RchiOBHm_Chr6g0293521

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011276
Physical Location & Seq
Forward (+)
56190434 .. 56193785
3352 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26337

Sequence Viewer

Length: 1335 bp
ATGGCTATGGCTGCTCAGGCTCTGCACCAGCAGTGTCTCTGCTTCTCCTCAAACCCAATAACAACGTCAACAACAAGGCCATGGCTTCCCGCCAGAACCACCTTTTTCCAAGTCCACAAGAAACTTGCCCATCACATCTCGCTCATTCCTTGCTCTTCTTCAACTTCTCAGTCCCCTGAAGCCAATACAGAAACCGCCGAGTCCTGTGTCAACTTGGGCCTCCAGCTTTTCTCCAAAGGACGGGTTAAAGATGCTTTAGTCCAGTTCGAAACGGCACTTAATTTAGATCCCAATCCTATAGAGGCCCAAGCAGCTCTCTATAATAAAGCTTGCTGTCACGCCTACAGAGGGGAAGGAAGGAAAGCTGCGGATTGTCTACGTACTTGCTTAAGAGAATATAACCTCAAATTTGGCACAATTTTGAATGACCCTGACTTGGCCTCTTTTCGAGCTTTGCCTGAGTATAAGGAATTGCAAGAAGAGGCTAGAATAGGTGGAGAAGACATAGGCTACAGTTTTAGGAGAGACTTGAAACTTATTAGTGAAGTCCAAGCACCATTCCGTGGGGTTAGGAGATTCCTTTATGTGGCATTCTCTGCAGCTGCAGGAATCTCGACGTTCTTCACTGTACCTAGGCTATTCCGTGCATTTGCAGGTGGTGATGGTGCTCCTGATCTCTTGGAAACTGCTGGGAATGTTGCTATTAATGTCGGAGGTTTTACAGTTCTTGTGGCATTGTTTTTATGGGAAAACAAGAAGGAAGAGGAACAACTTGCACAAATATCTCGTAATGAAAGTCTGTCAAGGCTGCCATTGCGCCTCTCCACCAATAGGGTTGTTGAACTTGTGCAGTTGCGGGACACTGTTAGACCTGTCATTTTAGCAGGGAAGAAGGAGACTGTTTCTTCAAGCATGCAGCAGGCAGCGAGGTTCCGAACGGATCTCCTCTCAAGAGGTGTTCTTTTAGTTCCTGTTATCTGGGGTGAAGTTAGGGCACCTCAAACAGAGAAGAAAGGCTTTGGCACACCTTCAAAGGCAGCCGCCGCTCTGCCTTCTATTGGGGAAGATTTCGAGAAACGAACTCAGTCTATAACAGCGAAGTCGAAATTAAAAGCTGAAATTCGATTCAAGGCCGAGATTGTATCCCCTGAGGAATGGGAAAGTTGGATAAGGGAGCAGCAGAAGTCTGAAGGAGTCACTCCTGGTGAGGATGTCTACATTATACTGCGCCTAGATGGTCGGGTTCGAAGATCAGGCAAAGGCATGCCTGACTGGCAACAAATTTTGCAGGAGCTGCCTCCAGTAGAAGCATTGCTTAGCAAACTTGAAAGATAG

Protein Analysis

444

Amino Acids

49.37

Weight (kDa)

8.92

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 174 - 251 8.2e-24 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02910 AT1G02910
fragaria_vesca FvH4_2g25340 FvH4_2g25340 FvH4_2g25340 FvH4_2g25340
malus_domestica MD03G1284800.v1.1 MD11G1304300.v1.1
prunus_persica Prupe.8G257900_v2.0.a1
pyrus_communis pycom11g26620
rosa_chinensis RchiOBHm_Chr6g0293521
rosa_laevigata RLG00000011944
rosa_multiflora Rmu_sc0006269.1_g000009
rosa_roxburghii Rroxscaffold_7G00174120
rosa_rugosa Rorug06G0236000 Rorug06G0236100.1
rosa_samantha Rh6AG348800 Rh6CG362900 Rh6DG349800
rosa_wichuraiana Rw6G030350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 994
AccB7I CCANNNNNTGG 1 cut(s) 563
AccBSI CCGCTC 1 cut(s) 1046
AccI GTMKAC 2 cut(s) 376, 1215
AciI CCGC 6 cut(s) 90, 195, 368, 856, 1041, 1044
AclWI GGATC 2 cut(s) 281, 948
AcsI RAATTY 3 cut(s) 407, 1119, 1281
AcuI CTGAAG 2 cut(s) 198, 1209
AfaI GTAC 2 cut(s) 382, 630
AfiI CCNNNNNNNGG 7 cut(s) 240, 348, 436, 563, 586, 831, 1058
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 8 cut(s) 162, 424, 532, 842, 909, 1032, 1129, 1328
AjnI CCWGG 1 cut(s) 1201
AluBI AGCT 8 cut(s) 226, 314, 329, 365, 452, 602, 1115, 1294
AluI AGCT 8 cut(s) 226, 314, 329, 365, 452, 602, 1115, 1294
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 3 cut(s) 41, 519, 890
AlwI GGATC 2 cut(s) 281, 948
AlwNI CAGNNNCTG 2 cut(s) 22, 1294
AoxI GGCC 5 cut(s) 77, 217, 303, 438, 1131
ApoI RAATTY 3 cut(s) 407, 1119, 1281
AseI ATTAAT 1 cut(s) 705
AspA2I CCTAGG 1 cut(s) 632
AspLEI GCGC 2 cut(s) 819, 1230
AspS9I GGNCC 2 cut(s) 217, 304
AsuHPI GGTGA 3 cut(s) 671, 995, 1217
AsuII TTCGAA 2 cut(s) 267, 1246
AvrII CCTAGG 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 1149
BaeGI GKGCMC 1 cut(s) 997
BanI GGYRCC 1 cut(s) 994
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 670
BccI CCATC 3 cut(s) 138, 656, 1229
BceAI ACGGC 1 cut(s) 288
BcgI CGANNNNNNTGC 2 cut(s) 594, 628
BciT130I CCWGG 1 cut(s) 1203
BciVI GTATCC 1 cut(s) 1153
BcoDI GTCTC 3 cut(s) 41, 519, 890
BfaI CTAG 3 cut(s) 486, 633, 1232
BfmI CTRYAG 5 cut(s) 297, 343, 511, 597, 603
BfrI CTTAAG 1 cut(s) 388
BfuAI ACCTGC 1 cut(s) 644
BfuI GTATCC 1 cut(s) 1153
BglI GCCNNNNNGGC 1 cut(s) 1273
BlnI CCTAGG 1 cut(s) 632
BlpI GCTNAGC 1 cut(s) 1316
Bme1390I CCNGG 1 cut(s) 1203
BmgT120I GGNCC 2 cut(s) 217, 304
BmiI GGNNCC 2 cut(s) 932, 996
BmrFI CCNGG 1 cut(s) 1203
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 507
BpmI CTGGAG 2 cut(s) 206, 1284
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 1316
Bpu14I TTCGAA 2 cut(s) 267, 1246
BpuEI CTTGAG 1 cut(s) 934
BsaAI YACGTR 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 80, 562, 632
Bsc4I CCNNNNNNNGG 7 cut(s) 240, 348, 436, 563, 586, 831, 1058
Bse1I ACTGG 3 cut(s) 262, 1277, 1301
Bse21I CCTNAGG 1 cut(s) 1149
Bse3DI GCAATG 2 cut(s) 812, 1310
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 1203
BseDI CCNNGG 3 cut(s) 80, 562, 632
BseGI GGATG 1 cut(s) 1216
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 7 cut(s) 240, 348, 436, 563, 586, 831, 1058
BseMI GCAATG 2 cut(s) 812, 1310
BseMII CTCAG 5 cut(s) 29, 182, 450, 1097, 1140
BseNI ACTGG 3 cut(s) 262, 1277, 1301
BseRI GAGGAG 2 cut(s) 37, 935
BseSI GKGCMC 1 cut(s) 997
BseYI CCCAGC 1 cut(s) 689
BsgI GTGCAG 2 cut(s) 8, 869
BshFI GGCC 5 cut(s) 79, 219, 305, 440, 1133
BshNI GGYRCC 1 cut(s) 994
BsiHKAI GWGCWC 1 cut(s) 670
BslFI GGGAC 2 cut(s) 157, 872
BslI CCNNNNNNNGG 7 cut(s) 240, 348, 436, 563, 586, 831, 1058
BsmAI GTCTC 3 cut(s) 41, 519, 890
BsmFI GGGAC 2 cut(s) 157, 872
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 5 cut(s) 79, 219, 305, 440, 1133
Bsp119I TTCGAA 2 cut(s) 267, 1246
Bsp1286I GDGCHC 2 cut(s) 670, 997
Bsp143I GATC 4 cut(s) 286, 673, 940, 1250
Bsp1720I GCTNAGC 1 cut(s) 1316
Bsp19I CCATGG 1 cut(s) 80
BspACI CCGC 6 cut(s) 90, 195, 368, 856, 1041, 1044
BspANI GGCC 5 cut(s) 79, 219, 305, 440, 1133
BspCNI CTCAG 5 cut(s) 28, 181, 451, 1096, 1141
BspLI GGNNCC 2 cut(s) 932, 996
BspMAI CTGCAG 2 cut(s) 601, 607
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 2 cut(s) 281, 948
BspQI GCTCTTC 1 cut(s) 160
BspT104I TTCGAA 2 cut(s) 267, 1246
BspT107I GGYRCC 1 cut(s) 994
BspTI CTTAAG 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 1046
BsrDI GCAATG 2 cut(s) 812, 1310
BsrI ACTGG 3 cut(s) 262, 1277, 1301
BssECI CCNNGG 3 cut(s) 80, 562, 632
BssMI GATC 4 cut(s) 286, 673, 940, 1250
BssT1I CCWWGG 2 cut(s) 80, 632
Bst2UI CCWGG 1 cut(s) 1203
Bst4CI ACNGT 5 cut(s) 515, 628, 724, 865, 901
Bst6I CTCTTC 3 cut(s) 160, 474, 756
BstAFI CTTAAG 1 cut(s) 388
BstAPI GCANNNNNTGC 2 cut(s) 596, 1294
BstBAI YACGTR 1 cut(s) 380
BstBI TTCGAA 2 cut(s) 267, 1246
BstC8I GCNNGC 4 cut(s) 331, 914, 921, 1265
BstDEI CTNAG 6 cut(s) 15, 168, 459, 1083, 1149, 1316
BstDSI CCRYGG 2 cut(s) 80, 562
BstF5I GGATG 1 cut(s) 1216
BstHHI GCGC 2 cut(s) 819, 1230
BstKTI GATC 4 cut(s) 289, 676, 943, 1253
BstMAI GTCTC 3 cut(s) 41, 519, 890
BstMBI GATC 4 cut(s) 286, 673, 940, 1250
BstMWI GCNNNNNNNGC 8 cut(s) 11, 17, 311, 596, 814, 1043, 1273, 1294
BstNI CCWGG 1 cut(s) 1203
BstNSI RCATGY 2 cut(s) 916, 1267
BstSCI CCNGG 1 cut(s) 1201
BstSFI CTRYAG 5 cut(s) 297, 343, 511, 597, 603
BstSLI GKGCMC 1 cut(s) 997
BstSNI TACGTA 1 cut(s) 380
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 2 cut(s) 286, 940
BstYI RGATCY 2 cut(s) 286, 940
Bsu36I CCTNAGG 1 cut(s) 1149
BsuI GTATCC 1 cut(s) 1153
BsuRI GGCC 5 cut(s) 79, 219, 305, 440, 1133
BtgI CCRYGG 2 cut(s) 80, 562
BtsCI GGATG 1 cut(s) 1216
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 3 cut(s) 38, 624, 861
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 4 cut(s) 331, 914, 921, 1265
CaiI CAGNNNCTG 2 cut(s) 22, 1294
CfoI GCGC 2 cut(s) 819, 1230
Cfr13I GGNCC 2 cut(s) 217, 304
Csp6I GTAC 2 cut(s) 381, 629
CviAII CATG 3 cut(s) 81, 913, 1264
CviQI GTAC 2 cut(s) 381, 629
DdeI CTNAG 6 cut(s) 15, 168, 459, 1083, 1149, 1316
DpnI GATC 4 cut(s) 288, 675, 942, 1252
DpnII GATC 4 cut(s) 286, 673, 940, 1250
Eam1104I CTCTTC 3 cut(s) 160, 474, 756
EarI CTCTTC 3 cut(s) 160, 474, 756
Eco105I TACGTA 1 cut(s) 380
Eco130I CCWWGG 2 cut(s) 80, 632
Eco57I CTGAAG 2 cut(s) 198, 1209
Eco81I CCTNAGG 1 cut(s) 1149
EcoRII CCWGG 1 cut(s) 1201
EcoT14I CCWWGG 2 cut(s) 80, 632
ErhI CCWWGG 2 cut(s) 80, 632
FaeI CATG 3 cut(s) 84, 916, 1267
FalI AAGNNNNNCTT 4 cut(s) 1001, 1033, 1299, 1331
FaqI GGGAC 2 cut(s) 157, 872
FatI CATG 3 cut(s) 80, 912, 1263
FauI CCCGC 2 cut(s) 97, 849
FblI GTMKAC 2 cut(s) 376, 1215
FokI GGATG 1 cut(s) 1223
FspBI CTAG 3 cut(s) 486, 633, 1232
GlaI GCGC 2 cut(s) 818, 1229
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 2 cut(s) 206, 1284
HaeIII GGCC 5 cut(s) 79, 219, 305, 440, 1133
HhaI GCGC 2 cut(s) 819, 1230
Hin1II CATG 3 cut(s) 84, 916, 1267
Hin6I GCGC 2 cut(s) 817, 1228
HinP1I GCGC 2 cut(s) 817, 1228
HincII GTYRAC 2 cut(s) 69, 211
HindII GTYRAC 2 cut(s) 69, 211
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 5 cut(s) 200, 576, 609, 1125, 1194
HphI GGTGA 3 cut(s) 671, 995, 1217
Hpy166II GTNNAC 5 cut(s) 69, 115, 211, 377, 1216
Hpy188I TCNGA 3 cut(s) 713, 935, 1189
Hpy188III TCNNGA 4 cut(s) 613, 671, 951, 1072
Hpy8I GTNNAC 5 cut(s) 69, 115, 211, 377, 1216
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 7 cut(s) 347, 351, 751, 886, 1038, 1062, 1184
HpyCH4III ACNGT 5 cut(s) 515, 628, 724, 865, 901
HpyCH4IV ACGT 3 cut(s) 65, 379, 617
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 17, 311, 596, 814, 1043, 1273, 1294
HpyF3I CTNAG 6 cut(s) 15, 168, 459, 1083, 1149, 1316
HpySE526I ACGT 3 cut(s) 65, 379, 617
Hsp92II CATG 3 cut(s) 84, 916, 1267
HspAI GCGC 2 cut(s) 817, 1228
Kzo9I GATC 4 cut(s) 286, 673, 940, 1250
LguI GCTCTTC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 673, 1174, 1291
LweI GCATC 1 cut(s) 241
MaeI CTAG 3 cut(s) 486, 633, 1232
MaeII ACGT 3 cut(s) 65, 379, 617
MaeIII GTNAC 2 cut(s) 335, 1195
MalI GATC 4 cut(s) 288, 675, 942, 1252
MbiI CCGCTC 1 cut(s) 1046
MboI GATC 4 cut(s) 286, 673, 940, 1250
MflI RGATCY 2 cut(s) 286, 940
MhlI GDGCHC 2 cut(s) 670, 997
MluCI AATT 7 cut(s) 280, 407, 417, 470, 1106, 1119, 1281
MlyI GAGTC 2 cut(s) 209, 1203
MmeI TCCRAC 2 cut(s) 691, 1145
MseI TTAA 5 cut(s) 246, 279, 389, 705, 1109
MspA1I CMGCKG 1 cut(s) 602
MspCI CTTAAG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 1203
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 1 cut(s) 1203
MwoI GCNNNNNNNGC 8 cut(s) 11, 17, 311, 596, 814, 1043, 1273, 1294
NcoI CCATGG 1 cut(s) 80
NdeII GATC 4 cut(s) 286, 673, 940, 1250
NlaIII CATG 3 cut(s) 84, 916, 1267
NlaIV GGNNCC 2 cut(s) 932, 996
NmeAIII GCCGAG 2 cut(s) 223, 1159
NmuCI GTSAC 2 cut(s) 335, 1195
NspI RCATGY 2 cut(s) 916, 1267
NspV TTCGAA 2 cut(s) 267, 1246
PaeI GCATGC 2 cut(s) 916, 1267
PaqCI CACCTGC 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 160
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 3 cut(s) 576, 609, 1125
PflMI CCANNNNNTGG 1 cut(s) 563
PleI GAGTC 2 cut(s) 208, 1202
PpsI GAGTC 2 cut(s) 208, 1202
Ppu21I YACGTR 1 cut(s) 380
PshBI ATTAAT 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 1201
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 1201
PspN4I GGNNCC 2 cut(s) 932, 996
PspPI GGNCC 2 cut(s) 217, 304
PstI CTGCAG 2 cut(s) 601, 607
PstNI CAGNNNCTG 2 cut(s) 22, 1294
PsuI RGATCY 2 cut(s) 286, 940
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 2 cut(s) 382, 630
RsaNI GTAC 2 cut(s) 381, 629
SapI GCTCTTC 1 cut(s) 160
SaqAI TTAA 5 cut(s) 246, 279, 389, 705, 1109
Sau3AI GATC 4 cut(s) 286, 673, 940, 1250
Sau96I GGNCC 2 cut(s) 217, 304
SchI GAGTC 2 cut(s) 209, 1203
ScrFI CCNGG 1 cut(s) 1203
SduI GDGCHC 2 cut(s) 670, 997
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 5 cut(s) 297, 343, 511, 597, 603
SfuI TTCGAA 2 cut(s) 267, 1246
SmlI CTYRAG 2 cut(s) 388, 949
SmoI CTYRAG 2 cut(s) 388, 949
SnaBI TACGTA 1 cut(s) 380
SphI GCATGC 2 cut(s) 916, 1267
Sse9I AATT 7 cut(s) 280, 407, 417, 470, 1106, 1119, 1281
SsiI CCGC 6 cut(s) 90, 195, 368, 856, 1041, 1044
SspMI CTAG 3 cut(s) 486, 633, 1232
StyD4I CCNGG 1 cut(s) 1201
StyI CCWWGG 2 cut(s) 80, 632
TaaI ACNGT 5 cut(s) 515, 628, 724, 865, 901
TaiI ACGT 3 cut(s) 68, 382, 620
TaqI TCGA 7 cut(s) 267, 448, 614, 1071, 1103, 1123, 1246
TasI AATT 7 cut(s) 280, 407, 417, 470, 1106, 1119, 1281
TauI GCSGC 2 cut(s) 1043, 1046
TfiI GAWTC 3 cut(s) 576, 609, 1125
Tru1I TTAA 5 cut(s) 246, 279, 389, 705, 1109
Tru9I TTAA 5 cut(s) 246, 279, 389, 705, 1109
TscAI CASTG 3 cut(s) 38, 631, 868
TseFI GTSAC 2 cut(s) 335, 1195
Tsp45I GTSAC 2 cut(s) 335, 1195
TspDTI ATGAA 1 cut(s) 807
TspGWI ACGGA 3 cut(s) 551, 632, 953
TspRI CASTG 3 cut(s) 38, 631, 868
Van91I CCANNNNNTGG 1 cut(s) 563
Vha464I CTTAAG 1 cut(s) 388
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 3 cut(s) 407, 1119, 1281
XceI RCATGY 2 cut(s) 916, 1267
XmaJI CCTAGG 1 cut(s) 632
XmiI GTMKAC 2 cut(s) 376, 1215
XspI CTAG 3 cut(s) 486, 633, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.