AT1G03260

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017506
Physical Location & Seq
Reverse (-)
795449 .. 798491
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03260.1

Sequence Viewer

Length: 825 bp
ATGGCAGCCATGTCCTTTACTCCGTCCACTTTTCGAATCGCTATCTCGTTGCTCCTTCTTGTTGCTATCGTCTCCGCCGTCATTTTTCTCCCGGTCGAACAGAAATTGAAGGACTTCTTGTTATGGATTAAGGAAGATCTTGGACCTTTTGGTCCACTTGCATTGGCTTTGGCTTATATTCCTCTCACAATTGTGGCGGTTCCTGCTTCTGTACTCACGCTAGGTGGTGGTTACCTTTTTGGCCTGCCAGTAGGATTTGTAGCCGACTCTCTTGGAGCTACATTAGGTGCAACAGCGGCATTTCTGCTTGGTAGAACGATTGGTAAATCTTATGTCACTTCAAAAATAAAGCATTACCCAAAGTTTCAAGCTGTTTCCGTTGCAATTCAAAAATCTGGCTTCAAGATAGTCTTGCTGCTACGCGTTGTCCCCATACTGCCCTTCAATATGTTGAATTACCTCCTATCTGTAACTCCTGTTCGCTTAGGGGAATACATGCTGGCCACTTGGTTGGGAATGATGCCCATTACATTTGCGCTAGTATATGTTGGAACTACTCTGAAAGATCTTTCTGATATTACACATGGATGGCATGAGGTGTCAGTATTTCGTTGGGTAATTATGATGGTTGGCGTAGCTCTAGCTGTAATTCTGATAATATGCATAACAAGAGTGGCGAAATCATCCTTGGACAAAGCATTGGCTGAGAATGGTACTGAATTAGATGGGAAGAAGAATGACGACGCTTCCGTACTCCCGATCGCAGAGCCACCACCGGATCTACAAGAGCCTCTCGTTATCAGAATCGACCCATCCAATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

274

Amino Acids

29.55

Weight (kDa)

8.57

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 67 - 185 4.3e-26 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03260
fragaria_vesca FvH4_2g23830
malus_domestica MD03G1267800.v1.1
rosa_chinensis RchiOBHm_Chr6g0291411
rosa_laevigata RLG00000012116
rosa_multiflora Rmu_sc0003735.1_g000021
rosa_roxburghii Rroxscaffold_7G00176070
rosa_rugosa Rorug06G0219100
rosa_samantha Rh6AG331400 Rh6BG338300 Rh6CG344600
rosa_wichuraiana Rw6G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 150
AccII CGCG 1 cut(s) 423
AciI CCGC 3 cut(s) 75, 197, 296
AclWI GGATC 1 cut(s) 786
AcoI YGGCCR 1 cut(s) 501
AfaI GTAC 3 cut(s) 213, 715, 753
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 7 cut(s) 109, 342, 368, 389, 403, 445, 454
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 4 cut(s) 278, 371, 638, 644
AluI AGCT 4 cut(s) 278, 371, 638, 644
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 786
AoxI GGCC 2 cut(s) 241, 501
ApeKI GCWGC 2 cut(s) 5, 415
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 2 cut(s) 143, 152
AsuC2I CCSGG 1 cut(s) 92
AsuII TTCGAA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 143, 152
BalI TGGCCA 1 cut(s) 503
BbvI GCAGC 2 cut(s) 17, 402
BccI CCATC 4 cut(s) 582, 619, 719, 820
BceAI ACGGC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 3 cut(s) 221, 539, 641
BglII AGATCT 2 cut(s) 136, 565
BisI GCNGC 3 cut(s) 6, 297, 416
BlsI GCNGC 3 cut(s) 7, 298, 417
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 2 cut(s) 143, 152
BmgT120I GGNCC 2 cut(s) 143, 152
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 484
Bpu14I TTCGAA 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 687
BsaWI WCCGGW 1 cut(s) 775
Bse1I ACTGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 687
BseGI GGATG 3 cut(s) 593, 683, 812
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 17, 402
Bsh1236I CGCG 1 cut(s) 423
Bsh1285I CGRYCG 2 cut(s) 96, 762
BshFI GGCC 2 cut(s) 243, 503
BsiEI CGRYCG 2 cut(s) 96, 762
BsiSI CCGG 2 cut(s) 92, 776
BslFI GGGAC 1 cut(s) 413
BsmAI GTCTC 1 cut(s) 76
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 2 cut(s) 243, 503
Bsp119I TTCGAA 1 cut(s) 34
Bsp143I GATC 4 cut(s) 136, 565, 759, 778
BspACI CCGC 3 cut(s) 75, 197, 296
BspANI GGCC 2 cut(s) 243, 503
BspCNI CTCAG 1 cut(s) 697
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 1 cut(s) 786
BspT104I TTCGAA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 687
BssMI GATC 4 cut(s) 136, 565, 759, 778
BssT1I CCWWGG 1 cut(s) 687
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 245, 501
BstDEI CTNAG 2 cut(s) 484, 705
BstEII GGTNACC 1 cut(s) 230
BstF5I GGATG 3 cut(s) 593, 683, 812
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 4 cut(s) 139, 568, 762, 781
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 4 cut(s) 136, 565, 759, 778
BstMCI CGRYCG 2 cut(s) 96, 762
BstMWI GCNNNNNNNGC 2 cut(s) 203, 296
BstNSI RCATGY 1 cut(s) 499
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 17, 402
BstX2I RGATCY 3 cut(s) 136, 565, 778
BstXI CCANNNNNNTGG 1 cut(s) 511
BstYI RGATCY 3 cut(s) 136, 565, 778
BsuRI GGCC 2 cut(s) 243, 503
BtsCI GGATG 3 cut(s) 593, 683, 812
Cac8I GCNNGC 2 cut(s) 245, 501
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 2 cut(s) 143, 152
CseI GACGC 1 cut(s) 752
Csp6I GTAC 3 cut(s) 212, 714, 752
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 4 cut(s) 10, 496, 584, 593
CviQI GTAC 3 cut(s) 212, 714, 752
DdeI CTNAG 2 cut(s) 484, 705
DpnI GATC 4 cut(s) 138, 567, 761, 780
DpnII GATC 4 cut(s) 136, 565, 759, 778
DrdI GACNNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 501
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 687
Eco47I GGWCC 2 cut(s) 143, 152
Eco91I GGTNACC 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 687
EcoT22I ATGCAT 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 687
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 4 cut(s) 13, 499, 587, 596
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 395, 427
FaqI GGGAC 1 cut(s) 413
FatI CATG 4 cut(s) 9, 495, 583, 592
Fnu4HI GCNGC 3 cut(s) 6, 297, 416
FokI GGATG 3 cut(s) 600, 670, 799
Fsp4HI GCNGC 3 cut(s) 6, 297, 416
FspBI CTAG 3 cut(s) 221, 539, 641
GlaI GCGC 1 cut(s) 537
GluI GCNGC 3 cut(s) 6, 297, 416
HaeIII GGCC 2 cut(s) 243, 503
HapII CCGG 2 cut(s) 92, 776
HgaI GACGC 1 cut(s) 752
HhaI GCGC 1 cut(s) 538
Hin1II CATG 4 cut(s) 13, 499, 587, 596
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HinfI GANTC 3 cut(s) 36, 266, 804
HpaII CCGG 2 cut(s) 92, 776
Hpy166II GTNNAC 2 cut(s) 27, 155
Hpy188I TCNGA 4 cut(s) 561, 574, 654, 803
Hpy188III TCNNGA 2 cut(s) 403, 757
Hpy8I GTNNAC 2 cut(s) 27, 155
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 3 cut(s) 65, 103, 451
HpyCH4V TGCA 4 cut(s) 161, 290, 383, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 296
HpyF3I CTNAG 2 cut(s) 484, 705
Hsp92II CATG 4 cut(s) 13, 499, 587, 596
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 4 cut(s) 136, 565, 759, 778
LmnI GCTCC 2 cut(s) 57, 275
LpnPI CCDG 8 cut(s) 105, 216, 257, 261, 381, 485, 489, 789
Lsp1109I GCAGC 2 cut(s) 17, 402
LweI GCATC 1 cut(s) 510
MaeI CTAG 3 cut(s) 221, 539, 641
MaeIII GTNAC 3 cut(s) 230, 334, 469
MalI GATC 4 cut(s) 138, 567, 761, 780
MboI GATC 4 cut(s) 136, 565, 759, 778
MboII GAAGA 3 cut(s) 146, 742, 745
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 3 cut(s) 136, 565, 778
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 7 cut(s) 104, 189, 384, 454, 618, 648, 719
MluI ACGCGT 1 cut(s) 421
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 4 cut(s) 192, 470, 589, 801
Mox20I TGGCCA 1 cut(s) 503
Mph1103I ATGCAT 1 cut(s) 665
MroXI GAANNNNTTC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 503
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 2 cut(s) 191, 586
Msp20I TGGCCA 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 2 cut(s) 92, 776
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 189
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 203, 296
NciI CCSGG 1 cut(s) 92
NdeII GATC 4 cut(s) 136, 565, 759, 778
NlaIII CATG 4 cut(s) 13, 499, 587, 596
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 665
NspI RCATGY 1 cut(s) 499
NspV TTCGAA 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 747
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 2 cut(s) 36, 804
PkrI GCNGC 3 cut(s) 7, 298, 417
Ple19I CGATCG 1 cut(s) 762
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PspEI GGTNACC 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 2 cut(s) 143, 152
PsrI GAACNNNNNNTAC 2 cut(s) 462, 494
PsuI RGATCY 3 cut(s) 136, 565, 778
PvuI CGATCG 1 cut(s) 762
RsaI GTAC 3 cut(s) 213, 715, 753
RsaNI GTAC 3 cut(s) 212, 714, 752
RseI CAYNNNNRTG 2 cut(s) 191, 586
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 6, 297, 416
Sau3AI GATC 4 cut(s) 136, 565, 759, 778
Sau96I GGNCC 2 cut(s) 143, 152
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 92
SfaNI GCATC 1 cut(s) 510
SfuI TTCGAA 1 cut(s) 34
SinI GGWCC 2 cut(s) 143, 152
SmiMI CAYNNNNRTG 2 cut(s) 191, 586
Sse9I AATT 7 cut(s) 104, 189, 384, 454, 618, 648, 719
SsiI CCGC 3 cut(s) 75, 197, 296
SspMI CTAG 3 cut(s) 221, 539, 641
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 687
TaqI TCGA 3 cut(s) 34, 96, 807
TasI AATT 7 cut(s) 104, 189, 384, 454, 618, 648, 719
TatI WGTACW 1 cut(s) 211
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 2 cut(s) 36, 804
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 2 cut(s) 5, 415
Tsp45I GTSAC 1 cut(s) 334
TspGWI ACGGA 3 cut(s) 12, 367, 739
VpaK11BI GGWCC 2 cut(s) 143, 152
XceI RCATGY 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 3 cut(s) 221, 539, 641
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.