Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006269.1

Orthogroup ID

OG0011276

Physical Location & Seq

Genomic Coordinates Reverse (-)

30215 .. 33025

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006269.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atggctatggctgctcaggctctgcaccagcagtgtctctgcttctcctcatcaacaacaaggccatggcttcccgccagaaccaccacccttacctttttccaagtccacaagaaacttgcccatcacatcacgctcattccttgctcttcttcaacttctcagtcccctgaagccaatacagaaaccgccgagtcctgtgtcaacttgggcctccagcttttctccaaaggacgggttaaagatgctttagtccagttcgaaacggcacttaatttagatcccaatcctatagaggcccaagcagctctctataataaagcttgctgtcacgcctacagaggggaaggaaggaaagctgctgattgtctacgtacttgcttaagagaatataacctcaaatttggcacaattttgaatgaccctgacttggcctcttttcgagctttgcctgagtataaggaattgcaagaagaggctagaataggtggagaagacataggctacagttttaggagagacttgaaacttattagtgaagtccaagcaccattccgtggggttaggagattcttttatgtggcattctctgcagctgcaggaatctcgacgttcttcactgtacctaggctattccgtgcattttcaggtggtgatggtgctcctgatctcttggaaactgctgggaatgttgctattaatgtcggaggttttacagttcttgtggcattgtttttatgggaaaacaagaaggaagaggaacaacttgcacaaatatctcgtaatgaaagtctgtcaaggctgccattgcgcctctccaccaatagggttgttgaacttgtgcagttgcgggacactgttagacctgtcattttagcagggaagaaggagactgtttcttcaagcatgcagcaggcagcaaggttccgaacggatctcctctcaagaggtgttcttttagttcctgttatctggggtgaagttagggcacctcaaacagagaagaaaggctttggcacaccttcaaaggcagccgccgccctgccttctattggggaagatttcgagaaacgaactcagtctataactgcaaagtcaaaattaaaagctgaaattcgattcaaggctgagattgtatccccggaggaatgggaaagttggataagggagcagcagaagtctgaaggagtcactcctggtgaggatgtctatattatactgcgcctagatggtcgggttcgaagatcaggcaaaggcatgcctgactggcaacaaattttgcaggagctgcctccagtagaagcattgcttagcaaacttgaaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0010270 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3493 TPR_1 TPR_2

Protein Analysis

442

Amino Acids

49.22

Weight (kDa)

8.92

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02910 AT1G02910
fragaria_vesca	FvH4_2g25340 FvH4_2g25340 FvH4_2g25340 FvH4_2g25340
malus_domestica	MD03G1284800.v1.1 MD11G1304300.v1.1
prunus_persica	Prupe.8G257900_v2.0.a1
pyrus_communis	pycom11g26620
rosa_chinensis	RchiOBHm_Chr6g0293521
rosa_laevigata	RLG00000011944
rosa_multiflora	Rmu_sc0006269.1_g000009
rosa_roxburghii	Rroxscaffold_7G00174120
rosa_rugosa	Rorug06G0236000 Rorug06G0236100.1
rosa_samantha	Rh6AG348800 Rh6CG362900 Rh6DG349800
rosa_wichuraiana	Rw6G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	988
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	370
AciI	CCGC	5 cut(s)	75, 189, 850, 1035, 1038
AclWI	GGATC	2 cut(s)	275, 942
AcsI	RAATTY	3 cut(s)	401, 1113, 1275
AcuI	CTGAAG	2 cut(s)	192, 1203
AfaI	GTAC	2 cut(s)	376, 624
AfiI	CCNNNNNNNGG	6 cut(s)	234, 342, 430, 557, 825, 1052
AflII	CTTAAG	1 cut(s)	382
AgsI	TTSAA	8 cut(s)	156, 418, 526, 836, 903, 1026, 1123, 1322
AjnI	CCWGG	1 cut(s)	1195
AluBI	AGCT	8 cut(s)	220, 308, 323, 359, 446, 596, 1109, 1288
AluI	AGCT	8 cut(s)	220, 308, 323, 359, 446, 596, 1109, 1288
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	3 cut(s)	41, 513, 884
AlwI	GGATC	2 cut(s)	275, 942
AlwNI	CAGNNNCTG	2 cut(s)	22, 1288
AoxI	GGCC	4 cut(s)	62, 211, 297, 432
ApoI	RAATTY	3 cut(s)	401, 1113, 1275
AseI	ATTAAT	1 cut(s)	699
AspA2I	CCTAGG	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	813, 1224
AspS9I	GGNCC	2 cut(s)	211, 298
AsuC2I	CCSGG	1 cut(s)	1142
AsuHPI	GGTGA	3 cut(s)	665, 989, 1211
AsuII	TTCGAA	2 cut(s)	261, 1240
AvrII	CCTAGG	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	988
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	664
BccI	CCATC	3 cut(s)	132, 650, 1223
BceAI	ACGGC	1 cut(s)	282
BcgI	CGANNNNNNTGC	2 cut(s)	588, 622
BciT130I	CCWGG	1 cut(s)	1197
BciVI	GTATCC	1 cut(s)	1147
BcnI	CCSGG	1 cut(s)	1142
BcoDI	GTCTC	3 cut(s)	41, 513, 884
BfaI	CTAG	3 cut(s)	480, 627, 1226
BfmI	CTRYAG	5 cut(s)	291, 337, 505, 591, 597
BfrI	CTTAAG	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	1147
BglI	GCCNNNNNGGC	1 cut(s)	1267
BlnI	CCTAGG	1 cut(s)	626
BlpI	GCTNAGC	1 cut(s)	1310
Bme1390I	CCNGG	2 cut(s)	1142, 1197
BmgT120I	GGNCC	2 cut(s)	211, 298
BmiI	GGNNCC	2 cut(s)	926, 990
BmrFI	CCNGG	2 cut(s)	1142, 1197
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	2 cut(s)	200, 1278
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	1310
Bpu14I	TTCGAA	2 cut(s)	261, 1240
BpuEI	CTTGAG	1 cut(s)	928
BpuMI	CCSGG	1 cut(s)	1142
BsaAI	YACGTR	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	65, 556, 626, 1140
Bsc4I	CCNNNNNNNGG	6 cut(s)	234, 342, 430, 557, 825, 1052
Bse1I	ACTGG	3 cut(s)	256, 1271, 1295
Bse3DI	GCAATG	2 cut(s)	806, 1304
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	1197
BseDI	CCNNGG	4 cut(s)	65, 556, 626, 1140
BseGI	GGATG	1 cut(s)	1210
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	6 cut(s)	234, 342, 430, 557, 825, 1052
BseMI	GCAATG	2 cut(s)	806, 1304
BseMII	CTCAG	5 cut(s)	29, 176, 444, 1091, 1119
BseNI	ACTGG	3 cut(s)	256, 1271, 1295
BseRI	GAGGAG	2 cut(s)	37, 929
BseSI	GKGCMC	1 cut(s)	991
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	2 cut(s)	8, 863
BshFI	GGCC	4 cut(s)	64, 213, 299, 434
BshNI	GGYRCC	1 cut(s)	988
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	1142
BslFI	GGGAC	2 cut(s)	151, 866
BslI	CCNNNNNNNGG	6 cut(s)	234, 342, 430, 557, 825, 1052
BsmAI	GTCTC	3 cut(s)	41, 513, 884
BsmFI	GGGAC	2 cut(s)	151, 866
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	4 cut(s)	64, 213, 299, 434
Bsp119I	TTCGAA	2 cut(s)	261, 1240
Bsp1286I	GDGCHC	2 cut(s)	664, 991
Bsp143I	GATC	4 cut(s)	280, 667, 934, 1244
Bsp1720I	GCTNAGC	1 cut(s)	1310
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	5 cut(s)	75, 189, 850, 1035, 1038
BspANI	GGCC	4 cut(s)	64, 213, 299, 434
BspCNI	CTCAG	5 cut(s)	28, 175, 445, 1090, 1120
BspLI	GGNNCC	2 cut(s)	926, 990
BspMAI	CTGCAG	2 cut(s)	595, 601
BspPI	GGATC	2 cut(s)	275, 942
BspQI	GCTCTTC	1 cut(s)	154
BspT104I	TTCGAA	2 cut(s)	261, 1240
BspT107I	GGYRCC	1 cut(s)	988
BspTI	CTTAAG	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	806, 1304
BsrI	ACTGG	3 cut(s)	256, 1271, 1295
BssECI	CCNNGG	4 cut(s)	65, 556, 626, 1140
BssMI	GATC	4 cut(s)	280, 667, 934, 1244
BssT1I	CCWWGG	2 cut(s)	65, 626
Bst2UI	CCWGG	1 cut(s)	1197
Bst4CI	ACNGT	5 cut(s)	509, 622, 718, 859, 895
Bst6I	CTCTTC	3 cut(s)	154, 468, 750
BstAFI	CTTAAG	1 cut(s)	382
BstAPI	GCANNNNNTGC	2 cut(s)	590, 1288
BstBAI	YACGTR	1 cut(s)	374
BstBI	TTCGAA	2 cut(s)	261, 1240
BstC8I	GCNNGC	4 cut(s)	325, 908, 915, 1259
BstDEI	CTNAG	6 cut(s)	15, 162, 453, 1077, 1128, 1310
BstDSI	CCRYGG	2 cut(s)	65, 556
BstF5I	GGATG	1 cut(s)	1210
BstHHI	GCGC	2 cut(s)	813, 1224
BstKTI	GATC	4 cut(s)	283, 670, 937, 1247
BstMAI	GTCTC	3 cut(s)	41, 513, 884
BstMBI	GATC	4 cut(s)	280, 667, 934, 1244
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 17, 305, 590, 808, 1037, 1267, 1288
BstNI	CCWGG	1 cut(s)	1197
BstNSI	RCATGY	2 cut(s)	910, 1261
BstSCI	CCNGG	2 cut(s)	1140, 1195
BstSFI	CTRYAG	5 cut(s)	291, 337, 505, 591, 597
BstSLI	GKGCMC	1 cut(s)	991
BstSNI	TACGTA	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	2 cut(s)	280, 934
BstYI	RGATCY	2 cut(s)	280, 934
BsuI	GTATCC	1 cut(s)	1147
BsuRI	GGCC	4 cut(s)	64, 213, 299, 434
BtgI	CCRYGG	2 cut(s)	65, 556
BtsCI	GGATG	1 cut(s)	1210
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	3 cut(s)	38, 618, 855
Cac8I	GCNNGC	4 cut(s)	325, 908, 915, 1259
CaiI	CAGNNNCTG	2 cut(s)	22, 1288
CfoI	GCGC	2 cut(s)	813, 1224
Cfr13I	GGNCC	2 cut(s)	211, 298
Csp6I	GTAC	2 cut(s)	375, 623
CviAII	CATG	3 cut(s)	66, 907, 1258
CviQI	GTAC	2 cut(s)	375, 623
DdeI	CTNAG	6 cut(s)	15, 162, 453, 1077, 1128, 1310
DpnI	GATC	4 cut(s)	282, 669, 936, 1246
DpnII	GATC	4 cut(s)	280, 667, 934, 1244
Eam1104I	CTCTTC	3 cut(s)	154, 468, 750
EarI	CTCTTC	3 cut(s)	154, 468, 750
Eco105I	TACGTA	1 cut(s)	374
Eco130I	CCWWGG	2 cut(s)	65, 626
Eco57I	CTGAAG	2 cut(s)	192, 1203
EcoRII	CCWGG	1 cut(s)	1195
EcoT14I	CCWWGG	2 cut(s)	65, 626
ErhI	CCWWGG	2 cut(s)	65, 626
FaeI	CATG	3 cut(s)	69, 910, 1261
FalI	AAGNNNNNCTT	4 cut(s)	995, 1027, 1293, 1325
FaqI	GGGAC	2 cut(s)	151, 866
FatI	CATG	3 cut(s)	65, 906, 1257
FauI	CCCGC	2 cut(s)	82, 843
FblI	GTMKAC	1 cut(s)	370
FokI	GGATG	1 cut(s)	1217
FspBI	CTAG	3 cut(s)	480, 627, 1226
GlaI	GCGC	2 cut(s)	812, 1223
GsaI	CCCAGC	1 cut(s)	687
GsuI	CTGGAG	2 cut(s)	200, 1278
HaeIII	GGCC	4 cut(s)	64, 213, 299, 434
HapII	CCGG	1 cut(s)	1142
HhaI	GCGC	2 cut(s)	813, 1224
Hin1II	CATG	3 cut(s)	69, 910, 1261
Hin6I	GCGC	2 cut(s)	811, 1222
HinP1I	GCGC	2 cut(s)	811, 1222
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	5 cut(s)	194, 570, 603, 1119, 1188
HpaII	CCGG	1 cut(s)	1142
HphI	GGTGA	3 cut(s)	665, 989, 1211
Hpy166II	GTNNAC	3 cut(s)	109, 205, 371
Hpy188I	TCNGA	3 cut(s)	707, 929, 1183
Hpy188III	TCNNGA	4 cut(s)	607, 665, 945, 1066
Hpy8I	GTNNAC	3 cut(s)	109, 205, 371
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	7 cut(s)	341, 345, 745, 880, 1032, 1056, 1178
HpyCH4III	ACNGT	5 cut(s)	509, 622, 718, 859, 895
HpyCH4IV	ACGT	2 cut(s)	373, 611
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 17, 305, 590, 808, 1037, 1267, 1288
HpyF3I	CTNAG	6 cut(s)	15, 162, 453, 1077, 1128, 1310
HpySE526I	ACGT	2 cut(s)	373, 611
Hsp92II	CATG	3 cut(s)	69, 910, 1261
HspAI	GCGC	2 cut(s)	811, 1222
Kzo9I	GATC	4 cut(s)	280, 667, 934, 1244
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	3 cut(s)	667, 1168, 1285
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	3 cut(s)	480, 627, 1226
MaeII	ACGT	2 cut(s)	373, 611
MaeIII	GTNAC	2 cut(s)	329, 1189
MalI	GATC	4 cut(s)	282, 669, 936, 1246
MboI	GATC	4 cut(s)	280, 667, 934, 1244
MflI	RGATCY	2 cut(s)	280, 934
MhlI	GDGCHC	2 cut(s)	664, 991
MluCI	AATT	7 cut(s)	274, 401, 411, 464, 1100, 1113, 1275
MlyI	GAGTC	2 cut(s)	203, 1197
MmeI	TCCRAC	2 cut(s)	685, 1139
MseI	TTAA	5 cut(s)	240, 273, 383, 699, 1103
MspA1I	CMGCKG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	382
MspI	CCGG	1 cut(s)	1142
MspR9I	CCNGG	2 cut(s)	1142, 1197
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	1197
MwoI	GCNNNNNNNGC	8 cut(s)	11, 17, 305, 590, 808, 1037, 1267, 1288
NciI	CCSGG	1 cut(s)	1142
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	4 cut(s)	280, 667, 934, 1244
NlaIII	CATG	3 cut(s)	69, 910, 1261
NlaIV	GGNNCC	2 cut(s)	926, 990
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	329, 1189
NspI	RCATGY	2 cut(s)	910, 1261
NspV	TTCGAA	2 cut(s)	261, 1240
PaeI	GCATGC	2 cut(s)	910, 1261
PciSI	GCTCTTC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	3 cut(s)	570, 603, 1119
PflMI	CCANNNNNTGG	1 cut(s)	557
PleI	GAGTC	2 cut(s)	202, 1196
PpsI	GAGTC	2 cut(s)	202, 1196
Ppu21I	YACGTR	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	1195
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	1195
PspN4I	GGNNCC	2 cut(s)	926, 990
PspPI	GGNCC	2 cut(s)	211, 298
PstI	CTGCAG	2 cut(s)	595, 601
PstNI	CAGNNNCTG	2 cut(s)	22, 1288
PsuI	RGATCY	2 cut(s)	280, 934
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	376, 624
RsaNI	GTAC	2 cut(s)	375, 623
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	5 cut(s)	240, 273, 383, 699, 1103
Sau3AI	GATC	4 cut(s)	280, 667, 934, 1244
Sau96I	GGNCC	2 cut(s)	211, 298
SchI	GAGTC	2 cut(s)	203, 1197
ScrFI	CCNGG	2 cut(s)	1142, 1197
SduI	GDGCHC	2 cut(s)	664, 991
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	5 cut(s)	291, 337, 505, 591, 597
SfuI	TTCGAA	2 cut(s)	261, 1240
SmlI	CTYRAG	2 cut(s)	382, 943
SmoI	CTYRAG	2 cut(s)	382, 943
SnaBI	TACGTA	1 cut(s)	374
SphI	GCATGC	2 cut(s)	910, 1261
Sse9I	AATT	7 cut(s)	274, 401, 411, 464, 1100, 1113, 1275
SsiI	CCGC	5 cut(s)	75, 189, 850, 1035, 1038
SspMI	CTAG	3 cut(s)	480, 627, 1226
StyD4I	CCNGG	2 cut(s)	1140, 1195
StyI	CCWWGG	2 cut(s)	65, 626
TaaI	ACNGT	5 cut(s)	509, 622, 718, 859, 895
TaiI	ACGT	2 cut(s)	376, 614
TaqI	TCGA	6 cut(s)	261, 442, 608, 1065, 1117, 1240
TasI	AATT	7 cut(s)	274, 401, 411, 464, 1100, 1113, 1275
TauI	GCSGC	2 cut(s)	1037, 1040
TfiI	GAWTC	3 cut(s)	570, 603, 1119
Tru1I	TTAA	5 cut(s)	240, 273, 383, 699, 1103
Tru9I	TTAA	5 cut(s)	240, 273, 383, 699, 1103
TscAI	CASTG	3 cut(s)	38, 625, 862
TseFI	GTSAC	2 cut(s)	329, 1189
Tsp45I	GTSAC	2 cut(s)	329, 1189
TspDTI	ATGAA	1 cut(s)	801
TspGWI	ACGGA	3 cut(s)	545, 626, 947
TspRI	CASTG	3 cut(s)	38, 625, 862
Van91I	CCANNNNNTGG	1 cut(s)	557
Vha464I	CTTAAG	1 cut(s)	382
VspI	ATTAAT	1 cut(s)	699
XapI	RAATTY	3 cut(s)	401, 1113, 1275
XceI	RCATGY	2 cut(s)	910, 1261
XmaJI	CCTAGG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	370
XspI	CTAG	3 cut(s)	480, 627, 1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.