Rroxscaffold_7G00215080

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008628
Physical Location & Seq
Forward (+)
65704572 .. 65704988
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215080.1

Sequence Viewer

Length: 303 bp
ATGATTGATGTTACGAATTCTGTTATCACCGATCAACAATATTGTCCGAACAATCAATGCAATCAACAGGCTTCTTCATCAAATGTGCAAATCAGTGATGTTACATTCAGAAACATATGGGGAACCTCGTCTTCCCAAGAAGCAGTGACTCTGAAATGCAGCAAAAGCAAGCCATGCAAGAATATAGTGATGGAGAATATCAAGTTACCTCATAATGGTCCCAAAGGAGCGGCGACTTCCATATGTGATAATGTCATCGGCAACTTTATGGCTCACACATCCCTCCCAGTTGCATATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

100

Amino Acids

10.86

Weight (kDa)

8.32

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 1 - 85 1.4e-18 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 230
AciI CCGC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 171
BccI CCATC 1 cut(s) 184
BisI GCNGC 2 cut(s) 160, 231
BlsI GCNGC 2 cut(s) 161, 232
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 124, 220
BmrI ACTGGG 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 287
BseGI GGATG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 171
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 124, 220
BsrBI CCGCTC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 287
BssMI GATC 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 278
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 165, 174
BstV1I GCAGC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 278
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 100, 150
Cac8I GCNNGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 218
CviAII CATG 1 cut(s) 174
CviJI RGCY 3 cut(s) 71, 172, 272
CviKI_1 RGCY 3 cut(s) 71, 172, 272
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 16
FaeI CATG 1 cut(s) 177
FaqI GGGAC 1 cut(s) 204
FatI CATG 1 cut(s) 173
FauNDI CATATG 2 cut(s) 116, 242
Fnu4HI GCNGC 2 cut(s) 160, 231
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 160, 231
GluI GCNGC 2 cut(s) 160, 231
Hin1II CATG 1 cut(s) 177
HinfI GANTC 1 cut(s) 148
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 48, 110, 153
HpyCH4V TGCA 5 cut(s) 60, 88, 159, 177, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 174
Hsp92II CATG 1 cut(s) 177
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 1 cut(s) 53
Lsp1109I GCAGC 1 cut(s) 171
MaeIII GTNAC 4 cut(s) 10, 100, 145, 204
MalI GATC 1 cut(s) 33
MbiI CCGCTC 1 cut(s) 230
MboI GATC 1 cut(s) 31
MboII GAAGA 2 cut(s) 66, 123
MluCI AATT 1 cut(s) 16
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 3 cut(s) 136, 219, 293
MslI CAYNNNNRTG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 165, 174
NdeI CATATG 2 cut(s) 116, 242
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 177
NlaIV GGNNCC 2 cut(s) 124, 220
NmuCI GTSAC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 161, 232
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 124, 220
PspPI GGNCC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 298
SatI GCNGC 2 cut(s) 160, 231
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 142
SetI ASST 2 cut(s) 128, 211
SgeI CNNG 8 cut(s) 80, 139, 149, 181, 186, 190, 214, 299
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 298
Sse9I AATT 1 cut(s) 16
SsiI CCGC 1 cut(s) 230
SspI AATATT 1 cut(s) 41
TasI AATT 1 cut(s) 16
TauI GCSGC 1 cut(s) 233
TscAI CASTG 2 cut(s) 100, 150
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 2 cut(s) 100, 150
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.