Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011276

Physical Location & Seq

Genomic Coordinates Reverse (-)

37816137 .. 37834735

Gene Structure 18599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0236000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGATACACAAAGAGAGCCAACTTTGGAAGAGAAAGGAGAGGAACGTGCCAAAGTGGAAGCGTGGAATTATGTGCTTGGGTTTTCAAAAATTGCAGTGGTAAAATGTGCCATTGAGCTTGGAATAGCTGATGCTATTGAAAGCCATGGAAGCCCCATGACACTCTTAGAGCTATCGGCAACTCTTAAGTGCGATCCTTCTTCCCTTTACCGCATCATGAGGTTCCTAGTTCACCAGAAAATATTCAAAGAAGTCCAACCCAAAATCCCATCCGGCCCCAAAAGTTATGCACAAACACCTTTGTCCCGCTGCCTACTAAAATCCAGTCAAAATAGCATGGCTGCATTGATTTTGCTGGAGAGTAGTCCAGTAATGCTAGCACCATGGCATGGCCTTAGTGCCCGTATTCTAGGCAATGGCACCAATACTCCCGCATTTGAGGCAGTACATGGTGAGGATATATGGAGCTTTGCAGCGGCTAATCCTGGTCACAGCGAGCTTATCAATGAAGCAATGGCTTGTGATGCAAGCTTGGCACTGCCTGCACTGATTGAGAGTTCTTTAGAGGTTTTCAATGGGATTGAGACCATAGTGGATGTGGGTGGTGGTAATGGAACTACTTTAGGCTTGTTGGTTAAGGCCTGTCCTTGGATTACTCGAGGGATCAATTTTGATCTTCCTCATGTTGTATCTGTTGCTGAGGAGAGTGATCGAGTGGAGAGTGTTGGAGGAGACATGTTTGATTGTATTCCAAAGGCCGATGCTGCAATTATCAAATGGGTTCTTCATGATTGGGGAGATGAGGAGTGCATCCGTATACTGAAGAAATGTAAGGAAGCAATTCCTGAGGACAAAGGGAAGGTGATAATTCTGGAAGCTGTTATTGAAGAAGATGAGATCAAAGACGAGCTAACCGATGTGAGATTGATGCTAGACATGGTGATGATGGCCCATACTAGCACTGGCAAAGAGAGGACCTTGAAGGAATGGGGATATGTTCTTGGGGAAGCTGGCTTTAGCCGACACACGGTCACACCTATTAATGCTGTCCAATCTGTTATCCAGGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0010270 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3493 TPR_1 TPR_2

Protein Analysis

359

Amino Acids

39.22

Weight (kDa)

4.92

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	23 - 109	1.5e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 341	9.2e-48	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02910 AT1G02910
fragaria_vesca	FvH4_2g25340 FvH4_2g25340 FvH4_2g25340 FvH4_2g25340
malus_domestica	MD03G1284800.v1.1 MD11G1304300.v1.1
prunus_persica	Prupe.8G257900_v2.0.a1
pyrus_communis	pycom11g26620
rosa_chinensis	RchiOBHm_Chr6g0293521
rosa_laevigata	RLG00000011944
rosa_multiflora	Rmu_sc0006269.1_g000009
rosa_roxburghii	Rroxscaffold_7G00174120
rosa_rugosa	Rorug06G0236000 Rorug06G0236100.1
rosa_samantha	Rh6AG348800 Rh6CG362900 Rh6DG349800
rosa_wichuraiana	Rw6G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	820
AciI	CCGC	4 cut(s)	214, 310, 435, 479
AclWI	GGATC	2 cut(s)	191, 674
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	3 cut(s)	392, 651, 1030
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	6 cut(s)	90, 143, 250, 577, 890, 985
AhdI	GACNNNNNGTC	1 cut(s)	1031
AjnI	CCWGG	2 cut(s)	487, 1065
AluBI	AGCT	9 cut(s)	121, 131, 175, 471, 502, 534, 881, 913, 1013
AluI	AGCT	9 cut(s)	121, 131, 175, 471, 502, 534, 881, 913, 1013
Alw26I	GTCTC	2 cut(s)	581, 729
AlwI	GGATC	2 cut(s)	191, 674
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	5 cut(s)	277, 394, 642, 759, 951
ApeKI	GCWGC	4 cut(s)	312, 344, 476, 767
AseI	ATTAAT	1 cut(s)	1044
Asp700I	GAANNNNTTC	2 cut(s)	245, 843
AspS9I	GGNCC	3 cut(s)	278, 952, 978
AsuHPI	GGTGA	4 cut(s)	227, 467, 877, 955
AsuNHI	GCTAGC	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	660
AvaII	GGWCC	1 cut(s)	978
AxyI	CCTNAGG	1 cut(s)	849
BaeGI	GKGCMC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	4 cut(s)	299, 331, 488, 754
BccI	CCATC	2 cut(s)	280, 943
BciT130I	CCWGG	2 cut(s)	489, 1067
BcoDI	GTCTC	2 cut(s)	581, 729
BfaI	CTAG	5 cut(s)	230, 380, 413, 935, 960
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
BlsI	GCNGC	5 cut(s)	314, 346, 478, 481, 769
Bme1390I	CCNGG	2 cut(s)	489, 1067
Bme18I	GGWCC	1 cut(s)	978
BmeRI	GACNNNNNGTC	1 cut(s)	1031
BmeT110I	CYCGRG	1 cut(s)	660
BmgT120I	GGNCC	3 cut(s)	278, 952, 978
BmiI	GGNNCC	3 cut(s)	227, 280, 424
BmrFI	CCNGG	2 cut(s)	489, 1067
BmsI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 921
BmtI	GCTAGC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	148, 386, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 651, 1030
Bse1I	ACTGG	3 cut(s)	327, 371, 970
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	2 cut(s)	424, 522
BseBI	CCWGG	2 cut(s)	489, 1067
BseDI	CCNNGG	3 cut(s)	148, 386, 650
BseGI	GGATG	3 cut(s)	272, 604, 813
BseLI	CCNNNNNNNGG	3 cut(s)	392, 651, 1030
BseMI	GCAATG	2 cut(s)	424, 522
BseMII	CTCAG	2 cut(s)	693, 840
BseNI	ACTGG	3 cut(s)	327, 371, 970
BseRI	GAGGAG	3 cut(s)	719, 747, 821
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	4 cut(s)	299, 331, 488, 754
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	5 cut(s)	279, 396, 644, 761, 953
BshNI	GGYRCC	1 cut(s)	422
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	3 cut(s)	392, 651, 1030
BsmAI	GTCTC	2 cut(s)	581, 729
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	5 cut(s)	279, 396, 644, 761, 953
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	5 cut(s)	196, 666, 676, 712, 900
Bsp19I	CCATGG	2 cut(s)	148, 386
BspACI	CCGC	4 cut(s)	214, 310, 435, 479
BspANI	GGCC	5 cut(s)	279, 396, 644, 761, 953
BspCNI	CTCAG	2 cut(s)	694, 841
BspHI	TCATGA	2 cut(s)	219, 790
BspLI	GGNNCC	3 cut(s)	227, 280, 424
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	191, 674
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	424, 522
BsrI	ACTGG	3 cut(s)	327, 371, 970
BssECI	CCNNGG	3 cut(s)	148, 386, 650
BssMI	GATC	5 cut(s)	196, 666, 676, 712, 900
BssNAI	GTATAC	1 cut(s)	821
BssT1I	CCWWGG	3 cut(s)	148, 386, 650
Bst1107I	GTATAC	1 cut(s)	821
Bst2UI	CCWGG	2 cut(s)	489, 1067
Bst4CI	ACNGT	1 cut(s)	1033
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	5 cut(s)	381, 500, 532, 546, 1015
BstDEI	CTNAG	4 cut(s)	169, 398, 702, 849
BstDSI	CCRYGG	2 cut(s)	148, 386
BstF5I	GGATG	3 cut(s)	272, 604, 813
BstKTI	GATC	5 cut(s)	199, 669, 679, 715, 903
BstMAI	GTCTC	2 cut(s)	581, 729
BstMBI	GATC	5 cut(s)	196, 666, 676, 712, 900
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
BstNI	CCWGG	2 cut(s)	489, 1067
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	2 cut(s)	487, 1065
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	4 cut(s)	299, 331, 488, 754
BstZ17I	GTATAC	1 cut(s)	821
Bsu36I	CCTNAGG	1 cut(s)	849
BsuRI	GGCC	5 cut(s)	279, 396, 644, 761, 953
BtgI	CCRYGG	2 cut(s)	148, 386
BtsCI	GGATG	3 cut(s)	272, 604, 813
BtsI	GCAGTG	2 cut(s)	105, 539
BtsIMutI	CAGTG	4 cut(s)	105, 539, 548, 963
Cac8I	GCNNGC	5 cut(s)	381, 500, 532, 546, 1015
CciI	TCATGA	2 cut(s)	219, 790
Cfr13I	GGNCC	3 cut(s)	278, 952, 978
Csp6I	GTAC	1 cut(s)	449
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	4 cut(s)	169, 398, 702, 849
DpnI	GATC	5 cut(s)	198, 668, 678, 714, 902
DpnII	GATC	5 cut(s)	196, 666, 676, 712, 900
DriI	GACNNNNNGTC	1 cut(s)	1031
Eam1104I	CTCTTC	1 cut(s)	27
Eam1105I	GACNNNNNGTC	1 cut(s)	1031
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	148, 386, 650
Eco147I	AGGCCT	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	978
Eco57I	CTGAAG	1 cut(s)	845
Eco81I	CCTNAGG	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	978
EcoRII	CCWGG	2 cut(s)	487, 1065
EcoT14I	CCWWGG	3 cut(s)	148, 386, 650
ErhI	CCWWGG	3 cut(s)	148, 386, 650
FaqI	GGGAC	1 cut(s)	292
FauI	CCCGC	2 cut(s)	317, 442
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
FokI	GGATG	3 cut(s)	259, 611, 800
Fsp4HI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
FspBI	CTAG	5 cut(s)	230, 380, 413, 935, 960
GluI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	5 cut(s)	279, 396, 644, 761, 953
HapII	CCGG	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	532
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	4 cut(s)	227, 467, 877, 955
Hpy166II	GTNNAC	2 cut(s)	235, 821
Hpy188III	TCNNGA	4 cut(s)	220, 791, 848, 875
Hpy8I	GTNNAC	2 cut(s)	235, 821
HpyAV	CCTTC	3 cut(s)	210, 856, 979
HpyCH4III	ACNGT	1 cut(s)	1033
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	8 cut(s)	98, 293, 347, 476, 530, 548, 770, 813
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
HpyF3I	CTNAG	4 cut(s)	169, 398, 702, 849
HpySE526I	ACGT	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	196, 666, 676, 712, 900
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	4 cut(s)	299, 331, 488, 754
LweI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 921
MaeI	CTAG	5 cut(s)	230, 380, 413, 935, 960
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	491, 1033
MalI	GATC	5 cut(s)	198, 668, 678, 714, 902
MboI	GATC	5 cut(s)	196, 666, 676, 712, 900
MboII	GAAGA	8 cut(s)	17, 44, 195, 671, 779, 838, 902, 905
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	6 cut(s)	70, 93, 670, 771, 843, 870
MmeI	TCCRAC	2 cut(s)	283, 709
MroXI	GAANNNNTTC	2 cut(s)	245, 843
MseI	TTAA	3 cut(s)	189, 639, 1044
MslI	CAYNNNNRTG	1 cut(s)	944
MspA1I	CMGCKG	2 cut(s)	312, 479
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	489, 1067
MvaI	CCWGG	2 cut(s)	489, 1067
MwoI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
NcoI	CCATGG	2 cut(s)	148, 386
NdeII	GATC	5 cut(s)	196, 666, 676, 712, 900
NheI	GCTAGC	1 cut(s)	379
NlaIV	GGNNCC	3 cut(s)	227, 280, 424
NmuCI	GTSAC	2 cut(s)	491, 1033
NspI	RCATGY	1 cut(s)	742
PaeR7I	CTCGAG	1 cut(s)	660
PagI	TCATGA	2 cut(s)	219, 790
PceI	AGGCCT	1 cut(s)	644
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PdmI	GAANNNNTTC	2 cut(s)	245, 843
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	5 cut(s)	314, 346, 478, 481, 769
PpuMI	RGGWCCY	1 cut(s)	978
PscI	ACATGT	1 cut(s)	738
PshBI	ATTAAT	1 cut(s)	1044
Psp5II	RGGWCCY	1 cut(s)	978
Psp6I	CCWGG	2 cut(s)	487, 1065
PspGI	CCWGG	2 cut(s)	487, 1065
PspN4I	GGNNCC	3 cut(s)	227, 280, 424
PspPI	GGNCC	3 cut(s)	278, 952, 978
PspPPI	RGGWCCY	1 cut(s)	978
PspXI	VCTCGAGB	1 cut(s)	660
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	1 cut(s)	944
SaqAI	TTAA	3 cut(s)	189, 639, 1044
SatI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
Sau3AI	GATC	5 cut(s)	196, 666, 676, 712, 900
Sau96I	GGNCC	3 cut(s)	278, 952, 978
ScrFI	CCNGG	2 cut(s)	489, 1067
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 921
Sfr274I	CTCGAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	978
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	2 cut(s)	188, 660
SmoI	CTYRAG	2 cut(s)	188, 660
Sse9I	AATT	6 cut(s)	70, 93, 670, 771, 843, 870
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	4 cut(s)	214, 310, 435, 479
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	5 cut(s)	230, 380, 413, 935, 960
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	487, 1065
StyI	CCWWGG	3 cut(s)	148, 386, 650
TaaI	ACNGT	1 cut(s)	1033
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	661, 715
TasI	AATT	6 cut(s)	70, 93, 670, 771, 843, 870
TatI	WGTACW	1 cut(s)	448
TauI	GCSGC	1 cut(s)	482
Tru1I	TTAA	3 cut(s)	189, 639, 1044
Tru9I	TTAA	3 cut(s)	189, 639, 1044
TscAI	CASTG	4 cut(s)	105, 546, 555, 970
TseFI	GTSAC	2 cut(s)	491, 1033
TseI	GCWGC	4 cut(s)	312, 344, 476, 767
Tsp45I	GTSAC	2 cut(s)	491, 1033
TspDTI	ATGAA	2 cut(s)	525, 779
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	4 cut(s)	105, 546, 555, 970
Van91I	CCANNNNNTGG	1 cut(s)	392
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	978
VspI	ATTAAT	1 cut(s)	1044
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	2 cut(s)	598, 962
XhoI	CTCGAG	1 cut(s)	660
XmiI	GTMKAC	1 cut(s)	820
XmnI	GAANNNNTTC	2 cut(s)	245, 843
XspI	CTAG	5 cut(s)	230, 380, 413, 935, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.