AT1G02910

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011276
Physical Location & Seq
Reverse (-)
655568 .. 658216
2649 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02910.2

Sequence Viewer

Length: 1362 bp
ATGGCTGTGGCTACAGCTCCGTCGCTAAACCGCCATTTCCCCCGCCGCATCTCGAACCTTTACTCGAGAGTTAAGCAACGAAGGCCATGGCTGCCACCAGGAGACGCGACCCTTTTCAATTCTCGCCGGAATTGGGATTCCCATCTGTTTGTTTACGCTTCCTCTTCTTCTTCTCCGTCGTCGTCGCCTCCGTCTCCAAATTCACCGACGGATGATCTCACGGCAGAGTTGTGCGTCAATACTGGTCTTGATCTCTTTAAGAGAGGACGGGTGAAAGATGCTCTTGTTCAGTTTGAAACTGCACTGAGTTTGGCTCCAAATCCTATTGAGTCACAAGCTGCTTACTATAACAAAGCATGTTGTCATGCTTACCGGGGCGAAGGAAAAAAAGCTGTGGATTGCTTGCGAATTGCGTTGAGAGATTATAATCTGAAGTTTGCCACGATTCTTAACGATCCTGATTTAGCATCCTTTCGCGCATTACCCGAGTTTAAGGAGCTGCAAGAAGAGGCTAGGTTAGGCGGGGAAGATATTGGCGATAATTTCCGGAGAGATCTGAAACTTATCAGTGAAGTACGAGCACCGTTTCGTGGCGTTAGAAAATTCTTTTATTTTGCATTTGCAGCAGCAGCGGGTATCTCAATGTTCTTTACCGTACCAAGACTGGTTCAGGCAATTAGAGGCGGTGATGGTGCTCCAAATCTTCTGGAAACTACGGGAAATGCTGCAATTAACATTGGAGGTATTGTTGTTATGGTTTCATTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTTCAAATAACTCGAGACGAAACTCTTTCCCGGTTGCCTCTACGCCTGTCAACCAACCGCGTTGTTGAACTTGTGCAGCTAAGGGATACAGTTCGACCTGTTATTCTAGCTGGGAAAAAAGAGACTGTTACACTTGCGATGCAAAAAGCAGATAGGTTCAGAACCGAGCTCCTAAGACGAGGTGTTCTCTTAGTTCCTGTGGTATGGGGTGAACGCAAAACACCGGAAATCGAGAAAAAAGGTTTTGGAGCTTCTTCAAAGGCAGCTACATCTCTTCCTTCAATTGGGGAAGATTTTGATACACGGGCTCAATCGGTTGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCCGAGACTGTTTCGCCTGGTGAATGGGAAAGGTGGATAAGAGATCAACAGATATCTGAAGGAGTTAACCCGGGCGATGATGTGTACATCATACTGCGGTTAGATGGTCGAGTCCGCAGATCGGGTAGAGGGATGCCGGATTGGGCTGAGATATCGAAGGAGTTACCGCCAATGGATGACGTTCTCAGCAAGTTAGAAAGATGA

Protein Analysis

453

Amino Acids

50.74

Weight (kDa)

9.37

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 183 - 260 1.6e-26 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02910 AT1G02910
fragaria_vesca FvH4_2g25340 FvH4_2g25340 FvH4_2g25340 FvH4_2g25340
malus_domestica MD03G1284800.v1.1 MD11G1304300.v1.1
prunus_persica Prupe.8G257900_v2.0.a1
pyrus_communis pycom11g26620
rosa_chinensis RchiOBHm_Chr6g0293521
rosa_laevigata RLG00000011944
rosa_multiflora Rmu_sc0006269.1_g000009
rosa_roxburghii Rroxscaffold_7G00174120
rosa_rugosa Rorug06G0236000 Rorug06G0236100.1
rosa_samantha Rh6AG348800 Rh6CG362900 Rh6DG349800
rosa_wichuraiana Rw6G030350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AccII CGCG 3 cut(s) 107, 477, 861
AccIII TCCGGA 1 cut(s) 546
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 2 cut(s) 199, 602
AcuI CTGAAG 2 cut(s) 452, 1236
AfaI GTAC 3 cut(s) 576, 657, 1244
AfiI CCNNNNNNNGG 4 cut(s) 133, 590, 1085, 1279
AgsI TTSAA 7 cut(s) 118, 296, 806, 869, 1059, 1083, 1156
AjnI CCWGG 2 cut(s) 97, 1174
Alw21I GWGCWC 3 cut(s) 583, 697, 972
Alw26I GTCTC 5 cut(s) 96, 198, 810, 917, 1157
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 4 cut(s) 64, 485, 813, 1228
Aor13HI TCCGGA 1 cut(s) 546
AoxI GGCC 2 cut(s) 83, 1158
ApeKI GCWGC 9 cut(s) 91, 338, 499, 623, 626, 629, 725, 877, 1064
ApoI RAATTY 2 cut(s) 199, 602
AspLEI GCGC 1 cut(s) 479
AsuC2I CCSGG 4 cut(s) 374, 832, 1229, 1230
AsuHPI GGTGA 6 cut(s) 195, 283, 698, 1022, 1154, 1190
AvaI CYCGRG 4 cut(s) 64, 485, 813, 1228
BanII GRGCYC 2 cut(s) 972, 1111
Bbv12I GWGCWC 3 cut(s) 583, 697, 972
BbvI GCAGC 9 cut(s) 78, 325, 486, 635, 638, 641, 712, 889, 1076
BccI CCATC 3 cut(s) 150, 683, 1256
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 2 cut(s) 99, 1176
BciVI GTATCC 1 cut(s) 880
BcnI CCSGG 4 cut(s) 374, 832, 1229, 1230
BcoDI GTCTC 5 cut(s) 96, 198, 810, 917, 1157
BfaI CTAG 2 cut(s) 513, 908
BfmI CTRYAG 1 cut(s) 12
BfuI GTATCC 1 cut(s) 880
BglII AGATCT 1 cut(s) 553
Bme1390I CCNGG 6 cut(s) 99, 374, 832, 1176, 1229, 1230
BmeT110I CYCGRG 4 cut(s) 64, 485, 813, 1228
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 6 cut(s) 99, 374, 832, 1176, 1229, 1230
BmsI GCATC 5 cut(s) 57, 268, 476, 930, 1281
BplI GAGNNNNNCTC 4 cut(s) 298, 330, 972, 1004
Bpu10I CCTNAGC 1 cut(s) 881
BpuMI CCSGG 4 cut(s) 374, 832, 1229, 1230
BsaBI GATNNNNATC 2 cut(s) 141, 426
BsaJI CCNNGG 3 cut(s) 86, 373, 1228
BsaWI WCCGGW 2 cut(s) 546, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 590, 1085, 1279
Bse1I ACTGG 2 cut(s) 247, 669
Bse8I GATNNNNATC 2 cut(s) 141, 426
BseAI TCCGGA 1 cut(s) 546
BseBI CCWGG 2 cut(s) 99, 1176
BseDI CCNNGG 3 cut(s) 86, 373, 1228
BseGI GGATG 4 cut(s) 217, 467, 1296, 1339
BseJI GATNNNNATC 2 cut(s) 141, 426
BseLI CCNNNNNNNGG 4 cut(s) 133, 590, 1085, 1279
BseMII CTCAG 3 cut(s) 296, 1296, 1357
BseNI ACTGG 2 cut(s) 247, 669
BseXI GCAGC 9 cut(s) 78, 325, 486, 635, 638, 641, 712, 889, 1076
BseYI CCCAGC 1 cut(s) 911
BsgI GTGCAG 2 cut(s) 285, 896
Bsh1236I CGCG 3 cut(s) 107, 477, 861
BshFI GGCC 2 cut(s) 85, 1160
BsiHKAI GWGCWC 3 cut(s) 583, 697, 972
BsiHKCI CYCGRG 4 cut(s) 64, 485, 813, 1228
BsiSI CCGG 7 cut(s) 127, 373, 547, 832, 1025, 1229, 1295
BslI CCNNNNNNNGG 4 cut(s) 133, 590, 1085, 1279
BsmAI GTCTC 5 cut(s) 96, 198, 810, 917, 1157
BsmBI CGTCTC 3 cut(s) 96, 198, 810
BsnI GGCC 2 cut(s) 85, 1160
BsoBI CYCGRG 4 cut(s) 64, 485, 813, 1228
Bsp1286I GDGCHC 4 cut(s) 583, 697, 972, 1111
Bsp13I TCCGGA 1 cut(s) 546
Bsp1407I TGTACA 1 cut(s) 1242
Bsp143I GATC 6 cut(s) 214, 250, 454, 553, 1201, 1277
Bsp19I CCATGG 1 cut(s) 86
BspANI GGCC 2 cut(s) 85, 1160
BspCNI CTCAG 3 cut(s) 297, 1297, 1356
BspEI TCCGGA 1 cut(s) 546
BspFNI CGCG 3 cut(s) 107, 477, 861
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 1242
BsrI ACTGG 2 cut(s) 247, 669
BssECI CCNNGG 3 cut(s) 86, 373, 1228
BssMI GATC 6 cut(s) 214, 250, 454, 553, 1201, 1277
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 99, 1176
Bst4CI ACNGT 5 cut(s) 585, 655, 892, 928, 1168
Bst6I CTCTTC 3 cut(s) 169, 501, 1080
BstAUI TGTACA 1 cut(s) 1242
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 6 cut(s) 305, 881, 974, 991, 1305, 1343
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 4 cut(s) 217, 467, 1296, 1339
BstFNI CGCG 3 cut(s) 107, 477, 861
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 6 cut(s) 217, 253, 457, 556, 1204, 1280
BstMAI GTCTC 5 cut(s) 96, 198, 810, 917, 1157
BstMBI GATC 6 cut(s) 214, 250, 454, 553, 1201, 1277
BstMWI GCNNNNNNNGC 4 cut(s) 82, 91, 623, 629
BstNI CCWGG 2 cut(s) 99, 1176
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 6 cut(s) 97, 372, 830, 1174, 1227, 1228
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 3 cut(s) 107, 477, 861
BstV1I GCAGC 9 cut(s) 78, 325, 486, 635, 638, 641, 712, 889, 1076
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuI GTATCC 1 cut(s) 880
BsuRI GGCC 2 cut(s) 85, 1160
BtgI CCRYGG 1 cut(s) 86
BtgZI GCGATG 2 cut(s) 953, 1248
BtsCI GGATG 4 cut(s) 217, 467, 1296, 1339
BtsIMutI CAGTG 2 cut(s) 302, 574
Cac8I GCNNGC 1 cut(s) 404
CfoI GCGC 1 cut(s) 479
Cfr9I CCCGGG 1 cut(s) 1228
CseI GACGC 2 cut(s) 113, 223
Csp6I GTAC 3 cut(s) 575, 656, 1243
CviAII CATG 3 cut(s) 87, 357, 365
CviQI GTAC 3 cut(s) 575, 656, 1243
DdeI CTNAG 6 cut(s) 305, 881, 974, 991, 1305, 1343
DpnI GATC 6 cut(s) 216, 252, 456, 555, 1203, 1279
DpnII GATC 6 cut(s) 214, 250, 454, 553, 1201, 1277
Eam1104I CTCTTC 3 cut(s) 169, 501, 1080
EarI CTCTTC 3 cut(s) 169, 501, 1080
Ecl136II GAGCTC 1 cut(s) 970
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 2 cut(s) 972, 1111
Eco32I GATATC 2 cut(s) 1212, 1311
Eco53kI GAGCTC 1 cut(s) 970
Eco57I CTGAAG 2 cut(s) 452, 1236
Eco88I CYCGRG 4 cut(s) 64, 485, 813, 1228
EcoICRI GAGCTC 1 cut(s) 970
EcoRII CCWGG 2 cut(s) 97, 1174
EcoRV GATATC 2 cut(s) 1212, 1311
EcoT14I CCWWGG 1 cut(s) 86
EcoT38I GRGCYC 2 cut(s) 972, 1111
ErhI CCWWGG 1 cut(s) 86
Esp3I CGTCTC 3 cut(s) 96, 198, 810
FaeI CATG 3 cut(s) 90, 360, 368
FaiI YATR 8 cut(s) 88, 348, 358, 366, 426, 755, 1006, 1250
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 3 cut(s) 86, 356, 364
FauI CCCGC 3 cut(s) 50, 515, 625
FokI GGATG 4 cut(s) 224, 454, 1303, 1346
FriOI GRGCYC 2 cut(s) 972, 1111
FspBI CTAG 2 cut(s) 513, 908
GlaI GCGC 1 cut(s) 478
GsaI CCCAGC 1 cut(s) 915
HaeIII GGCC 2 cut(s) 85, 1160
HapII CCGG 7 cut(s) 127, 373, 547, 832, 1025, 1229, 1295
HgaI GACGC 2 cut(s) 113, 223
HhaI GCGC 1 cut(s) 479
Hin1II CATG 3 cut(s) 90, 360, 368
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HincII GTYRAC 2 cut(s) 852, 1225
HindII GTYRAC 2 cut(s) 852, 1225
HinfI GANTC 4 cut(s) 137, 329, 445, 1269
HpaI GTTAAC 1 cut(s) 1225
HpaII CCGG 7 cut(s) 127, 373, 547, 832, 1025, 1229, 1295
HphI GGTGA 6 cut(s) 195, 283, 698, 1022, 1154, 1190
Hpy166II GTNNAC 5 cut(s) 154, 852, 1013, 1225, 1243
Hpy188I TCNGA 4 cut(s) 432, 558, 962, 1216
Hpy188III TCNNGA 8 cut(s) 52, 66, 248, 458, 547, 707, 815, 1033
Hpy8I GTNNAC 5 cut(s) 154, 852, 1013, 1225, 1243
Hpy99I CGWCG 5 cut(s) 25, 181, 184, 187, 211
HpyAV CCTTC 5 cut(s) 75, 374, 1089, 1211, 1309
HpyCH4III ACNGT 5 cut(s) 585, 655, 892, 928, 1168
HpyCH4IV ACGT 1 cut(s) 1338
HpyCH4V TGCA 7 cut(s) 302, 502, 617, 623, 728, 877, 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 91, 623, 629
HpyF3I CTNAG 6 cut(s) 305, 881, 974, 991, 1305, 1343
HpySE526I ACGT 1 cut(s) 1338
Hsp92II CATG 3 cut(s) 90, 360, 368
HspAI GCGC 1 cut(s) 477
Kpn2I TCCGGA 1 cut(s) 546
KspAI GTTAAC 1 cut(s) 1225
Kzo9I GATC 6 cut(s) 214, 250, 454, 553, 1201, 1277
LmnI GCTCC 6 cut(s) 22, 319, 496, 700, 975, 1049
Lsp1109I GCAGC 9 cut(s) 78, 325, 486, 635, 638, 641, 712, 889, 1076
LweI GCATC 5 cut(s) 57, 268, 476, 930, 1281
MaeI CTAG 2 cut(s) 513, 908
MaeII ACGT 1 cut(s) 1338
MaeIII GTNAC 3 cut(s) 330, 928, 1320
MalI GATC 6 cut(s) 216, 252, 456, 555, 1203, 1279
MboI GATC 6 cut(s) 214, 250, 454, 553, 1201, 1277
MfeI CAATTG 1 cut(s) 1083
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 4 cut(s) 583, 697, 972, 1111
MluCI AATT 9 cut(s) 118, 130, 199, 408, 541, 602, 675, 729, 1083
MlyI GAGTC 2 cut(s) 338, 1278
MroI TCCGGA 1 cut(s) 546
MseI TTAA 6 cut(s) 72, 258, 450, 492, 732, 1224
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 7 cut(s) 127, 373, 547, 832, 1025, 1229, 1295
MspR9I CCNGG 6 cut(s) 99, 374, 832, 1176, 1229, 1230
MunI CAATTG 1 cut(s) 1083
MvaI CCWGG 2 cut(s) 99, 1176
MvnI CGCG 3 cut(s) 107, 477, 861
MwoI GCNNNNNNNGC 4 cut(s) 82, 91, 623, 629
NciI CCSGG 4 cut(s) 374, 832, 1229, 1230
NcoI CCATGG 1 cut(s) 86
NdeII GATC 6 cut(s) 214, 250, 454, 553, 1201, 1277
NlaIII CATG 3 cut(s) 90, 360, 368
NlaIV GGNNCC 1 cut(s) 315
NmeAIII GCCGAG 1 cut(s) 1186
NmuCI GTSAC 1 cut(s) 330
NspI RCATGY 1 cut(s) 360
PaeR7I CTCGAG 2 cut(s) 64, 813
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 2 cut(s) 137, 445
PleI GAGTC 2 cut(s) 337, 1277
PpsI GAGTC 2 cut(s) 337, 1277
PsiI TTATAA 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 972
Psp6I CCWGG 2 cut(s) 97, 1174
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 2 cut(s) 97, 1174
PspN4I GGNNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 3 cut(s) 576, 657, 1244
RsaNI GTAC 3 cut(s) 575, 656, 1243
SacI GAGCTC 1 cut(s) 972
SaqAI TTAA 6 cut(s) 72, 258, 450, 492, 732, 1224
Sau3AI GATC 6 cut(s) 214, 250, 454, 553, 1201, 1277
SchI GAGTC 2 cut(s) 338, 1278
ScrFI CCNGG 6 cut(s) 99, 374, 832, 1176, 1229, 1230
SduI GDGCHC 4 cut(s) 583, 697, 972, 1111
SfaNI GCATC 5 cut(s) 57, 268, 476, 930, 1281
SfcI CTRYAG 1 cut(s) 12
Sfr274I CTCGAG 2 cut(s) 64, 813
SlaI CTCGAG 2 cut(s) 64, 813
SmaI CCCGGG 1 cut(s) 1230
SmlI CTYRAG 2 cut(s) 64, 813
SmoI CTYRAG 2 cut(s) 64, 813
Sse9I AATT 9 cut(s) 118, 130, 199, 408, 541, 602, 675, 729, 1083
SspMI CTAG 2 cut(s) 513, 908
SstI GAGCTC 1 cut(s) 972
StyD4I CCNGG 6 cut(s) 97, 372, 830, 1174, 1227, 1228
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 5 cut(s) 585, 655, 892, 928, 1168
TaiI ACGT 1 cut(s) 1341
TaqI TCGA 8 cut(s) 53, 65, 814, 895, 1032, 1130, 1267, 1313
TasI AATT 9 cut(s) 118, 130, 199, 408, 541, 602, 675, 729, 1083
TatI WGTACW 1 cut(s) 1242
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 137, 445
Tru1I TTAA 6 cut(s) 72, 258, 450, 492, 732, 1224
Tru9I TTAA 6 cut(s) 72, 258, 450, 492, 732, 1224
TscAI CASTG 2 cut(s) 309, 574
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 9 cut(s) 91, 338, 499, 623, 626, 629, 725, 877, 1064
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 750
TspGWI ACGGA 4 cut(s) 9, 165, 180, 224
TspMI CCCGGG 1 cut(s) 1228
TspRI CASTG 2 cut(s) 309, 574
XapI RAATTY 2 cut(s) 199, 602
XceI RCATGY 1 cut(s) 360
XhoI CTCGAG 2 cut(s) 64, 813
XmaI CCCGGG 1 cut(s) 1228
XspI CTAG 2 cut(s) 513, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.