Rroxscaffold_7G00174120

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011276
Physical Location & Seq
Reverse (-)
13873247 .. 13876544
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174120.1

Sequence Viewer

Length: 1347 bp
ATGGCTATGGCTGCTCAGGCTCTGCACCAGCAGTGTCTCTGCTTCTCCTCAAACCCAATAACAACATCAACAACAAGGCCATGGCTTCCCGCCAGAACCACCACCCTTACCTTTTTCCAAGTCCACAAGAAACTTGCCCATCACATCTCTCTCATTCCTTGCTCTTCTTCTTCAACTTCTCAGTCCCCTGAAGCCAATACAGAAACCGCCGAGTCCTGTGTCAACTTGGGCCTCCAGCTTTTCTCCAAAGGACGGGTTAAAGATGCTTTAGTTCAGTTCGAAACGGCACTTAATTTAGATCCCAATTCTATAGAGGCCCAAGCAGCTCTCTATAATAAAGCTTGCTGTCACGCCTACAGAGGGGAAGGAAGGAAAGCTGCTGATTGTCTACGTACTTGCTTAAGAGAATATAACCTCAAATTTGGCACAATTTTGAATGACCCTGACTTGGCCTCCTTTCGAGCTTTGCCTGAGTATAAGGAATTGCAAGAAGAGGCTAGAATAGGTGGAGAAGACATAGGCTACAGTTTTAGGAGAGACTTGAAACTTATTAGTGAAGTCCAAGCACCATTCCGTGGGGTTAGGAGATTCTTTTATGTGGCATTCTCTGCAGCTGCAGGAATCTCGACGTTCTTCACTGTACCTAGGCTATTCCGTGCATTTTCAGGTGGTGATGGTGCTCCTGATCTCTTGGAAACTGCTGGGAATGTTGCTATTAATGTTGGAGGTTTTACAGTTCTTGTGGCATTGTTTTTATGGGAAAACAAGAAGGAAGAGGAACAACTTGCACAAATATCTCGTAATGAAAGTCTGTCAAGGCTGCCATTGCGCCTCTCCACCAATAGGGTTGTTGAACTTGTGCAGTTGCGGGACACTGTTAGACCTGTCATTTTAGCAGGGAAGAAGGAGACTGTTTCTTCAAGCATGCAGCAGGCAGCGAGGTTCCGAACGGATCTCCTCTCAAGGGGTGTTCTTTTAGTTCCTGTTATCTGGGGTGAAGTTAGGGCACCTCAAGCAGAGAAAAAAGGCTTTGGCACACCTTCAAAGGCAGCCGCCACTCTGCCTTCTATTGGGGAAGATTTCGAGAAACGAACTCAGTCTATAACTGCAAAGTCAAAATTAAAAGCTGAAATTCGATTCAAGGCCGAGATTGTATCCCCTGCGGAATGGGAAAGTTGGATAAGGGATCAGCAGAAGTCTGAAGGAGTCACTCCTGGTGAGGATGTCTACATTATACTGCGCCTAGATGGTCGGGTTCGAAGATCAGGGAAAGGCATGCCTGACTGGCAACAAATTTTGCAGGAGCTGCCTCCAATAGAAGCATTGCTTAGCAAACTTGAAAGATAG

Protein Analysis

448

Amino Acids

49.75

Weight (kDa)

9.02

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 178 - 255 2.6e-24 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02910 AT1G02910
fragaria_vesca FvH4_2g25340 FvH4_2g25340 FvH4_2g25340 FvH4_2g25340
malus_domestica MD03G1284800.v1.1 MD11G1304300.v1.1
prunus_persica Prupe.8G257900_v2.0.a1
pyrus_communis pycom11g26620
rosa_chinensis RchiOBHm_Chr6g0293521
rosa_laevigata RLG00000011944
rosa_multiflora Rmu_sc0006269.1_g000009
rosa_roxburghii Rroxscaffold_7G00174120
rosa_rugosa Rorug06G0236000 Rorug06G0236100.1
rosa_samantha Rh6AG348800 Rh6CG362900 Rh6DG349800
rosa_wichuraiana Rw6G030350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1006
AccB7I CCANNNNNTGG 1 cut(s) 575
AccI GTMKAC 2 cut(s) 388, 1227
AciI CCGC 5 cut(s) 90, 207, 868, 1053, 1163
AclWI GGATC 3 cut(s) 293, 960, 1194
AcsI RAATTY 3 cut(s) 419, 1131, 1293
AcuI CTGAAG 2 cut(s) 210, 1221
AfaI GTAC 2 cut(s) 394, 642
AfiI CCNNNNNNNGG 7 cut(s) 252, 360, 448, 575, 843, 964, 1070
AflII CTTAAG 1 cut(s) 400
AgsI TTSAA 8 cut(s) 174, 436, 544, 854, 921, 1044, 1141, 1340
AjnI CCWGG 1 cut(s) 1213
AluBI AGCT 8 cut(s) 238, 326, 341, 377, 464, 614, 1127, 1306
AluI AGCT 8 cut(s) 238, 326, 341, 377, 464, 614, 1127, 1306
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 3 cut(s) 41, 531, 902
AlwI GGATC 3 cut(s) 293, 960, 1194
AlwNI CAGNNNCTG 2 cut(s) 22, 1306
AoxI GGCC 5 cut(s) 77, 229, 315, 450, 1143
ApoI RAATTY 3 cut(s) 419, 1131, 1293
AseI ATTAAT 1 cut(s) 717
AspA2I CCTAGG 1 cut(s) 644
AspLEI GCGC 2 cut(s) 831, 1242
AspS9I GGNCC 2 cut(s) 229, 316
AsuHPI GGTGA 3 cut(s) 683, 1007, 1229
AsuII TTCGAA 2 cut(s) 279, 1258
AvrII CCTAGG 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 1009
BanI GGYRCC 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 682
BbvI GCAGC 9 cut(s) 335, 364, 601, 623, 807, 940, 947, 1061, 1293
BccI CCATC 3 cut(s) 147, 668, 1241
BceAI ACGGC 1 cut(s) 300
BcgI CGANNNNNNTGC 2 cut(s) 606, 640
BciT130I CCWGG 1 cut(s) 1215
BciVI GTATCC 1 cut(s) 1165
BcoDI GTCTC 3 cut(s) 41, 531, 902
BfaI CTAG 3 cut(s) 498, 645, 1244
BfmI CTRYAG 5 cut(s) 309, 355, 523, 609, 615
BfrI CTTAAG 1 cut(s) 400
BfuI GTATCC 1 cut(s) 1165
BglI GCCNNNNNGGC 1 cut(s) 1285
BlnI CCTAGG 1 cut(s) 644
BlpI GCTNAGC 1 cut(s) 1328
Bme1390I CCNGG 1 cut(s) 1215
BmgT120I GGNCC 2 cut(s) 229, 316
BmiI GGNNCC 2 cut(s) 944, 1008
BmrFI CCNGG 1 cut(s) 1215
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 1328
Bpu14I TTCGAA 2 cut(s) 279, 1258
BpuEI CTTGAG 2 cut(s) 946, 996
BsaAI YACGTR 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 80, 574, 644
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 7 cut(s) 252, 360, 448, 575, 843, 964, 1070
Bse1I ACTGG 1 cut(s) 1289
Bse3DI GCAATG 2 cut(s) 824, 1322
BseBI CCWGG 1 cut(s) 1215
BseDI CCNNGG 3 cut(s) 80, 574, 644
BseGI GGATG 1 cut(s) 1228
BseLI CCNNNNNNNGG 7 cut(s) 252, 360, 448, 575, 843, 964, 1070
BseMI GCAATG 2 cut(s) 824, 1322
BseMII CTCAG 4 cut(s) 29, 194, 462, 1109
BseNI ACTGG 1 cut(s) 1289
BseRI GAGGAG 2 cut(s) 37, 947
BseSI GKGCMC 1 cut(s) 1009
BseXI GCAGC 9 cut(s) 335, 364, 601, 623, 807, 940, 947, 1061, 1293
BseYI CCCAGC 1 cut(s) 701
BsgI GTGCAG 2 cut(s) 8, 881
BshFI GGCC 5 cut(s) 79, 231, 317, 452, 1145
BshNI GGYRCC 1 cut(s) 1006
BsiHKAI GWGCWC 1 cut(s) 682
BslFI GGGAC 2 cut(s) 169, 884
BslI CCNNNNNNNGG 7 cut(s) 252, 360, 448, 575, 843, 964, 1070
BsmAI GTCTC 3 cut(s) 41, 531, 902
BsmFI GGGAC 2 cut(s) 169, 884
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 5 cut(s) 79, 231, 317, 452, 1145
Bsp119I TTCGAA 2 cut(s) 279, 1258
Bsp1286I GDGCHC 2 cut(s) 682, 1009
Bsp143I GATC 5 cut(s) 298, 685, 952, 1186, 1262
Bsp1720I GCTNAGC 1 cut(s) 1328
Bsp19I CCATGG 1 cut(s) 80
BspACI CCGC 5 cut(s) 90, 207, 868, 1053, 1163
BspANI GGCC 5 cut(s) 79, 231, 317, 452, 1145
BspCNI CTCAG 4 cut(s) 28, 193, 463, 1108
BspLI GGNNCC 2 cut(s) 944, 1008
BspMAI CTGCAG 2 cut(s) 613, 619
BspPI GGATC 3 cut(s) 293, 960, 1194
BspQI GCTCTTC 1 cut(s) 169
BspT104I TTCGAA 2 cut(s) 279, 1258
BspT107I GGYRCC 1 cut(s) 1006
BspTI CTTAAG 1 cut(s) 400
BsrDI GCAATG 2 cut(s) 824, 1322
BsrI ACTGG 1 cut(s) 1289
BssECI CCNNGG 3 cut(s) 80, 574, 644
BssMI GATC 5 cut(s) 298, 685, 952, 1186, 1262
BssT1I CCWWGG 2 cut(s) 80, 644
Bst2UI CCWGG 1 cut(s) 1215
Bst4CI ACNGT 5 cut(s) 527, 640, 736, 877, 913
Bst6I CTCTTC 3 cut(s) 169, 486, 768
BstAFI CTTAAG 1 cut(s) 400
BstAPI GCANNNNNTGC 2 cut(s) 608, 1306
BstBAI YACGTR 1 cut(s) 392
BstBI TTCGAA 2 cut(s) 279, 1258
BstC8I GCNNGC 4 cut(s) 343, 926, 933, 1277
BstDEI CTNAG 5 cut(s) 15, 180, 471, 1095, 1328
BstDSI CCRYGG 2 cut(s) 80, 574
BstF5I GGATG 1 cut(s) 1228
BstHHI GCGC 2 cut(s) 831, 1242
BstKTI GATC 5 cut(s) 301, 688, 955, 1189, 1265
BstMAI GTCTC 3 cut(s) 41, 531, 902
BstMBI GATC 5 cut(s) 298, 685, 952, 1186, 1262
BstMWI GCNNNNNNNGC 8 cut(s) 11, 17, 323, 608, 826, 1013, 1285, 1306
BstNI CCWGG 1 cut(s) 1215
BstNSI RCATGY 2 cut(s) 928, 1279
BstSCI CCNGG 1 cut(s) 1213
BstSFI CTRYAG 5 cut(s) 309, 355, 523, 609, 615
BstSLI GKGCMC 1 cut(s) 1009
BstSNI TACGTA 1 cut(s) 392
BstV1I GCAGC 9 cut(s) 335, 364, 601, 623, 807, 940, 947, 1061, 1293
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 2 cut(s) 298, 952
BstYI RGATCY 2 cut(s) 298, 952
BsuI GTATCC 1 cut(s) 1165
BsuRI GGCC 5 cut(s) 79, 231, 317, 452, 1145
BtgI CCRYGG 2 cut(s) 80, 574
BtsCI GGATG 1 cut(s) 1228
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 3 cut(s) 38, 636, 873
Cac8I GCNNGC 4 cut(s) 343, 926, 933, 1277
CaiI CAGNNNCTG 2 cut(s) 22, 1306
CfoI GCGC 2 cut(s) 831, 1242
Cfr13I GGNCC 2 cut(s) 229, 316
Csp6I GTAC 2 cut(s) 393, 641
CviAII CATG 3 cut(s) 81, 925, 1276
CviQI GTAC 2 cut(s) 393, 641
DdeI CTNAG 5 cut(s) 15, 180, 471, 1095, 1328
DpnI GATC 5 cut(s) 300, 687, 954, 1188, 1264
DpnII GATC 5 cut(s) 298, 685, 952, 1186, 1262
Eam1104I CTCTTC 3 cut(s) 169, 486, 768
EarI CTCTTC 3 cut(s) 169, 486, 768
Eco105I TACGTA 1 cut(s) 392
Eco130I CCWWGG 2 cut(s) 80, 644
Eco57I CTGAAG 2 cut(s) 210, 1221
EcoRII CCWGG 1 cut(s) 1213
EcoT14I CCWWGG 2 cut(s) 80, 644
ErhI CCWWGG 2 cut(s) 80, 644
FaeI CATG 3 cut(s) 84, 928, 1279
FalI AAGNNNNNCTT 2 cut(s) 1311, 1343
FaqI GGGAC 2 cut(s) 169, 884
FatI CATG 3 cut(s) 80, 924, 1275
FauI CCCGC 2 cut(s) 97, 861
FblI GTMKAC 2 cut(s) 388, 1227
FokI GGATG 1 cut(s) 1235
FspBI CTAG 3 cut(s) 498, 645, 1244
GlaI GCGC 2 cut(s) 830, 1241
GsaI CCCAGC 1 cut(s) 705
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 5 cut(s) 79, 231, 317, 452, 1145
HhaI GCGC 2 cut(s) 831, 1242
Hin1II CATG 3 cut(s) 84, 928, 1279
Hin6I GCGC 2 cut(s) 829, 1240
HinP1I GCGC 2 cut(s) 829, 1240
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 5 cut(s) 212, 588, 621, 1137, 1206
HphI GGTGA 3 cut(s) 683, 1007, 1229
Hpy166II GTNNAC 4 cut(s) 124, 223, 389, 1228
Hpy188I TCNGA 2 cut(s) 947, 1201
Hpy188III TCNNGA 3 cut(s) 625, 683, 1084
Hpy8I GTNNAC 4 cut(s) 124, 223, 389, 1228
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 7 cut(s) 359, 363, 763, 898, 1050, 1074, 1196
HpyCH4III ACNGT 5 cut(s) 527, 640, 736, 877, 913
HpyCH4IV ACGT 2 cut(s) 391, 629
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 17, 323, 608, 826, 1013, 1285, 1306
HpyF3I CTNAG 5 cut(s) 15, 180, 471, 1095, 1328
HpySE526I ACGT 2 cut(s) 391, 629
Hsp92II CATG 3 cut(s) 84, 928, 1279
HspAI GCGC 2 cut(s) 829, 1240
Kzo9I GATC 5 cut(s) 298, 685, 952, 1186, 1262
LguI GCTCTTC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 685, 1303
Lsp1109I GCAGC 9 cut(s) 335, 364, 601, 623, 807, 940, 947, 1061, 1293
LweI GCATC 1 cut(s) 253
MaeI CTAG 3 cut(s) 498, 645, 1244
MaeII ACGT 2 cut(s) 391, 629
MaeIII GTNAC 2 cut(s) 347, 1207
MalI GATC 5 cut(s) 300, 687, 954, 1188, 1264
MboI GATC 5 cut(s) 298, 685, 952, 1186, 1262
MflI RGATCY 2 cut(s) 298, 952
MhlI GDGCHC 2 cut(s) 682, 1009
MluCI AATT 8 cut(s) 292, 304, 419, 429, 482, 1118, 1131, 1293
MlyI GAGTC 2 cut(s) 221, 1215
MmeI TCCRAC 2 cut(s) 703, 1157
MseI TTAA 5 cut(s) 258, 291, 401, 717, 1121
MspA1I CMGCKG 1 cut(s) 614
MspCI CTTAAG 1 cut(s) 400
MspR9I CCNGG 1 cut(s) 1215
Mva1269I GAATGC 1 cut(s) 602
MvaI CCWGG 1 cut(s) 1215
MwoI GCNNNNNNNGC 8 cut(s) 11, 17, 323, 608, 826, 1013, 1285, 1306
NcoI CCATGG 1 cut(s) 80
NdeII GATC 5 cut(s) 298, 685, 952, 1186, 1262
NlaIII CATG 3 cut(s) 84, 928, 1279
NlaIV GGNNCC 2 cut(s) 944, 1008
NmeAIII GCCGAG 2 cut(s) 235, 1171
NmuCI GTSAC 2 cut(s) 347, 1207
NspI RCATGY 2 cut(s) 928, 1279
NspV TTCGAA 2 cut(s) 279, 1258
PaeI GCATGC 2 cut(s) 928, 1279
PciSI GCTCTTC 1 cut(s) 169
PctI GAATGC 1 cut(s) 602
PfeI GAWTC 3 cut(s) 588, 621, 1137
PflMI CCANNNNNTGG 1 cut(s) 575
PleI GAGTC 2 cut(s) 220, 1214
PpsI GAGTC 2 cut(s) 220, 1214
Ppu21I YACGTR 1 cut(s) 392
PshBI ATTAAT 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 1213
PspFI CCCAGC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 1213
PspN4I GGNNCC 2 cut(s) 944, 1008
PspPI GGNCC 2 cut(s) 229, 316
PstI CTGCAG 2 cut(s) 613, 619
PstNI CAGNNNCTG 2 cut(s) 22, 1306
PsuI RGATCY 2 cut(s) 298, 952
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 2 cut(s) 394, 642
RsaNI GTAC 2 cut(s) 393, 641
SapI GCTCTTC 1 cut(s) 169
SaqAI TTAA 5 cut(s) 258, 291, 401, 717, 1121
Sau3AI GATC 5 cut(s) 298, 685, 952, 1186, 1262
Sau96I GGNCC 2 cut(s) 229, 316
SchI GAGTC 2 cut(s) 221, 1215
ScrFI CCNGG 1 cut(s) 1215
SduI GDGCHC 2 cut(s) 682, 1009
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 5 cut(s) 309, 355, 523, 609, 615
SfuI TTCGAA 2 cut(s) 279, 1258
SmlI CTYRAG 3 cut(s) 400, 961, 1011
SmoI CTYRAG 3 cut(s) 400, 961, 1011
SnaBI TACGTA 1 cut(s) 392
SphI GCATGC 2 cut(s) 928, 1279
Sse9I AATT 8 cut(s) 292, 304, 419, 429, 482, 1118, 1131, 1293
SsiI CCGC 5 cut(s) 90, 207, 868, 1053, 1163
SspMI CTAG 3 cut(s) 498, 645, 1244
StyD4I CCNGG 1 cut(s) 1213
StyI CCWWGG 2 cut(s) 80, 644
TaaI ACNGT 5 cut(s) 527, 640, 736, 877, 913
TaiI ACGT 2 cut(s) 394, 632
TaqI TCGA 6 cut(s) 279, 460, 626, 1083, 1135, 1258
TasI AATT 8 cut(s) 292, 304, 419, 429, 482, 1118, 1131, 1293
TauI GCSGC 1 cut(s) 1055
TfiI GAWTC 3 cut(s) 588, 621, 1137
Tru1I TTAA 5 cut(s) 258, 291, 401, 717, 1121
Tru9I TTAA 5 cut(s) 258, 291, 401, 717, 1121
TscAI CASTG 3 cut(s) 38, 643, 880
TseFI GTSAC 2 cut(s) 347, 1207
Tsp45I GTSAC 2 cut(s) 347, 1207
TspDTI ATGAA 1 cut(s) 819
TspGWI ACGGA 3 cut(s) 563, 644, 965
TspRI CASTG 3 cut(s) 38, 643, 880
Van91I CCANNNNNTGG 1 cut(s) 575
Vha464I CTTAAG 1 cut(s) 400
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 3 cut(s) 419, 1131, 1293
XceI RCATGY 2 cut(s) 928, 1279
XmaJI CCTAGG 1 cut(s) 644
XmiI GTMKAC 2 cut(s) 388, 1227
XspI CTAG 3 cut(s) 498, 645, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.