Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011276

Physical Location & Seq

Genomic Coordinates Forward (+)

21932617 .. 21936030

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G257900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCTGTGGCTGCTCTGGCTCTGCACCAGCAATGGCTCTCCTTCTCGAACCCAATAACAAGAATAAGGCCGTGGCTTCCCGGCAGAACAACCACCCTTACCCATTTGCAAATCCATAAGAACTTGGCCGGTATCTCTCTCATTTCGTGCTCTTCTTCTTCAACTTCTCAGTCCACTGATGCCAATGCAGAGACCGCCGAGTCTTGTGTCAATTTGGGTCTCCAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAGTTCAGTTTGAAACAGCACTCAGTTTAGATCCCAACCCAATTGAAGCCCAAGCTGCGCTGTATAATAAAGCCTGCTGTCACGCCTATAAAGGGGAAGGAAGGAAAGCTGCTGATTGTCTACGTACTGCCTTGAGAGAATATAACCTCAAATTCGGCACAATTTTGAATGATCCTGACTTGGCCTCTTTTAGAGCTTTGCCTGAATTTAAGGAATTGCAGGAAGAGGCTAGACTAGGTGGGGAAGATATAGGCTACAGTTTTAGGAGAGATCTCAAACTCATTAGTGAAGTCCAAGCACCATTCCGTGGAATTAGGAGATTCTTCTATGTGGCGTTCTCGGCAGCTGCAGGAATCTCAACGTTCTTTACTGTACCCAGGCTGTTCCGTGCAATTTCAGGTGGTGATGATGCTCCTGATGTCTGGGAAACTGCTGGCAATGTCGCTATTAACATTGGAGGTCTTATTGTTCTTGTGGCGTTATTTTTATGGGAAAACAAGAAGGAGGAGGAACAACTTACTCAAATATCTCGTGATGAAAATCTATCGAGGTTGCCGTTGCGCCTCTCCACCAATAGGATTGTTGAACTTGTGCAGTTGCGAGACACTGTTAGGCCTGTTATTTTAGCAGGGAAGAAGGAGACTGTTTCCGTAAGTATCCAGCAGGCAGCGAGGTTTCGAACCGAGCTCCTAAGAAGGGGTGTTCTTTTAGTTCCTGTCATCTGGGATGAAGTTAGGGCACCTCAAATAGAGAAGAAGGGCTTCGGTGCACCTTCAAAGGCAGCTGCGGCTCTTCCTTCCATTGGGGAAGAATTCGAGAAACGAACTCAATCTATAACTGCGAAGTCAAAGTTAAAAGCTGAAATTCGGTTCAAGGCTGAGGTTGTATCCCCTTCAGAATGGGAAAGGTGGATAAGGGATCAGCAAAAGTCTGAAGGAGTTACTCCTGGTGAGGATGTCTATATTATACTGCGCCTAGATGGTCGGGTTCGAAGGTCAGGCAAAGGCATGCCTGACTGGCAACAAATTGTCAAGGAGCTGCCACCAATAGAAGCATTGCTTAGCAAACTAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0010270 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3493 TPR_1 TPR_2

Protein Analysis

445

Amino Acids

49.49

Weight (kDa)

9.17

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02910 AT1G02910
fragaria_vesca	FvH4_2g25340 FvH4_2g25340 FvH4_2g25340 FvH4_2g25340
malus_domestica	MD03G1284800.v1.1 MD11G1304300.v1.1
prunus_persica	Prupe.8G257900_v2.0.a1
pyrus_communis	pycom11g26620
rosa_chinensis	RchiOBHm_Chr6g0293521
rosa_laevigata	RLG00000011944
rosa_multiflora	Rmu_sc0006269.1_g000009
rosa_roxburghii	Rroxscaffold_7G00174120
rosa_rugosa	Rorug06G0236000 Rorug06G0236100.1
rosa_samantha	Rh6AG348800 Rh6CG362900 Rh6DG349800
rosa_wichuraiana	Rw6G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	994
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	376
AciI	CCGC	2 cut(s)	195, 1043
AclI	AACGTT	1 cut(s)	617
AclWI	GGATC	3 cut(s)	281, 422, 1182
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	4 cut(s)	407, 461, 1067, 1119
AcuI	CTGAAG	2 cut(s)	1134, 1209
AfaI	GTAC	2 cut(s)	382, 630
AfiI	CCNNNNNNNGG	6 cut(s)	240, 348, 563, 831, 952, 1058
AgsI	TTSAA	7 cut(s)	162, 269, 302, 424, 842, 1032, 1129
AjnI	CCWGG	2 cut(s)	632, 1201
AluBI	AGCT	9 cut(s)	226, 311, 365, 452, 602, 943, 1040, 1115, 1294
AluI	AGCT	9 cut(s)	226, 311, 365, 452, 602, 943, 1040, 1115, 1294
Alw21I	GWGCWC	3 cut(s)	152, 945, 1027
Alw26I	GTCTC	4 cut(s)	185, 224, 852, 890
Alw44I	GTGCAC	1 cut(s)	1023
AlwI	GGATC	3 cut(s)	281, 422, 1182
AoxI	GGCC	4 cut(s)	68, 126, 438, 869
ApaLI	GTGCAC	1 cut(s)	1023
ApeKI	GCWGC	9 cut(s)	11, 311, 365, 599, 602, 923, 1037, 1040, 1294
ApoI	RAATTY	4 cut(s)	407, 461, 1067, 1119
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	3 cut(s)	316, 819, 1230
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	671, 1217
AsuII	TTCGAA	2 cut(s)	934, 1246
BaeGI	GKGCMC	2 cut(s)	997, 1027
BanI	GGYRCC	1 cut(s)	994
BanII	GRGCYC	1 cut(s)	945
BauI	CACGAG	1 cut(s)	786
Bbv12I	GWGCWC	3 cut(s)	152, 945, 1027
BbvCI	CCTCAGC	1 cut(s)	1134
BbvI	GCAGC	8 cut(s)	298, 352, 589, 611, 935, 1027, 1049, 1281
BccI	CCATC	1 cut(s)	1229
BceAI	ACGGC	2 cut(s)	55, 796
BciT130I	CCWGG	2 cut(s)	634, 1203
BciVI	GTATCC	2 cut(s)	923, 1153
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	4 cut(s)	185, 224, 852, 890
BfaI	CTAG	4 cut(s)	486, 491, 1232, 1325
BfmI	CTRYAG	2 cut(s)	511, 603
BfuI	GTATCC	2 cut(s)	923, 1153
BglI	GCCNNNNNGGC	1 cut(s)	1273
BglII	AGATCT	1 cut(s)	526
BlpI	GCTNAGC	1 cut(s)	1316
Bme1390I	CCNGG	3 cut(s)	81, 634, 1203
BmiI	GGNNCC	1 cut(s)	996
BmrFI	CCNGG	3 cut(s)	81, 634, 1203
BmsI	GCATC	3 cut(s)	169, 241, 655
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	1134
Bpu1102I	GCTNAGC	1 cut(s)	1316
Bpu14I	TTCGAA	2 cut(s)	934, 1246
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	795
BsaI	GGTCTC	2 cut(s)	185, 224
BsaJI	CCNNGG	3 cut(s)	71, 562, 632
Bsc4I	CCNNNNNNNGG	6 cut(s)	240, 348, 563, 831, 952, 1058
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	1277
Bse3DI	GCAATG	3 cut(s)	38, 700, 1310
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	2 cut(s)	634, 1203
BseDI	CCNNGG	3 cut(s)	71, 562, 632
BseGI	GGATG	2 cut(s)	988, 1216
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	6 cut(s)	240, 348, 563, 831, 952, 1058
BseMI	GCAATG	3 cut(s)	38, 700, 1310
BseMII	CTCAG	3 cut(s)	182, 292, 1125
BseNI	ACTGG	1 cut(s)	1277
BseRI	GAGGAG	1 cut(s)	776
BseSI	GKGCMC	2 cut(s)	997, 1027
BseXI	GCAGC	8 cut(s)	298, 352, 589, 611, 935, 1027, 1049, 1281
BsgI	GTGCAG	2 cut(s)	8, 869
BshFI	GGCC	4 cut(s)	70, 128, 440, 871
BshNI	GGYRCC	1 cut(s)	994
BsiHKAI	GWGCWC	3 cut(s)	152, 945, 1027
BsiSI	CCGG	2 cut(s)	81, 129
BslI	CCNNNNNNNGG	6 cut(s)	240, 348, 563, 831, 952, 1058
BsmAI	GTCTC	4 cut(s)	185, 224, 852, 890
BsnI	GGCC	4 cut(s)	70, 128, 440, 871
Bso31I	GGTCTC	2 cut(s)	185, 224
Bsp119I	TTCGAA	2 cut(s)	934, 1246
Bsp1286I	GDGCHC	4 cut(s)	152, 945, 997, 1027
Bsp143I	GATC	4 cut(s)	286, 427, 526, 1174
Bsp1720I	GCTNAGC	1 cut(s)	1316
BspACI	CCGC	2 cut(s)	195, 1043
BspANI	GGCC	4 cut(s)	70, 128, 440, 871
BspCNI	CTCAG	3 cut(s)	181, 291, 1126
BspLI	GGNNCC	1 cut(s)	996
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	3 cut(s)	281, 422, 1182
BspQI	GCTCTTC	3 cut(s)	157, 233, 1053
BspT104I	TTCGAA	2 cut(s)	934, 1246
BspT107I	GGYRCC	1 cut(s)	994
BspTNI	GGTCTC	2 cut(s)	185, 224
BsrDI	GCAATG	3 cut(s)	38, 700, 1310
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	1277
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	71, 562, 632
BssMI	GATC	4 cut(s)	286, 427, 526, 1174
BssSI	CACGAG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	2 cut(s)	634, 1203
Bst4CI	ACNGT	4 cut(s)	515, 628, 865, 901
Bst6I	CTCTTC	4 cut(s)	157, 233, 474, 1053
BstBAI	YACGTR	1 cut(s)	380
BstBI	TTCGAA	2 cut(s)	934, 1246
BstC8I	GCNNGC	4 cut(s)	331, 691, 921, 1265
BstDEI	CTNAG	5 cut(s)	168, 278, 947, 1134, 1316
BstDSI	CCRYGG	2 cut(s)	71, 562
BstF5I	GGATG	2 cut(s)	988, 1216
BstHHI	GCGC	3 cut(s)	316, 819, 1230
BstKTI	GATC	4 cut(s)	289, 430, 529, 1177
BstMAI	GTCTC	4 cut(s)	185, 224, 852, 890
BstMBI	GATC	4 cut(s)	286, 427, 526, 1174
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 17, 194, 311, 596, 1043, 1273
BstNI	CCWGG	2 cut(s)	634, 1203
BstNSI	RCATGY	1 cut(s)	1267
BstSCI	CCNGG	3 cut(s)	79, 632, 1201
BstSFI	CTRYAG	2 cut(s)	511, 603
BstSLI	GKGCMC	2 cut(s)	997, 1027
BstSNI	TACGTA	1 cut(s)	380
BstV1I	GCAGC	8 cut(s)	298, 352, 589, 611, 935, 1027, 1049, 1281
BstX2I	RGATCY	2 cut(s)	286, 526
BstYI	RGATCY	2 cut(s)	286, 526
BsuI	GTATCC	2 cut(s)	923, 1153
BsuRI	GGCC	4 cut(s)	70, 128, 440, 871
BtgI	CCRYGG	2 cut(s)	71, 562
BtsCI	GGATG	2 cut(s)	988, 1216
BtsIMutI	CAGTG	2 cut(s)	174, 861
Cac8I	GCNNGC	4 cut(s)	331, 691, 921, 1265
CfoI	GCGC	3 cut(s)	316, 819, 1230
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	381, 629
CviAII	CATG	1 cut(s)	1264
CviQI	GTAC	2 cut(s)	381, 629
DdeI	CTNAG	5 cut(s)	168, 278, 947, 1134, 1316
DpnI	GATC	4 cut(s)	288, 429, 528, 1176
DpnII	GATC	4 cut(s)	286, 427, 526, 1174
DrdI	GACNNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	4 cut(s)	157, 233, 474, 1053
EarI	CTCTTC	4 cut(s)	157, 233, 474, 1053
Ecl136II	GAGCTC	1 cut(s)	943
Eco105I	TACGTA	1 cut(s)	380
Eco147I	AGGCCT	1 cut(s)	871
Eco24I	GRGCYC	1 cut(s)	945
Eco31I	GGTCTC	2 cut(s)	185, 224
Eco53kI	GAGCTC	1 cut(s)	943
Eco57I	CTGAAG	2 cut(s)	1134, 1209
EcoICRI	GAGCTC	1 cut(s)	943
EcoRI	GAATTC	1 cut(s)	1067
EcoRII	CCWGG	2 cut(s)	632, 1201
EcoT38I	GRGCYC	1 cut(s)	945
FaeI	CATG	1 cut(s)	1267
FalI	AAGNNNNNCTT	4 cut(s)	1001, 1033, 1299, 1331
FatI	CATG	1 cut(s)	1263
FblI	GTMKAC	1 cut(s)	376
FokI	GGATG	2 cut(s)	995, 1223
FriOI	GRGCYC	1 cut(s)	945
FspBI	CTAG	4 cut(s)	486, 491, 1232, 1325
GlaI	GCGC	3 cut(s)	315, 818, 1229
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	4 cut(s)	70, 128, 440, 871
HapII	CCGG	2 cut(s)	81, 129
HhaI	GCGC	3 cut(s)	316, 819, 1230
Hin1II	CATG	1 cut(s)	1267
Hin6I	GCGC	3 cut(s)	314, 817, 1228
HinP1I	GCGC	3 cut(s)	314, 817, 1228
HinfI	GANTC	3 cut(s)	200, 576, 609
HpaII	CCGG	2 cut(s)	81, 129
HphI	GGTGA	2 cut(s)	671, 1217
Hpy166II	GTNNAC	3 cut(s)	174, 377, 1025
Hpy188I	TCNGA	2 cut(s)	1153, 1189
Hpy188III	TCNNGA	5 cut(s)	46, 431, 671, 788, 1072
Hpy8I	GTNNAC	3 cut(s)	174, 377, 1025
HpyCH4III	ACNGT	4 cut(s)	515, 628, 865, 901
HpyCH4IV	ACGT	2 cut(s)	379, 617
HpyCH4V	TGCA	8 cut(s)	25, 109, 188, 475, 605, 647, 850, 1025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 17, 194, 311, 596, 1043, 1273
HpyF3I	CTNAG	5 cut(s)	168, 278, 947, 1134, 1316
HpySE526I	ACGT	2 cut(s)	379, 617
Hsp92II	CATG	1 cut(s)	1267
HspAI	GCGC	3 cut(s)	314, 817, 1228
Kzo9I	GATC	4 cut(s)	286, 427, 526, 1174
LguI	GCTCTTC	3 cut(s)	157, 233, 1053
LmnI	GCTCC	3 cut(s)	673, 948, 1291
Lsp1109I	GCAGC	8 cut(s)	298, 352, 589, 611, 935, 1027, 1049, 1281
LweI	GCATC	3 cut(s)	169, 241, 655
MaeI	CTAG	4 cut(s)	486, 491, 1232, 1325
MaeII	ACGT	2 cut(s)	379, 617
MaeIII	GTNAC	2 cut(s)	335, 1195
MalI	GATC	4 cut(s)	288, 429, 528, 1176
MboI	GATC	4 cut(s)	286, 427, 526, 1174
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	2 cut(s)	286, 526
MhlI	GDGCHC	4 cut(s)	152, 945, 997, 1027
MlyI	GAGTC	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	1016
MseI	TTAA	4 cut(s)	246, 465, 705, 1109
MspA1I	CMGCKG	2 cut(s)	602, 1040
MspI	CCGG	2 cut(s)	81, 129
MspR9I	CCNGG	3 cut(s)	81, 634, 1203
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	634, 1203
MwoI	GCNNNNNNNGC	7 cut(s)	11, 17, 194, 311, 596, 1043, 1273
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	4 cut(s)	286, 427, 526, 1174
NlaIII	CATG	1 cut(s)	1267
NlaIV	GGNNCC	1 cut(s)	996
NmeAIII	GCCGAG	2 cut(s)	223, 575
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	1267
NspV	TTCGAA	2 cut(s)	934, 1246
PaeI	GCATGC	1 cut(s)	1267
PceI	AGGCCT	1 cut(s)	871
PciSI	GCTCTTC	3 cut(s)	157, 233, 1053
PcsI	WCGNNNNNNNCGW	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	1016
PfeI	GAWTC	2 cut(s)	576, 609
PflMI	CCANNNNNTGG	1 cut(s)	563
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	945
Psp1406I	AACGTT	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	632, 1201
PspGI	CCWGG	2 cut(s)	632, 1201
PspN4I	GGNNCC	1 cut(s)	996
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	286, 526
PvuII	CAGCTG	2 cut(s)	602, 1040
RsaI	GTAC	2 cut(s)	382, 630
RsaNI	GTAC	2 cut(s)	381, 629
SacI	GAGCTC	1 cut(s)	945
SapI	GCTCTTC	3 cut(s)	157, 233, 1053
SaqAI	TTAA	4 cut(s)	246, 465, 705, 1109
Sau3AI	GATC	4 cut(s)	286, 427, 526, 1174
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	81, 634, 1203
SduI	GDGCHC	4 cut(s)	152, 945, 997, 1027
SfaNI	GCATC	3 cut(s)	169, 241, 655
SfcI	CTRYAG	2 cut(s)	511, 603
SfuI	TTCGAA	2 cut(s)	934, 1246
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SnaBI	TACGTA	1 cut(s)	380
SphI	GCATGC	1 cut(s)	1267
SseBI	AGGCCT	1 cut(s)	871
SsiI	CCGC	2 cut(s)	195, 1043
SspMI	CTAG	4 cut(s)	486, 491, 1232, 1325
SstI	GAGCTC	1 cut(s)	945
StuI	AGGCCT	1 cut(s)	871
StyD4I	CCNGG	3 cut(s)	79, 632, 1201
TaaI	ACNGT	4 cut(s)	515, 628, 865, 901
TaiI	ACGT	2 cut(s)	382, 620
TaqI	TCGA	5 cut(s)	47, 803, 934, 1071, 1246
TauI	GCSGC	1 cut(s)	1046
TfiI	GAWTC	2 cut(s)	576, 609
Tru1I	TTAA	4 cut(s)	246, 465, 705, 1109
Tru9I	TTAA	4 cut(s)	246, 465, 705, 1109
TscAI	CASTG	2 cut(s)	181, 868
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	9 cut(s)	11, 311, 365, 599, 602, 923, 1037, 1040, 1294
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	807, 999
TspGWI	ACGGA	3 cut(s)	551, 632, 895
TspRI	CASTG	2 cut(s)	181, 868
Van91I	CCANNNNNTGG	1 cut(s)	563
VneI	GTGCAC	1 cut(s)	1023
XapI	RAATTY	4 cut(s)	407, 461, 1067, 1119
XceI	RCATGY	1 cut(s)	1267
XmiI	GTMKAC	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	1016
XspI	CTAG	4 cut(s)	486, 491, 1232, 1325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.