Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008628

Physical Location & Seq

Genomic Coordinates Reverse (-)

9926216 .. 9926506

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGATCGAACTCGACTTCTAATCTTAACCTTCTTTTACCGACTTTCTTCAACGCTGTGCAGCCATCGCGTGTGCAGATCAGCAATGTTCATTACATAAACATTAAAGGGACAACACCGTCAAATGTGGCAGTAGATTTCATTTGCAGCAGTCAGGTTCCTTGCCAAAACATCCAGCTTCACGACATTGATTTGAAGTATATTGGTCCACATGCTGCAGCTCTCACCTCGGTATGTAAAAATGTAAAAGCTGGTTTTCGTGGCATACAAAACCCACCAGCCTGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010393 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019863 GO:0019865 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044877 GO:0045488 GO:0045490 GO:0047911 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

97

Amino Acids

10.45

Weight (kDa)

9.13

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	21 - 84	5e-10	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02790
fragaria_vesca	FvH4_4g18750 FvH4_4g18750 FvH4_4g18750
malus_domestica	MD13G1163700.v1.1 MD16G1163200.v1.1
prunus_persica	Prupe.1G130700_v2.0.a1 Prupe.1G131100_v2.0.a1
pyrus_communis	pycom13g13940 pycom16g13830
rosa_chinensis	RchiOBHm_Chr4g0423531 RchiOBHm_Chr4g0423541
rosa_laevigata	RLG00000007551
rosa_multiflora	Rmu_sc0005267.1_g000015 Rmu_sc0005794.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365750 Rroxscaffold_7G00215080
rosa_rugosa	Rorug04G0188600
rosa_samantha	Rh4AG247600 Rh4BG252800 Rh4CG261200 Rh4DG248200
rosa_wichuraiana	Rw4G021210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	118
AccII	CGCG	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	52, 196
AluBI	AGCT	3 cut(s)	178, 221, 251
AluI	AGCT	3 cut(s)	178, 221, 251
ApeKI	GCWGC	4 cut(s)	61, 147, 215, 218
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	206
BbvI	GCAGC	4 cut(s)	73, 159, 202, 230
BccI	CCATC	1 cut(s)	73
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	4 cut(s)	62, 148, 216, 219
BlsI	GCNGC	4 cut(s)	63, 149, 217, 220
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	91
BseXI	GCAGC	4 cut(s)	73, 159, 202, 230
BsgI	GTGCAG	2 cut(s)	80, 95
Bsh1236I	CGCG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	5, 78
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	5, 78
Bst4CI	ACNGT	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	8, 81
BstMBI	GATC	2 cut(s)	5, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	4 cut(s)	73, 159, 202, 230
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	5 cut(s)	64, 178, 221, 251, 281
CviKI_1	RGCY	5 cut(s)	64, 178, 221, 251, 281
DpnI	GATC	2 cut(s)	7, 80
DpnII	GATC	2 cut(s)	5, 78
DrdI	GACNNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	206
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	98, 201, 213, 235, 266
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	62, 148, 216, 219
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	4 cut(s)	62, 148, 216, 219
GluI	GCNGC	4 cut(s)	62, 148, 216, 219
Hin1II	CATG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	61, 76, 147, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	5, 78
LpnPI	CCDG	3 cut(s)	140, 188, 237
Lsp1109I	GCAGC	4 cut(s)	73, 159, 202, 230
MalI	GATC	2 cut(s)	7, 80
MboI	GATC	2 cut(s)	5, 78
MboII	GAAGA	1 cut(s)	40
MnlI	CCTC	1 cut(s)	238
MseI	TTAA	2 cut(s)	27, 105
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	2 cut(s)	5, 78
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	215
PkrI	GCNGC	4 cut(s)	63, 149, 217, 220
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	27, 105
SatI	GCNGC	4 cut(s)	62, 148, 216, 219
Sau3AI	GATC	2 cut(s)	5, 78
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	6 cut(s)	33, 159, 180, 223, 230, 253
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	8, 14
Tru1I	TTAA	2 cut(s)	27, 105
Tru9I	TTAA	2 cut(s)	27, 105
TseI	GCWGC	4 cut(s)	61, 147, 215, 218
TspDTI	ATGAA	2 cut(s)	80, 130
VpaK11BI	GGWCC	1 cut(s)	206
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.