Prupe.1G131100_v2.0.a1

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
10249847 .. 10252188
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G131100.1

Sequence Viewer

Length: 1272 bp
ATGGCCATTGCAGGAATGTCGAGCCACGCCATTCTTATCTTGTGCTTAGCTGCACTGGCCTGTCAAGCCGCCGCAACCGCAGTTACCCTGGTTGTGCCCGATATTTTCCGTGGCACTAATTTGGGTGTCCATGACAAAGTGGATCCTACAGAGAAAATCTTTAACGTGTTGGATCATGGCGCCAAGCCTGATGGGTCTGGCGATTCAAGCATTGCTTTCATACAAACATGGATTGCAGCATGCCGCAACCACACCGGGAGATCAAGGGTTGTAATCCCAAAAGGGACTTTCAAGACTGGGCCAGTCATATTTCAAGGGCCATGCAGCTGCTCAAAACCCATTGTTGTTCAAGTTTCAGGGACCATCAAAGGCCTGAATGATATTTCCTTGTATGAAGAACCATTCTGGTTCTTGTTTGAACATGTAGAGGGCTTGGTCCTCACAGGCAATGGCGTCTTTGATGGGCAAGGTTCAAGTTCCTGGAAAAACATTGATGGCTGCAGCAGTTGCAGTCCACTCCCAGCTAGCATCAAATTTAACGGTGTCAAAAACGGGGTCATCCGAGGCATCACCTCCCTTAACAGCAAAGGAGTTCACGTTTTCCTCACTAACAGCCAGAACATTAGGGTGCGAGGAGTGAACATCTCTGCCCCTGACACAAGCCCCAACACTGACGGCATCCACATCAGCAACTCCAACAACATAAAGATCGCCAGAGTTCACATTGGAACTGGTGATGATTGCATTGGCATGATTCAGGGATCCACCAACGTTGCCATCAACAATGTTGTCTGTGGCCCTGGACATGGCATCAGTATCGGTAGCCTTGGCAAGTATCAGAATGAAAATGACGTGACGGGGATCATCGTGAAGAAGACGACGTTTTTGAACACAGACAATGGGATTAGAATCAAATCATGGCCAGGATCGACCCCAAGCCGAGCCTCAGGCATGATTTTCCAGGACCTTATCATGCAGAATGTTAAGAAACCCATCATAATTGACCAAGAGTATTGCGCAGGGGGCTGCAACAAGAACCAGCCATCACGCGTACAGATCAGCAATGTTCACTACATAAACATCAAAGGGACCACAGCATCAAAGATTGCAGTGGATTTCATTTGCAGCAGCCAGTTCCCTTGCAAAAATGTTGAGCTTCGGGACATCAATTTGAACTACATTGGTCCCAGCAATGGCGGGCCTATCACCTCCATATGCAAAAATGCAGAAGTAGGATTTGGTGGCATACAAAACCCACCAGCCTGCCATTAA

Protein Analysis

424

Amino Acids

44.79

Weight (kDa)

8.67

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1018
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 1 cut(s) 1050
AciI CCGC 5 cut(s) 69, 72, 78, 244, 1197
AclI AACGTT 1 cut(s) 771
AclWI GGATC 7 cut(s) 137, 150, 180, 756, 769, 869, 934
AcoI YGGCCR 2 cut(s) 3, 920
AcsI RAATTY 1 cut(s) 533
AcyI GRCGYC 2 cut(s) 180, 453
AfaI GTAC 1 cut(s) 1053
AfiI CCNNNNNNNGG 2 cut(s) 806, 1193
AflIII ACRYGT 3 cut(s) 165, 421, 1048
AgsI TTSAA 8 cut(s) 207, 292, 314, 350, 419, 474, 889, 1174
AjiI CACGTC 1 cut(s) 853
AjnI CCWGG 5 cut(s) 87, 479, 799, 922, 960
AjuI GAANNNNNNNTTGG 2 cut(s) 1221, 1253
AluBI AGCT 4 cut(s) 50, 327, 524, 1156
AluI AGCT 4 cut(s) 50, 327, 524, 1156
AlwI GGATC 7 cut(s) 137, 150, 180, 756, 769, 869, 934
AoxI GGCC 8 cut(s) 3, 57, 299, 317, 370, 796, 920, 1199
ApeKI GCWGC 9 cut(s) 50, 236, 324, 327, 498, 501, 1026, 1125, 1128
ApoI RAATTY 1 cut(s) 533
ArsI GACNNNNNNTTYG 4 cut(s) 540, 572, 868, 900
AspLEI GCGC 2 cut(s) 182, 1019
AspS9I GGNCC 9 cut(s) 299, 317, 360, 436, 797, 964, 1089, 1184, 1199
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 3 cut(s) 562, 746, 1198
AsuNHI GCTAGC 1 cut(s) 524
AvaII GGWCC 5 cut(s) 360, 436, 964, 1089, 1184
AxyI CCTNAGG 1 cut(s) 946
BaeGI GKGCMC 1 cut(s) 99
BalI TGGCCA 2 cut(s) 5, 922
BamHI GGATCC 2 cut(s) 142, 761
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 881
BbvI GCAGC 9 cut(s) 37, 248, 314, 336, 485, 513, 1013, 1137, 1140
BccI CCATC 7 cut(s) 185, 371, 455, 488, 785, 1001, 1051
BceAI ACGGC 1 cut(s) 691
BcgI CGANNNNNNTGC 3 cut(s) 34, 799, 833
BciT130I CCWGG 5 cut(s) 89, 481, 801, 924, 962
BcnI CCSGG 1 cut(s) 256
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 2 cut(s) 147, 499
BfoI RGCGCY 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 46
Bme1390I CCNGG 6 cut(s) 89, 256, 481, 801, 924, 962
Bme18I GGWCC 5 cut(s) 360, 436, 964, 1089, 1184
BmgBI CACGTC 1 cut(s) 853
BmgT120I GGNCC 9 cut(s) 299, 317, 360, 436, 797, 964, 1089, 1184, 1199
BmiI GGNNCC 6 cut(s) 144, 181, 361, 763, 1090, 1186
BmrFI CCNGG 6 cut(s) 89, 256, 481, 801, 924, 962
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 5 cut(s) 537, 576, 687, 819, 1106
BmtI GCTAGC 1 cut(s) 528
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 881
Bpu1102I GCTNAGC 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 908
BsaHI GRCGYC 2 cut(s) 180, 453
BsaJI CCNNGG 5 cut(s) 87, 109, 562, 799, 826
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 806, 1193
Bse1I ACTGG 5 cut(s) 60, 301, 302, 736, 1132
Bse21I CCTNAGG 1 cut(s) 946
Bse3DI GCAATG 5 cut(s) 6, 210, 454, 1069, 1198
Bse8I GATNNNNATC 1 cut(s) 908
BseBI CCWGG 5 cut(s) 89, 481, 801, 924, 962
BseDI CCNNGG 5 cut(s) 87, 109, 562, 799, 826
BseGI GGATG 2 cut(s) 558, 678
BseJI GATNNNNATC 1 cut(s) 908
BseLI CCNNNNNNNGG 2 cut(s) 806, 1193
BseMI GCAATG 5 cut(s) 6, 210, 454, 1069, 1198
BseMII CTCAG 1 cut(s) 960
BseNI ACTGG 5 cut(s) 60, 301, 302, 736, 1132
BseRI GAGGAG 1 cut(s) 648
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 9 cut(s) 37, 248, 314, 336, 485, 513, 1013, 1137, 1140
BseYI CCCAGC 2 cut(s) 520, 1187
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 1050
BshFI GGCC 8 cut(s) 5, 59, 301, 319, 372, 798, 922, 1201
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 5 cut(s) 298, 373, 1102, 1170, 1175
BslI CCNNNNNNNGG 2 cut(s) 806, 1193
BsmFI GGGAC 5 cut(s) 298, 373, 1102, 1170, 1175
BsnI GGCC 8 cut(s) 5, 59, 301, 319, 372, 798, 922, 1201
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 8 cut(s) 142, 172, 260, 708, 761, 861, 926, 1056
Bsp1720I GCTNAGC 1 cut(s) 46
BspACI CCGC 5 cut(s) 69, 72, 78, 244, 1197
BspANI GGCC 8 cut(s) 5, 59, 301, 319, 372, 798, 922, 1201
BspCNI CTCAG 1 cut(s) 959
BspFNI CGCG 1 cut(s) 1050
BspLI GGNNCC 6 cut(s) 144, 181, 361, 763, 1090, 1186
BspMAI CTGCAG 1 cut(s) 503
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 7 cut(s) 137, 150, 180, 756, 769, 869, 934
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 5 cut(s) 6, 210, 454, 1069, 1198
BsrI ACTGG 5 cut(s) 60, 301, 302, 736, 1132
BssECI CCNNGG 5 cut(s) 87, 109, 562, 799, 826
BssMI GATC 8 cut(s) 142, 172, 260, 708, 761, 861, 926, 1056
BssNI GRCGYC 2 cut(s) 180, 453
BssT1I CCWWGG 1 cut(s) 826
Bst2UI CCWGG 5 cut(s) 89, 481, 801, 924, 962
Bst4CI ACNGT 1 cut(s) 542
BstACI GRCGYC 2 cut(s) 180, 453
BstAPI GCANNNNNTGC 1 cut(s) 507
BstC8I GCNNGC 4 cut(s) 241, 526, 1199, 1264
BstDEI CTNAG 2 cut(s) 46, 946
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 558, 678
BstFNI CGCG 1 cut(s) 1050
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 182, 1019
BstKTI GATC 8 cut(s) 145, 175, 263, 711, 764, 864, 929, 1059
BstMBI GATC 8 cut(s) 142, 172, 260, 708, 761, 861, 926, 1056
BstMWI GCNNNNNNNGC 6 cut(s) 56, 65, 77, 207, 507, 1023
BstNI CCWGG 5 cut(s) 89, 481, 801, 924, 962
BstNSI RCATGY 2 cut(s) 243, 425
BstSCI CCNGG 6 cut(s) 87, 254, 479, 799, 922, 960
BstSFI CTRYAG 2 cut(s) 147, 499
BstSLI GKGCMC 1 cut(s) 99
BstUI CGCG 1 cut(s) 1050
BstV1I GCAGC 9 cut(s) 37, 248, 314, 336, 485, 513, 1013, 1137, 1140
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 2 cut(s) 142, 761
BstYI RGATCY 2 cut(s) 142, 761
Bsu36I CCTNAGG 1 cut(s) 946
BsuRI GGCC 8 cut(s) 5, 59, 301, 319, 372, 798, 922, 1201
BtgI CCRYGG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 2 cut(s) 558, 678
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 3 cut(s) 53, 669, 1116
Cac8I GCNNGC 4 cut(s) 241, 526, 1199, 1264
CfoI GCGC 2 cut(s) 182, 1019
Cfr13I GGNCC 9 cut(s) 299, 317, 360, 436, 797, 964, 1089, 1184, 1199
CseI GACGC 1 cut(s) 442
Csp6I GTAC 1 cut(s) 1052
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviQI GTAC 1 cut(s) 1052
DdeI CTNAG 2 cut(s) 46, 946
DinI GGCGCC 1 cut(s) 181
DpnI GATC 8 cut(s) 144, 174, 262, 710, 763, 863, 928, 1058
DpnII GATC 8 cut(s) 142, 172, 260, 708, 761, 861, 926, 1056
EaeI YGGCCR 2 cut(s) 3, 920
Eco130I CCWWGG 1 cut(s) 826
Eco147I AGGCCT 1 cut(s) 372
Eco47I GGWCC 5 cut(s) 360, 436, 964, 1089, 1184
Eco81I CCTNAGG 1 cut(s) 946
EcoO109I RGGNCCY 1 cut(s) 964
EcoRII CCWGG 5 cut(s) 87, 479, 799, 922, 960
EcoT14I CCWWGG 1 cut(s) 826
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 826
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FaqI GGGAC 5 cut(s) 298, 373, 1102, 1170, 1175
FauI CCCGC 1 cut(s) 1190
FauNDI CATATG 1 cut(s) 1214
FokI GGATG 2 cut(s) 545, 665
FspBI CTAG 1 cut(s) 525
FspI TGCGCA 1 cut(s) 1018
GlaI GCGC 2 cut(s) 181, 1018
GsaI CCCAGC 2 cut(s) 524, 1191
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 8 cut(s) 5, 59, 301, 319, 372, 798, 922, 1201
HapII CCGG 1 cut(s) 255
HgaI GACGC 1 cut(s) 442
HhaI GCGC 2 cut(s) 182, 1019
Hin1I GRCGYC 2 cut(s) 180, 453
Hin6I GCGC 2 cut(s) 180, 1017
HinP1I GCGC 2 cut(s) 180, 1017
HinfI GANTC 3 cut(s) 203, 754, 909
HpaII CCGG 1 cut(s) 255
HphI GGTGA 3 cut(s) 562, 746, 1198
Hpy166II GTNNAC 5 cut(s) 515, 595, 640, 721, 1069
Hpy188I TCNGA 2 cut(s) 563, 840
Hpy188III TCNNGA 3 cut(s) 292, 868, 1160
Hpy8I GTNNAC 5 cut(s) 515, 595, 640, 721, 1069
Hpy99I CGWCG 1 cut(s) 883
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 5 cut(s) 165, 597, 771, 852, 881
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 65, 77, 207, 507, 1023
HpyF3I CTNAG 2 cut(s) 46, 946
HpySE526I ACGT 5 cut(s) 165, 597, 771, 852, 881
Hsp92I GRCGYC 2 cut(s) 180, 453
HspAI GCGC 2 cut(s) 180, 1017
KasI GGCGCC 1 cut(s) 179
Kzo9I GATC 8 cut(s) 142, 172, 260, 708, 761, 861, 926, 1056
Lsp1109I GCAGC 9 cut(s) 37, 248, 314, 336, 485, 513, 1013, 1137, 1140
LweI GCATC 5 cut(s) 537, 576, 687, 819, 1106
MaeI CTAG 1 cut(s) 525
MaeII ACGT 5 cut(s) 165, 597, 771, 852, 881
MaeIII GTNAC 2 cut(s) 82, 853
MalI GATC 8 cut(s) 144, 174, 262, 710, 763, 863, 928, 1058
MboI GATC 8 cut(s) 142, 172, 260, 708, 761, 861, 926, 1056
MboII GAAGA 3 cut(s) 407, 883, 886
MflI RGATCY 2 cut(s) 142, 761
MhlI GDGCHC 1 cut(s) 99
MlsI TGGCCA 2 cut(s) 5, 922
MluCI AATT 4 cut(s) 118, 533, 999, 1168
MluI ACGCGT 1 cut(s) 1048
MluNI TGGCCA 2 cut(s) 5, 922
Mly113I GGCGCC 1 cut(s) 180
MmeI TCCRAC 2 cut(s) 150, 720
MnlI CCTC 8 cut(s) 421, 449, 557, 583, 614, 626, 955, 1219
Mox20I TGGCCA 2 cut(s) 5, 922
MscI TGGCCA 2 cut(s) 5, 922
MseI TTAA 5 cut(s) 162, 537, 579, 984, 1270
MslI CAYNNNNRTG 2 cut(s) 626, 749
Msp20I TGGCCA 2 cut(s) 5, 922
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 6 cut(s) 89, 256, 481, 801, 924, 962
MvaI CCWGG 5 cut(s) 89, 481, 801, 924, 962
MvnI CGCG 1 cut(s) 1050
MwoI GCNNNNNNNGC 6 cut(s) 56, 65, 77, 207, 507, 1023
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 1 cut(s) 256
NdeI CATATG 1 cut(s) 1214
NdeII GATC 8 cut(s) 142, 172, 260, 708, 761, 861, 926, 1056
NheI GCTAGC 1 cut(s) 524
NlaIV GGNNCC 6 cut(s) 144, 181, 361, 763, 1090, 1186
NmeAIII GCCGAG 1 cut(s) 965
NmuCI GTSAC 1 cut(s) 853
NsbI TGCGCA 1 cut(s) 1018
NspI RCATGY 2 cut(s) 243, 425
PaeI GCATGC 1 cut(s) 243
PceI AGGCCT 1 cut(s) 372
PciI ACATGT 1 cut(s) 421
PfeI GAWTC 3 cut(s) 203, 754, 909
PfoI TCCNGGA 2 cut(s) 479, 960
PluTI GGCGCC 1 cut(s) 183
PpuMI RGGWCCY 1 cut(s) 964
PscI ACATGT 1 cut(s) 421
Psp1406I AACGTT 1 cut(s) 771
Psp5II RGGWCCY 1 cut(s) 964
Psp6I CCWGG 5 cut(s) 87, 479, 799, 922, 960
PspFI CCCAGC 2 cut(s) 520, 1187
PspGI CCWGG 5 cut(s) 87, 479, 799, 922, 960
PspN4I GGNNCC 6 cut(s) 144, 181, 361, 763, 1090, 1186
PspPI GGNCC 9 cut(s) 299, 317, 360, 436, 797, 964, 1089, 1184, 1199
PspPPI RGGWCCY 1 cut(s) 964
PstI CTGCAG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 142, 761
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 1053
RsaNI GTAC 1 cut(s) 1052
RseI CAYNNNNRTG 2 cut(s) 626, 749
SaqAI TTAA 5 cut(s) 162, 537, 579, 984, 1270
Sau3AI GATC 8 cut(s) 142, 172, 260, 708, 761, 861, 926, 1056
Sau96I GGNCC 9 cut(s) 299, 317, 360, 436, 797, 964, 1089, 1184, 1199
ScrFI CCNGG 6 cut(s) 89, 256, 481, 801, 924, 962
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 5 cut(s) 537, 576, 687, 819, 1106
SfcI CTRYAG 2 cut(s) 147, 499
SfoI GGCGCC 1 cut(s) 181
SinI GGWCC 5 cut(s) 360, 436, 964, 1089, 1184
SmiMI CAYNNNNRTG 2 cut(s) 626, 749
SphI GCATGC 1 cut(s) 243
Sse9I AATT 4 cut(s) 118, 533, 999, 1168
SseBI AGGCCT 1 cut(s) 372
SsiI CCGC 5 cut(s) 69, 72, 78, 244, 1197
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 525
StuI AGGCCT 1 cut(s) 372
StyD4I CCNGG 6 cut(s) 87, 254, 479, 799, 922, 960
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 5 cut(s) 168, 600, 774, 855, 884
TaqI TCGA 2 cut(s) 20, 929
TasI AATT 4 cut(s) 118, 533, 999, 1168
TauI GCSGC 3 cut(s) 71, 74, 246
TfiI GAWTC 3 cut(s) 203, 754, 909
Tru1I TTAA 5 cut(s) 162, 537, 579, 984, 1270
Tru9I TTAA 5 cut(s) 162, 537, 579, 984, 1270
TscAI CASTG 3 cut(s) 60, 676, 1116
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 9 cut(s) 50, 236, 324, 327, 498, 501, 1026, 1125, 1128
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 4 cut(s) 208, 408, 858, 1108
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 3 cut(s) 60, 676, 1116
VpaK11BI GGWCC 5 cut(s) 360, 436, 964, 1089, 1184
XapI RAATTY 1 cut(s) 533
XceI RCATGY 2 cut(s) 243, 425
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.