Rh6AG348800

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011276
Physical Location & Seq
Forward (+)
54910271 .. 54913432
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG348800.1

Sequence Viewer

Length: 1329 bp
ATGGCTATGGCTGCTCAGGCTCTGCACCAGCAGTGTCTCTGCTTCTCCTCATCAACAACAAGGCCATGGCTTCCCGCCAGAACCACCACCCTTACCTTTTTCCAAGTCCACAAGAAACTTGCCCATCACATCTCGCTCATTCCTTGCTCTTCTTCAACTTCTCAGTCCCCTGAAGCCAATACAGAAACCGCCGAGTCCTGTGTCAACTTGGGCCTCCAGCTTTTCTCCAAAGGACGGGTTAAAGATGCTTTAGTCCAGTTCGAAACGGCACTTAATTTAGATCCCAATCCTGTAGAGGCCCAAGCAGCTCTCTATAATAAAGCTTGCTGTCACGCCTACAGAGGGGAAGGAAGGAAAGCTGCTGATTGTCTACGTACTTGCTTAAGAGAATATAACCTCAAATTTGGCACAATTTTGAATGACCCTGACTTGGCCTCTTTTCGAGCTTTGCCTGAGTATAAGGAATTGCAAGAAGAGGCTAGAATAGGTGGAGAAGACATAGGCTACAGTTTTAGGAGAGACTTGAAACTTATTAGTGAAGTCCAAGCACCATTCCGTGGGGTTAGGAGATTCTTTTATGTGGCATTCTCTGCAGCTGCTGGAATCTCAACGTTCTTCACTGTACCTAGGCTATTCCGTGCATTTGCAGGTGGTGATGGTGCTCCTGATCTCTTGGAAACTGCTGGGAATGTTGCTATTAATGTCGGAGGTTTTACAGTTCTTGTGGCATTGTTTTTATGGGAAAACAAGAAGGAAGAGGAACAACTTGCACAAATATCTCGTAATGAAAGTCTGTCAAGGCTGCCATTGCGCCTCTCCACCAATAGGGTTGTTGAACTTGTGCAGTTGCGGGACACTGTTAGACCTGTCATTTTAGCAGGGAAGAAGGAGACTGTTTCTTCAAGCATGCAGCAGGCAGCGAGGTTCCGAACGGATCTCCTCTCAAGAGGTGTTCTTTTAGTTCCTGTTATCTGGGGTGAAGTTAGGGCACCTCAAACAGAGAAGAAAGGCTTTGGCACACCTTCAAAGGCAGCCGCCGCTCTGCCTTCTATTGGGGAAGATTTCGAGAAACGAACTCAGTCTATAACTGCAAAGTCAAAATTAAAAGCTGAAATTCGATTCAAGGCTGAGATTGTATCCCCTGAGGAATGGGAAAGTTGGATAAGGGAGCAGCAGAAGTCTGAAGGAGTCACTCCTGGTGAGGATGTCTATATTATACTGCGCCTAGATGGTCGGGTTCGAAGATCAGGCAAAGGCATGCCTGACTGGCAACAAATTTTGCAGGAGCTGCCTCCAGTAGAAGCATTGCTTAGCAAACTTGAAAGATAG

Protein Analysis

442

Amino Acids

49.18

Weight (kDa)

8.92

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 172 - 249 4.3e-24 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02910 AT1G02910
fragaria_vesca FvH4_2g25340 FvH4_2g25340 FvH4_2g25340 FvH4_2g25340
malus_domestica MD03G1284800.v1.1 MD11G1304300.v1.1
prunus_persica Prupe.8G257900_v2.0.a1
pyrus_communis pycom11g26620
rosa_chinensis RchiOBHm_Chr6g0293521
rosa_laevigata RLG00000011944
rosa_multiflora Rmu_sc0006269.1_g000009
rosa_roxburghii Rroxscaffold_7G00174120
rosa_rugosa Rorug06G0236000 Rorug06G0236100.1
rosa_samantha Rh6AG348800 Rh6CG362900 Rh6DG349800
rosa_wichuraiana Rw6G030350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 638
Acc36I ACCTGC 1 cut(s) 638
AccB1I GGYRCC 1 cut(s) 988
AccB7I CCANNNNNTGG 1 cut(s) 557
AccBSI CCGCTC 1 cut(s) 1040
AccI GTMKAC 1 cut(s) 370
AciI CCGC 5 cut(s) 75, 189, 850, 1035, 1038
AclI AACGTT 1 cut(s) 611
AclWI GGATC 2 cut(s) 275, 942
AcsI RAATTY 3 cut(s) 401, 1113, 1275
AcuI CTGAAG 2 cut(s) 192, 1203
AfaI GTAC 2 cut(s) 376, 624
AfiI CCNNNNNNNGG 6 cut(s) 234, 342, 430, 557, 825, 1052
AflII CTTAAG 1 cut(s) 382
AgsI TTSAA 8 cut(s) 156, 418, 526, 836, 903, 1026, 1123, 1322
AjnI CCWGG 1 cut(s) 1195
AluBI AGCT 8 cut(s) 220, 308, 323, 359, 446, 596, 1109, 1288
AluI AGCT 8 cut(s) 220, 308, 323, 359, 446, 596, 1109, 1288
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 3 cut(s) 41, 513, 884
AlwI GGATC 2 cut(s) 275, 942
AlwNI CAGNNNCTG 3 cut(s) 22, 599, 1288
AoxI GGCC 4 cut(s) 62, 211, 297, 432
ApoI RAATTY 3 cut(s) 401, 1113, 1275
AseI ATTAAT 1 cut(s) 699
AspA2I CCTAGG 1 cut(s) 626
AspLEI GCGC 2 cut(s) 813, 1224
AspS9I GGNCC 2 cut(s) 211, 298
AsuHPI GGTGA 3 cut(s) 665, 989, 1211
AsuII TTCGAA 2 cut(s) 261, 1240
AvrII CCTAGG 1 cut(s) 626
AxyI CCTNAGG 1 cut(s) 1143
BaeGI GKGCMC 1 cut(s) 991
BanI GGYRCC 1 cut(s) 988
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 664
BccI CCATC 3 cut(s) 132, 650, 1223
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 1197
BciVI GTATCC 1 cut(s) 1147
BcoDI GTCTC 3 cut(s) 41, 513, 884
BfaI CTAG 3 cut(s) 480, 627, 1226
BfmI CTRYAG 4 cut(s) 291, 337, 505, 591
BfrI CTTAAG 1 cut(s) 382
BfuAI ACCTGC 1 cut(s) 638
BfuI GTATCC 1 cut(s) 1147
BglI GCCNNNNNGGC 1 cut(s) 1267
BlnI CCTAGG 1 cut(s) 626
BlpI GCTNAGC 1 cut(s) 1310
Bme1390I CCNGG 1 cut(s) 1197
BmgT120I GGNCC 2 cut(s) 211, 298
BmiI GGNNCC 2 cut(s) 926, 990
BmrFI CCNGG 1 cut(s) 1197
BmsI GCATC 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 2 cut(s) 200, 1278
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 1310
Bpu14I TTCGAA 2 cut(s) 261, 1240
BpuEI CTTGAG 1 cut(s) 928
BsaAI YACGTR 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 3 cut(s) 65, 556, 626
Bsc4I CCNNNNNNNGG 6 cut(s) 234, 342, 430, 557, 825, 1052
Bse1I ACTGG 3 cut(s) 256, 1271, 1295
Bse21I CCTNAGG 1 cut(s) 1143
Bse3DI GCAATG 2 cut(s) 806, 1304
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 1 cut(s) 1197
BseDI CCNNGG 3 cut(s) 65, 556, 626
BseGI GGATG 1 cut(s) 1210
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 6 cut(s) 234, 342, 430, 557, 825, 1052
BseMI GCAATG 2 cut(s) 806, 1304
BseMII CTCAG 6 cut(s) 29, 176, 444, 1091, 1119, 1134
BseNI ACTGG 3 cut(s) 256, 1271, 1295
BseRI GAGGAG 2 cut(s) 37, 929
BseSI GKGCMC 1 cut(s) 991
BseYI CCCAGC 1 cut(s) 683
BsgI GTGCAG 2 cut(s) 8, 863
BshFI GGCC 4 cut(s) 64, 213, 299, 434
BshNI GGYRCC 1 cut(s) 988
BsiHKAI GWGCWC 1 cut(s) 664
BslFI GGGAC 2 cut(s) 151, 866
BslI CCNNNNNNNGG 6 cut(s) 234, 342, 430, 557, 825, 1052
BsmAI GTCTC 3 cut(s) 41, 513, 884
BsmFI GGGAC 2 cut(s) 151, 866
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 4 cut(s) 64, 213, 299, 434
Bsp119I TTCGAA 2 cut(s) 261, 1240
Bsp1286I GDGCHC 2 cut(s) 664, 991
Bsp143I GATC 4 cut(s) 280, 667, 934, 1244
Bsp1720I GCTNAGC 1 cut(s) 1310
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 5 cut(s) 75, 189, 850, 1035, 1038
BspANI GGCC 4 cut(s) 64, 213, 299, 434
BspCNI CTCAG 6 cut(s) 28, 175, 445, 1090, 1120, 1135
BspLI GGNNCC 2 cut(s) 926, 990
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 638
BspPI GGATC 2 cut(s) 275, 942
BspQI GCTCTTC 1 cut(s) 154
BspT104I TTCGAA 2 cut(s) 261, 1240
BspT107I GGYRCC 1 cut(s) 988
BspTI CTTAAG 1 cut(s) 382
BsrBI CCGCTC 1 cut(s) 1040
BsrDI GCAATG 2 cut(s) 806, 1304
BsrI ACTGG 3 cut(s) 256, 1271, 1295
BssECI CCNNGG 3 cut(s) 65, 556, 626
BssMI GATC 4 cut(s) 280, 667, 934, 1244
BssT1I CCWWGG 2 cut(s) 65, 626
Bst2UI CCWGG 1 cut(s) 1197
Bst4CI ACNGT 5 cut(s) 509, 622, 718, 859, 895
Bst6I CTCTTC 3 cut(s) 154, 468, 750
BstAFI CTTAAG 1 cut(s) 382
BstAPI GCANNNNNTGC 2 cut(s) 590, 1288
BstBAI YACGTR 1 cut(s) 374
BstBI TTCGAA 2 cut(s) 261, 1240
BstC8I GCNNGC 4 cut(s) 325, 908, 915, 1259
BstDEI CTNAG 7 cut(s) 15, 162, 453, 1077, 1128, 1143, 1310
BstDSI CCRYGG 2 cut(s) 65, 556
BstF5I GGATG 1 cut(s) 1210
BstHHI GCGC 2 cut(s) 813, 1224
BstKTI GATC 4 cut(s) 283, 670, 937, 1247
BstMAI GTCTC 3 cut(s) 41, 513, 884
BstMBI GATC 4 cut(s) 280, 667, 934, 1244
BstMWI GCNNNNNNNGC 8 cut(s) 11, 17, 305, 590, 808, 1037, 1267, 1288
BstNI CCWGG 1 cut(s) 1197
BstNSI RCATGY 2 cut(s) 910, 1261
BstSCI CCNGG 1 cut(s) 1195
BstSFI CTRYAG 4 cut(s) 291, 337, 505, 591
BstSLI GKGCMC 1 cut(s) 991
BstSNI TACGTA 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 2 cut(s) 280, 934
BstYI RGATCY 2 cut(s) 280, 934
Bsu36I CCTNAGG 1 cut(s) 1143
BsuI GTATCC 1 cut(s) 1147
BsuRI GGCC 4 cut(s) 64, 213, 299, 434
BtgI CCRYGG 2 cut(s) 65, 556
BtsCI GGATG 1 cut(s) 1210
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 3 cut(s) 38, 618, 855
BveI ACCTGC 1 cut(s) 638
Cac8I GCNNGC 4 cut(s) 325, 908, 915, 1259
CaiI CAGNNNCTG 3 cut(s) 22, 599, 1288
CfoI GCGC 2 cut(s) 813, 1224
Cfr13I GGNCC 2 cut(s) 211, 298
Csp6I GTAC 2 cut(s) 375, 623
CviAII CATG 3 cut(s) 66, 907, 1258
CviQI GTAC 2 cut(s) 375, 623
DdeI CTNAG 7 cut(s) 15, 162, 453, 1077, 1128, 1143, 1310
DpnI GATC 4 cut(s) 282, 669, 936, 1246
DpnII GATC 4 cut(s) 280, 667, 934, 1244
Eam1104I CTCTTC 3 cut(s) 154, 468, 750
EarI CTCTTC 3 cut(s) 154, 468, 750
Eco105I TACGTA 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 65, 626
Eco57I CTGAAG 2 cut(s) 192, 1203
Eco81I CCTNAGG 1 cut(s) 1143
EcoRII CCWGG 1 cut(s) 1195
EcoT14I CCWWGG 2 cut(s) 65, 626
ErhI CCWWGG 2 cut(s) 65, 626
FaeI CATG 3 cut(s) 69, 910, 1261
FalI AAGNNNNNCTT 4 cut(s) 995, 1027, 1293, 1325
FaqI GGGAC 2 cut(s) 151, 866
FatI CATG 3 cut(s) 65, 906, 1257
FauI CCCGC 2 cut(s) 82, 843
FblI GTMKAC 1 cut(s) 370
FokI GGATG 1 cut(s) 1217
FspBI CTAG 3 cut(s) 480, 627, 1226
GlaI GCGC 2 cut(s) 812, 1223
GsaI CCCAGC 1 cut(s) 687
GsuI CTGGAG 2 cut(s) 200, 1278
HaeIII GGCC 4 cut(s) 64, 213, 299, 434
HhaI GCGC 2 cut(s) 813, 1224
Hin1II CATG 3 cut(s) 69, 910, 1261
Hin6I GCGC 2 cut(s) 811, 1222
HinP1I GCGC 2 cut(s) 811, 1222
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 5 cut(s) 194, 570, 603, 1119, 1188
HphI GGTGA 3 cut(s) 665, 989, 1211
Hpy166II GTNNAC 3 cut(s) 109, 205, 371
Hpy188I TCNGA 3 cut(s) 707, 929, 1183
Hpy188III TCNNGA 3 cut(s) 665, 945, 1066
Hpy8I GTNNAC 3 cut(s) 109, 205, 371
HpyAV CCTTC 7 cut(s) 341, 345, 745, 880, 1032, 1056, 1178
HpyCH4III ACNGT 5 cut(s) 509, 622, 718, 859, 895
HpyCH4IV ACGT 2 cut(s) 373, 611
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 17, 305, 590, 808, 1037, 1267, 1288
HpyF3I CTNAG 7 cut(s) 15, 162, 453, 1077, 1128, 1143, 1310
HpySE526I ACGT 2 cut(s) 373, 611
Hsp92II CATG 3 cut(s) 69, 910, 1261
HspAI GCGC 2 cut(s) 811, 1222
Kzo9I GATC 4 cut(s) 280, 667, 934, 1244
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 3 cut(s) 667, 1168, 1285
LweI GCATC 1 cut(s) 235
MaeI CTAG 3 cut(s) 480, 627, 1226
MaeII ACGT 2 cut(s) 373, 611
MaeIII GTNAC 2 cut(s) 329, 1189
MalI GATC 4 cut(s) 282, 669, 936, 1246
MbiI CCGCTC 1 cut(s) 1040
MboI GATC 4 cut(s) 280, 667, 934, 1244
MflI RGATCY 2 cut(s) 280, 934
MhlI GDGCHC 2 cut(s) 664, 991
MluCI AATT 7 cut(s) 274, 401, 411, 464, 1100, 1113, 1275
MlyI GAGTC 2 cut(s) 203, 1197
MmeI TCCRAC 2 cut(s) 685, 1139
MseI TTAA 5 cut(s) 240, 273, 383, 699, 1103
MspA1I CMGCKG 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 382
MspR9I CCNGG 1 cut(s) 1197
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 1 cut(s) 1197
MwoI GCNNNNNNNGC 8 cut(s) 11, 17, 305, 590, 808, 1037, 1267, 1288
NcoI CCATGG 1 cut(s) 65
NdeII GATC 4 cut(s) 280, 667, 934, 1244
NlaIII CATG 3 cut(s) 69, 910, 1261
NlaIV GGNNCC 2 cut(s) 926, 990
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 329, 1189
NspI RCATGY 2 cut(s) 910, 1261
NspV TTCGAA 2 cut(s) 261, 1240
PaeI GCATGC 2 cut(s) 910, 1261
PaqCI CACCTGC 1 cut(s) 638
PciSI GCTCTTC 1 cut(s) 154
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 3 cut(s) 570, 603, 1119
PflMI CCANNNNNTGG 1 cut(s) 557
PleI GAGTC 2 cut(s) 202, 1196
PpsI GAGTC 2 cut(s) 202, 1196
Ppu21I YACGTR 1 cut(s) 374
PshBI ATTAAT 1 cut(s) 699
Psp1406I AACGTT 1 cut(s) 611
Psp6I CCWGG 1 cut(s) 1195
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 1 cut(s) 1195
PspN4I GGNNCC 2 cut(s) 926, 990
PspPI GGNCC 2 cut(s) 211, 298
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 3 cut(s) 22, 599, 1288
PsuI RGATCY 2 cut(s) 280, 934
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 2 cut(s) 376, 624
RsaNI GTAC 2 cut(s) 375, 623
SapI GCTCTTC 1 cut(s) 154
SaqAI TTAA 5 cut(s) 240, 273, 383, 699, 1103
Sau3AI GATC 4 cut(s) 280, 667, 934, 1244
Sau96I GGNCC 2 cut(s) 211, 298
SchI GAGTC 2 cut(s) 203, 1197
ScrFI CCNGG 1 cut(s) 1197
SduI GDGCHC 2 cut(s) 664, 991
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 4 cut(s) 291, 337, 505, 591
SfuI TTCGAA 2 cut(s) 261, 1240
SmlI CTYRAG 2 cut(s) 382, 943
SmoI CTYRAG 2 cut(s) 382, 943
SnaBI TACGTA 1 cut(s) 374
SphI GCATGC 2 cut(s) 910, 1261
Sse9I AATT 7 cut(s) 274, 401, 411, 464, 1100, 1113, 1275
SsiI CCGC 5 cut(s) 75, 189, 850, 1035, 1038
SspMI CTAG 3 cut(s) 480, 627, 1226
StyD4I CCNGG 1 cut(s) 1195
StyI CCWWGG 2 cut(s) 65, 626
TaaI ACNGT 5 cut(s) 509, 622, 718, 859, 895
TaiI ACGT 2 cut(s) 376, 614
TaqI TCGA 5 cut(s) 261, 442, 1065, 1117, 1240
TasI AATT 7 cut(s) 274, 401, 411, 464, 1100, 1113, 1275
TauI GCSGC 2 cut(s) 1037, 1040
TfiI GAWTC 3 cut(s) 570, 603, 1119
Tru1I TTAA 5 cut(s) 240, 273, 383, 699, 1103
Tru9I TTAA 5 cut(s) 240, 273, 383, 699, 1103
TscAI CASTG 3 cut(s) 38, 625, 862
TseFI GTSAC 2 cut(s) 329, 1189
Tsp45I GTSAC 2 cut(s) 329, 1189
TspDTI ATGAA 1 cut(s) 801
TspGWI ACGGA 3 cut(s) 545, 626, 947
TspRI CASTG 3 cut(s) 38, 625, 862
Van91I CCANNNNNTGG 1 cut(s) 557
Vha464I CTTAAG 1 cut(s) 382
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 3 cut(s) 401, 1113, 1275
XceI RCATGY 2 cut(s) 910, 1261
XmaJI CCTAGG 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 370
XspI CTAG 3 cut(s) 480, 627, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.