1000
FaqI GGGAC 2 cut(s) 316, 391
FatI CATG 6 cut(s) 145, 242, 338, 829, 975, 996
Fnu4HI GCNGC 6 cut(s) 127, 252, 517, 520, 589, 956
FokI GGATG 2 cut(s) 569, 773
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 6 cut(s) 127, 252, 517, 520, 589, 956
FspBI CTAG 4 cut(s) 62, 185, 684, 1092
GlaI GCGC 5 cut(s) 196, 349, 656, 658, 675
GluI GCNGC 6 cut(s) 127, 252, 517, 520, 589, 956
HaeII RGCGCY 2 cut(s) 198, 677
HaeIII GGCC 4 cut(s) 203, 319, 483, 946
HapII CCGG 8 cut(s) 104, 259, 296, 315, 678, 756, 947, 972
HhaI GCGC 5 cut(s) 197, 350, 657, 659, 676
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 6 cut(s) 149, 246, 342, 833, 979, 1000
Hin6I GCGC 5 cut(s) 195, 348, 655, 657, 674
HinP1I GCGC 5 cut(s) 195, 348, 655, 657, 674
HinfI GANTC 7 cut(s) 218, 292, 567, 716, 778, 834, 933
HpaII CCGG 8 cut(s) 104, 259, 296, 315, 678, 756, 947, 972
Hpy166II GTNNAC 3 cut(s) 445, 539, 619
Hpy188I TCNGA 1 cut(s) 932
Hpy188III TCNNGA 4 cut(s) 185, 296, 499, 895
Hpy8I GTNNAC 3 cut(s) 445, 539, 619
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 3 cut(s) 382, 926, 1040
HpyCH4IV ACGT 5 cut(s) 180, 305, 507, 726, 1069
HpyCH4V TGCA 9 cut(s) 14, 331, 342, 519, 534, 619, 903, 1000, 1056
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 71, 525, 846, 952
HpyF3I CTNAG 3 cut(s) 52, 165, 609
HpySE526I ACGT 5 cut(s) 180, 305, 507, 726, 1069
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 6 cut(s) 149, 246, 342, 833, 979, 1000
HspAI GCGC 5 cut(s) 195, 348, 655, 657, 674
KasI GGCGCC 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 295
KspI CCGCGG 2 cut(s) 127, 589
Kzo9I GATC 5 cut(s) 157, 732, 785, 885, 950
LmnI GCTCC 2 cut(s) 27, 389
Lsp1109I GCAGC 3 cut(s) 503, 531, 967
LweI GCATC 1 cut(s) 600
MaeI CTAG 4 cut(s) 62, 185, 684, 1092
MaeII ACGT 5 cut(s) 180, 305, 507, 726, 1069
MaeIII GTNAC 4 cut(s) 457, 568, 713, 1043
MalI GATC 5 cut(s) 159, 734, 787, 887, 952
MboI GATC 5 cut(s) 157, 732, 785, 885, 950
MboII GAAGA 2 cut(s) 166, 425
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 2 cut(s) 582, 621
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 6 cut(s) 96, 133, 360, 369, 557, 595
MluNI TGGCCA 1 cut(s) 483
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 2 cut(s) 576, 710
MnlI CCTC 3 cut(s) 111, 723, 875
Mox20I TGGCCA 1 cut(s) 483
MroI TCCGGA 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 173
MscI TGGCCA 1 cut(s) 483
MseI TTAA 3 cut(s) 372, 477, 561
MslI CAYNNNNRTG 2 cut(s) 650, 711
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 3 cut(s) 126, 522, 588
MspI CCGG 8 cut(s) 104, 259, 296, 315, 678, 756, 947, 972
MspR9I CCNGG 8 cut(s) 260, 316, 678, 757, 825, 948, 986, 1031
MvaI CCWGG 3 cut(s) 825, 986, 1031
MvnI CGCG 4 cut(s) 126, 350, 588, 657
MwoI GCNNNNNNNGC 5 cut(s) 11, 71, 525, 846, 952
NarI GGCGCC 1 cut(s) 195
NciI CCSGG 5 cut(s) 260, 316, 678, 757, 948
NcoI CCATGG 1 cut(s) 145
NdeII GATC 5 cut(s) 157, 732, 785, 885, 950
NlaIII CATG 6 cut(s) 149, 246, 342, 833, 979, 1000
NlaIV GGNNCC 7 cut(s) 29, 196, 336, 379, 391, 787, 1013
NmuCI GTSAC 2 cut(s) 568, 713
OliI CACNNNNGTG 1 cut(s) 711
PaqCI CACCTGC 1 cut(s) 353
PauI GCGCGC 1 cut(s) 655
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 5 cut(s) 218, 292, 778, 834, 933
PfoI TCCNGGA 1 cut(s) 984
PkrI GCNGC 6 cut(s) 128, 253, 518, 521, 590, 957
PleI GAGTC 2 cut(s) 575, 710
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 2 cut(s) 575, 710
Ppu21I YACGTR 1 cut(s) 1070
PpuMI RGGWCCY 1 cut(s) 988
PshAI GACNNNNGTC 1 cut(s) 534
Psp1406I AACGTT 2 cut(s) 180, 507
Psp5II RGGWCCY 1 cut(s) 988
Psp6I CCWGG 3 cut(s) 823, 984, 1029
PspGI CCWGG 3 cut(s) 823, 984, 1029
PspN4I GGNNCC 7 cut(s) 29, 196, 336, 379, 391, 787, 1013
PspPI GGNCC 5 cut(s) 317, 335, 378, 821, 988
PspPPI RGGWCCY 1 cut(s) 988
PstI CTGCAG 2 cut(s) 521, 536
PsuI RGATCY 1 cut(s) 785
PteI GCGCGC 1 cut(s) 655
RsaI GTAC 5 cut(s) 265, 472, 1037, 1068, 1072
RsaNI GTAC 5 cut(s) 264, 471, 1036, 1067, 1071
RseI CAYNNNNRTG 2 cut(s) 650, 711
SacII CCGCGG 2 cut(s) 127, 589
SaqAI TTAA 3 cut(s) 372, 477, 561
SatI GCNGC 6 cut(s) 127, 252, 517, 520, 589, 956
Sau3AI GATC 5 cut(s) 157, 732, 785, 885, 950
Sau96I GGNCC 5 cut(s) 317, 335, 378, 821, 988
SchI GAGTC 2 cut(s) 576, 710
ScrFI CCNGG 8 cut(s) 260, 316, 678, 757, 825, 948, 986, 1031
SduI GDGCHC 2 cut(s) 582, 621
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 2 cut(s) 517, 532
SfoI GGCGCC 1 cut(s) 196
Sfr303I CCGCGG 2 cut(s) 127, 589
SgrBI CCGCGG 2 cut(s) 127, 589
SinI GGWCC 4 cut(s) 335, 378, 821, 988
SmiMI CAYNNNNRTG 2 cut(s) 650, 711
SnaBI TACGTA 1 cut(s) 1070
Sse9I AATT 6 cut(s) 96, 133, 360, 369, 557, 595
SsiI CCGC 9 cut(s) 78, 124, 126, 251, 522, 586, 588, 819, 1064
SspDI GGCGCC 1 cut(s) 194
SspMI CTAG 4 cut(s) 62, 185, 684, 1092
StyD4I CCNGG 8 cut(s) 258, 314, 676, 755, 823, 946, 984, 1029
StyI CCWWGG 3 cut(s) 145, 484, 850
TaaI ACNGT 3 cut(s) 382, 926, 1040
TaiI ACGT 5 cut(s) 183, 308, 510, 729, 1072
TaqI TCGA 5 cut(s) 548, 599, 669, 719, 1026
TasI AATT 6 cut(s) 96, 133, 360, 369, 557, 595
TauI GCSGC 3 cut(s) 129, 254, 591
TfiI GAWTC 5 cut(s) 218, 292, 778, 834, 933
Tru1I TTAA 3 cut(s) 372, 477, 561
Tru9I TTAA 3 cut(s) 372, 477, 561
TscAI CASTG 2 cut(s) 169, 277
TseFI GTSAC 2 cut(s) 568, 713
TseI GCWGC 3 cut(s) 516, 519, 955
Tsp45I GTSAC 2 cut(s) 568, 713
TspDTI ATGAA 3 cut(s) 223, 426, 616
TspGWI ACGGA 4 cut(s) 462, 579, 647, 932
TspRI CASTG 2 cut(s) 169, 277
VneI GTGCAC 1 cut(s) 617
VpaK11BI GGWCC 4 cut(s) 335, 378, 821, 988
XapI RAATTY 1 cut(s) 557
XbaI TCTAGA 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 4 cut(s) 62, 185, 684, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.