pycom11g26620

Protein LOW PSII ACCUMULATION 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
29127540 .. 29130753
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g26620.6

Sequence Viewer

Length: 1332 bp
ATGGCTGTGGCTGCTCCGACTCTGCACCGCCAATGGCTCCGCTTGTCGAACCCAATAACACGAAAAAGGCCGTCGCTTCCCGGCGGAGCAACCACCACGCTTAATCATTTGCAAATCAACAAGAACTCAGCCGCCATCTCTCTCATCTCTTGCTCTTCAACTTCTCAGTCCACTGAAGCCAATACAGAAACCCCCGAGTCTTGTGTGAATTTGGGTCTCCAGCTCTTCTCCAAAGGAAGGGTTAAAGATGCCTTAATTCAGTTTGAAAAAGCACTCAGTTTGGACCCCAACACGATCGAGGCCCAGGCTGCGCTGTATAACAAGGCCTGTTGCCACGCCTACAAAGGGGAAGGAAGGAAAGCTGCTGATTGTCTACGTACTGCCTTGAGAGAATATGACCTCAAATTTGGCACAATATTGAATGATCCCGACTTGGCCTCTTTCAGAGCTTTGCCCGAATTTAAGGAATTGCAAGAAGAGGCTAGACTAGGTGGGGAAGATATAGGCTACGGTTTTAGGAGAGATCTCAAGCTCATTAGTGAAGTCCAAGCACCATTCCGTGGGATTAGGAGATTCTTTTATGTAGCTTTCTCTGCAGCTGCAGGAATCTCAACGTTCTTTACTGTACCGAGGCTGTTCCGTGCAATTGCAGGTGGTGATGGTGCTCCTGATCTCGGGGAAACTGCCGGCAATGTTGCCATTAATATTGGAGGTCTTATTGTTCTTGTGGCATTGTTTTTATGGGAAAACAAGAAGGAGGAGGAACAACTTTCACAAATATCTCGTGATGAAAATCTATCGAGATTGCCATTGCGCCTCTCCACCAACCGTGTTGTTGAGCTTGTGCAGTTGCGAGACACTGTCAGGCCTGTTATTTTAGCAGGGAAGAAGGAGACTGTGGCCTTAAGTATCCAGCAGGCAGCAAAATTTCGAACTGAGCTCCTAAGAAGAGGTGTTCTTCTAGTTCCTGTCATCTGGGATGAAGTTAGGGCACCTGAAATAGAGAAGAAAGGATTCGGTTCACCTTCAAAGGCAGCTGCTGCTCTTCCTTCTATCGGGGAGGATTTCGAGAAACGAACTCAGTCTATAACTGCAAAGTCAAAGTTAAAAGCTGAAATCCGATTCAAGGCTGAGGTTGTTTCCCCTGGAGAATGGGAAAGGTGGATAAAGGATCAGCAAAAGTCCGAAGGAGTTACTCCTGGTGAGGATGTCTACATTATACTGCGCCTAGATGGTAGGGTTCGAAGATCAGGGAAGGGCATGCCTGACTGGCAACAAATTGTGCAGGAGCTGCCGCCTATAGAAGCATTACTTAGTAAACTAGAAAGATAG

Protein Analysis

444

Amino Acids

49.05

Weight (kDa)

9.22

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011276)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
Acc36I ACCTGC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 991
AccB7I CCANNNNNTGG 1 cut(s) 560
AccI GTMKAC 2 cut(s) 373, 1212
AciI CCGC 5 cut(s) 28, 40, 84, 132, 1295
AclI AACGTT 1 cut(s) 614
AclWI GGATC 2 cut(s) 419, 1179
AcsI RAATTY 4 cut(s) 208, 404, 458, 926
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 2 cut(s) 379, 627
AfiI CCNNNNNNNGG 6 cut(s) 237, 345, 560, 674, 1055, 1126
AflII CTTAAG 1 cut(s) 904
AgsI TTSAA 5 cut(s) 159, 266, 421, 1029, 1126
AjnI CCWGG 3 cut(s) 303, 1144, 1198
Alw21I GWGCWC 2 cut(s) 667, 942
Alw26I GTCTC 3 cut(s) 221, 849, 887
AlwI GGATC 2 cut(s) 419, 1179
AlwNI CAGNNNCTG 2 cut(s) 1040, 1291
Ama87I CYCGRG 2 cut(s) 194, 674
AoxI GGCC 6 cut(s) 68, 300, 324, 435, 866, 900
ApoI RAATTY 4 cut(s) 208, 404, 458, 926
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AseI ATTAAT 1 cut(s) 702
Asp700I GAANNNNTTC 1 cut(s) 1013
AspLEI GCGC 3 cut(s) 313, 816, 1227
AspS9I GGNCC 2 cut(s) 283, 301
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 668, 1014, 1214
AsuII TTCGAA 2 cut(s) 931, 1243
AvaI CYCGRG 2 cut(s) 194, 674
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 994
BanI GGYRCC 1 cut(s) 991
BanII GRGCYC 1 cut(s) 942
BauI CACGAG 1 cut(s) 783
Bbv12I GWGCWC 2 cut(s) 667, 942
BbvCI CCTCAGC 1 cut(s) 1131
BbvI GCAGC 9 cut(s) 295, 349, 586, 608, 932, 1024, 1027, 1046, 1278
BccI CCATC 3 cut(s) 143, 653, 1226
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 3 cut(s) 305, 1146, 1200
BciVI GTATCC 1 cut(s) 920
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 221, 849, 887
BfaI CTAG 5 cut(s) 483, 488, 962, 1229, 1322
BfmI CTRYAG 3 cut(s) 594, 600, 1299
BfrI CTTAAG 1 cut(s) 904
BfuAI ACCTGC 1 cut(s) 641
BfuI GTATCC 1 cut(s) 920
BglI GCCNNNNNGGC 1 cut(s) 1270
BglII AGATCT 1 cut(s) 523
Bme1390I CCNGG 4 cut(s) 81, 305, 1146, 1200
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 2 cut(s) 194, 674
BmgT120I GGNCC 2 cut(s) 283, 301
BmiI GGNNCC 3 cut(s) 38, 285, 993
BmrFI CCNGG 4 cut(s) 81, 305, 1146, 1200
BmsI GCATC 1 cut(s) 238
BpmI CTGGAG 2 cut(s) 203, 1167
Bpu10I CCTNAGC 1 cut(s) 1131
Bpu14I TTCGAA 2 cut(s) 931, 1243
BpuEI CTTGAG 2 cut(s) 406, 512
BpuMI CCSGG 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 792
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 303, 559, 629, 1144
Bsc4I CCNNNNNNNGG 6 cut(s) 237, 345, 560, 674, 1055, 1126
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 1 cut(s) 1274
Bse3DI GCAATG 2 cut(s) 697, 809
Bse8I GATNNNNATC 1 cut(s) 792
BseBI CCWGG 3 cut(s) 305, 1146, 1200
BseDI CCNNGG 4 cut(s) 303, 559, 629, 1144
BseGI GGATG 2 cut(s) 985, 1213
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 6 cut(s) 237, 345, 560, 674, 1055, 1126
BseMI GCAATG 2 cut(s) 697, 809
BseMII CTCAG 6 cut(s) 141, 179, 289, 927, 1094, 1122
BseNI ACTGG 1 cut(s) 1274
BseRI GAGGAG 1 cut(s) 773
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 9 cut(s) 295, 349, 586, 608, 932, 1024, 1027, 1046, 1278
BsgI GTGCAG 3 cut(s) 8, 866, 1304
Bsh1285I CGRYCG 1 cut(s) 297
BshFI GGCC 6 cut(s) 70, 302, 326, 437, 868, 902
BshNI GGYRCC 1 cut(s) 991
BsiEI CGRYCG 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 667, 942
BsiHKCI CYCGRG 2 cut(s) 194, 674
BsiSI CCGG 2 cut(s) 81, 687
BslI CCNNNNNNNGG 6 cut(s) 237, 345, 560, 674, 1055, 1126
BsmAI GTCTC 3 cut(s) 221, 849, 887
BsnI GGCC 6 cut(s) 70, 302, 326, 437, 868, 902
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 2 cut(s) 194, 674
Bsp119I TTCGAA 2 cut(s) 931, 1243
Bsp1286I GDGCHC 3 cut(s) 667, 942, 994
Bsp143I GATC 6 cut(s) 294, 424, 523, 670, 1171, 1247
BspACI CCGC 5 cut(s) 28, 40, 84, 132, 1295
BspANI GGCC 6 cut(s) 70, 302, 326, 437, 868, 902
BspCNI CTCAG 6 cut(s) 140, 178, 288, 928, 1093, 1123
BspLI GGNNCC 3 cut(s) 38, 285, 993
BspMAI CTGCAG 2 cut(s) 598, 604
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 2 cut(s) 419, 1179
BspQI GCTCTTC 3 cut(s) 160, 230, 1050
BspT104I TTCGAA 2 cut(s) 931, 1243
BspT107I GGYRCC 1 cut(s) 991
BspTI CTTAAG 1 cut(s) 904
BspTNI GGTCTC 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 697, 809
BsrFI RCCGGY 1 cut(s) 686
BsrI ACTGG 1 cut(s) 1274
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 4 cut(s) 303, 559, 629, 1144
BssMI GATC 6 cut(s) 294, 424, 523, 670, 1171, 1247
BssSI CACGAG 1 cut(s) 783
Bst2BI CACGAG 1 cut(s) 783
Bst2UI CCWGG 3 cut(s) 305, 1146, 1200
Bst4CI ACNGT 5 cut(s) 512, 625, 830, 862, 898
Bst6I CTCTTC 5 cut(s) 160, 230, 471, 943, 1050
BstAFI CTTAAG 1 cut(s) 904
BstAPI GCANNNNNTGC 2 cut(s) 1040, 1291
BstBAI YACGTR 1 cut(s) 377
BstBI TTCGAA 2 cut(s) 931, 1243
BstC8I GCNNGC 3 cut(s) 688, 918, 1262
BstDEI CTNAG 8 cut(s) 127, 165, 275, 936, 944, 1080, 1131, 1313
BstDSI CCRYGG 1 cut(s) 559
BstF5I GGATG 2 cut(s) 985, 1213
BstHHI GCGC 3 cut(s) 313, 816, 1227
BstKTI GATC 6 cut(s) 297, 427, 526, 673, 1174, 1250
BstMAI GTCTC 3 cut(s) 221, 849, 887
BstMBI GATC 6 cut(s) 294, 424, 523, 670, 1171, 1247
BstMCI CGRYCG 1 cut(s) 297
BstMWI GCNNNNNNNGC 6 cut(s) 11, 308, 593, 1040, 1270, 1291
BstNI CCWGG 3 cut(s) 305, 1146, 1200
BstNSI RCATGY 1 cut(s) 1264
BstSCI CCNGG 4 cut(s) 79, 303, 1144, 1198
BstSFI CTRYAG 3 cut(s) 594, 600, 1299
BstSLI GKGCMC 1 cut(s) 994
BstSNI TACGTA 1 cut(s) 377
BstV1I GCAGC 9 cut(s) 295, 349, 586, 608, 932, 1024, 1027, 1046, 1278
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 6 cut(s) 70, 302, 326, 437, 868, 902
BtgI CCRYGG 1 cut(s) 559
BtsCI GGATG 2 cut(s) 985, 1213
BtsIMutI CAGTG 2 cut(s) 171, 858
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 3 cut(s) 688, 918, 1262
CaiI CAGNNNCTG 2 cut(s) 1040, 1291
CfoI GCGC 3 cut(s) 313, 816, 1227
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 2 cut(s) 283, 301
Csp6I GTAC 2 cut(s) 378, 626
CviAII CATG 1 cut(s) 1261
CviQI GTAC 2 cut(s) 378, 626
DdeI CTNAG 8 cut(s) 127, 165, 275, 936, 944, 1080, 1131, 1313
DpnI GATC 6 cut(s) 296, 426, 525, 672, 1173, 1249
DpnII GATC 6 cut(s) 294, 424, 523, 670, 1171, 1247
Eam1104I CTCTTC 5 cut(s) 160, 230, 471, 943, 1050
EarI CTCTTC 5 cut(s) 160, 230, 471, 943, 1050
EciI GGCGGA 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 940
Eco105I TACGTA 1 cut(s) 377
Eco147I AGGCCT 2 cut(s) 326, 868
Eco24I GRGCYC 1 cut(s) 942
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 940
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 2 cut(s) 194, 674
EcoICRI GAGCTC 1 cut(s) 940
EcoRII CCWGG 3 cut(s) 303, 1144, 1198
EcoT38I GRGCYC 1 cut(s) 942
FaeI CATG 1 cut(s) 1264
FaiI YATR 9 cut(s) 318, 396, 503, 582, 742, 1088, 1220, 1262, 1301
FalI AAGNNNNNCTT 2 cut(s) 1296, 1328
FatI CATG 1 cut(s) 1260
FblI GTMKAC 2 cut(s) 373, 1212
FokI GGATG 2 cut(s) 992, 1220
FriOI GRGCYC 1 cut(s) 942
FspBI CTAG 5 cut(s) 483, 488, 962, 1229, 1322
GlaI GCGC 3 cut(s) 312, 815, 1226
GsuI CTGGAG 2 cut(s) 203, 1167
HaeIII GGCC 6 cut(s) 70, 302, 326, 437, 868, 902
HapII CCGG 2 cut(s) 81, 687
HhaI GCGC 3 cut(s) 313, 816, 1227
Hin1II CATG 1 cut(s) 1264
Hin6I GCGC 3 cut(s) 311, 814, 1225
HinP1I GCGC 3 cut(s) 311, 814, 1225
HinfI GANTC 6 cut(s) 19, 197, 573, 606, 1014, 1122
HpaII CCGG 2 cut(s) 81, 687
HphI GGTGA 3 cut(s) 668, 1014, 1214
Hpy166II GTNNAC 5 cut(s) 171, 374, 1022, 1213, 1319
Hpy188I TCNGA 4 cut(s) 18, 446, 1121, 1186
Hpy188III TCNNGA 5 cut(s) 428, 668, 785, 801, 1069
Hpy8I GTNNAC 5 cut(s) 171, 374, 1022, 1213, 1319
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 9 cut(s) 231, 344, 348, 748, 883, 1035, 1059, 1181, 1249
HpyCH4III ACNGT 5 cut(s) 512, 625, 830, 862, 898
HpyCH4IV ACGT 2 cut(s) 376, 614
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 308, 593, 1040, 1270, 1291
HpyF3I CTNAG 8 cut(s) 127, 165, 275, 936, 944, 1080, 1131, 1313
HpySE526I ACGT 2 cut(s) 376, 614
Hsp92II CATG 1 cut(s) 1264
HspAI GCGC 3 cut(s) 311, 814, 1225
KroI GCCGGC 1 cut(s) 686
KroNI GCCGGC 1 cut(s) 688
Kzo9I GATC 6 cut(s) 294, 424, 523, 670, 1171, 1247
LguI GCTCTTC 3 cut(s) 160, 230, 1050
LmnI GCTCC 6 cut(s) 19, 42, 86, 670, 945, 1288
Lsp1109I GCAGC 9 cut(s) 295, 349, 586, 608, 932, 1024, 1027, 1046, 1278
LweI GCATC 1 cut(s) 238
MaeI CTAG 5 cut(s) 483, 488, 962, 1229, 1322
MaeII ACGT 2 cut(s) 376, 614
MaeIII GTNAC 1 cut(s) 1192
MalI GATC 6 cut(s) 296, 426, 525, 672, 1173, 1249
MboI GATC 6 cut(s) 294, 424, 523, 670, 1171, 1247
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 3 cut(s) 667, 942, 994
MluCI AATT 8 cut(s) 208, 255, 404, 458, 467, 645, 926, 1278
MlyI GAGTC 2 cut(s) 13, 206
MmeI TCCRAC 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 1013
MseI TTAA 7 cut(s) 102, 243, 254, 462, 702, 905, 1106
MspA1I CMGCKG 2 cut(s) 599, 1037
MspCI CTTAAG 1 cut(s) 904
MspI CCGG 2 cut(s) 81, 687
MspR9I CCNGG 4 cut(s) 81, 305, 1146, 1200
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 3 cut(s) 305, 1146, 1200
MwoI GCNNNNNNNGC 6 cut(s) 11, 308, 593, 1040, 1270, 1291
NaeI GCCGGC 1 cut(s) 688
NciI CCSGG 1 cut(s) 81
NdeII GATC 6 cut(s) 294, 424, 523, 670, 1171, 1247
NgoMIV GCCGGC 1 cut(s) 686
NlaIII CATG 1 cut(s) 1264
NlaIV GGNNCC 3 cut(s) 38, 285, 993
NspI RCATGY 1 cut(s) 1264
NspV TTCGAA 2 cut(s) 931, 1243
PaeI GCATGC 1 cut(s) 1264
PaqCI CACCTGC 1 cut(s) 641
PceI AGGCCT 2 cut(s) 326, 868
PciSI GCTCTTC 3 cut(s) 160, 230, 1050
PdiI GCCGGC 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 1013
PfeI GAWTC 4 cut(s) 573, 606, 1014, 1122
PflFI GACNNNGTC 1 cut(s) 860
PflMI CCANNNNNTGG 1 cut(s) 560
Ple19I CGATCG 1 cut(s) 297
PleI GAGTC 2 cut(s) 13, 205
PpsI GAGTC 2 cut(s) 13, 205
Ppu21I YACGTR 1 cut(s) 377
PshBI ATTAAT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 942
Psp1406I AACGTT 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 303, 1144, 1198
PspGI CCWGG 3 cut(s) 303, 1144, 1198
PspN4I GGNNCC 3 cut(s) 38, 285, 993
PspPI GGNCC 2 cut(s) 283, 301
PstI CTGCAG 2 cut(s) 598, 604
PstNI CAGNNNCTG 2 cut(s) 1040, 1291
PsuI RGATCY 1 cut(s) 523
PsyI GACNNNGTC 1 cut(s) 860
PvuI CGATCG 1 cut(s) 297
PvuII CAGCTG 2 cut(s) 599, 1037
RsaI GTAC 2 cut(s) 379, 627
RsaNI GTAC 2 cut(s) 378, 626
SacI GAGCTC 1 cut(s) 942
SapI GCTCTTC 3 cut(s) 160, 230, 1050
SaqAI TTAA 7 cut(s) 102, 243, 254, 462, 702, 905, 1106
Sau3AI GATC 6 cut(s) 294, 424, 523, 670, 1171, 1247
Sau96I GGNCC 2 cut(s) 283, 301
SchI GAGTC 2 cut(s) 13, 206
ScrFI CCNGG 4 cut(s) 81, 305, 1146, 1200
SduI GDGCHC 3 cut(s) 667, 942, 994
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 3 cut(s) 594, 600, 1299
SfuI TTCGAA 2 cut(s) 931, 1243
SinI GGWCC 1 cut(s) 283
SmlI CTYRAG 3 cut(s) 385, 527, 904
SmoI CTYRAG 3 cut(s) 385, 527, 904
SnaBI TACGTA 1 cut(s) 377
SphI GCATGC 1 cut(s) 1264
Sse9I AATT 8 cut(s) 208, 255, 404, 458, 467, 645, 926, 1278
SseBI AGGCCT 2 cut(s) 326, 868
SsiI CCGC 5 cut(s) 28, 40, 84, 132, 1295
SspI AATATT 2 cut(s) 417, 706
SspMI CTAG 5 cut(s) 483, 488, 962, 1229, 1322
SstI GAGCTC 1 cut(s) 942
StuI AGGCCT 2 cut(s) 326, 868
StyD4I CCNGG 4 cut(s) 79, 303, 1144, 1198
TaaI ACNGT 5 cut(s) 512, 625, 830, 862, 898
TaiI ACGT 2 cut(s) 379, 617
TaqI TCGA 6 cut(s) 47, 297, 800, 931, 1068, 1243
TasI AATT 8 cut(s) 208, 255, 404, 458, 467, 645, 926, 1278
TauI GCSGC 2 cut(s) 134, 1297
TfiI GAWTC 4 cut(s) 573, 606, 1014, 1122
Tru1I TTAA 7 cut(s) 102, 243, 254, 462, 702, 905, 1106
Tru9I TTAA 7 cut(s) 102, 243, 254, 462, 702, 905, 1106
TscAI CASTG 2 cut(s) 178, 865
TspDTI ATGAA 2 cut(s) 804, 996
TspGWI ACGGA 2 cut(s) 548, 629
TspRI CASTG 2 cut(s) 178, 865
Tth111I GACNNNGTC 1 cut(s) 860
Van91I CCANNNNNTGG 1 cut(s) 560
Vha464I CTTAAG 1 cut(s) 904
VpaK11BI GGWCC 1 cut(s) 283
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 4 cut(s) 208, 404, 458, 926
XceI RCATGY 1 cut(s) 1264
XmiI GTMKAC 2 cut(s) 373, 1212
XmnI GAANNNNTTC 1 cut(s) 1013
XspI CTAG 5 cut(s) 483, 488, 962, 1229, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.